ID AF480940; SV 1; linear; genomic DNA; STD; VRL; 2630 BP. XX AC AF480940; XX DT 03-MAR-2003 (Rel. 75, Created) DT 31-AUG-2025 (Rel. 144, Last updated, Version 11) XX DE Cotton leaf crumple virus - [Mexico : Sonora] segment A, complete sequence. XX KW . XX OS Cotton leaf crumple virus OC Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; OC Geplafuvirales; Geminiviridae; Begomovirus; Begomovirus gossypii. XX RN [1] RP 1-2630 RX PUBMED; 18943795. RA Idris A.M., Brown J.K.; RT "Cotton leaf crumple virus Is a Distinct Western Hemisphere Begomovirus RT Species with Complex Evolutionary Relationships Indicative of Recombination RT and Reassortment"; RL Phytopathology 94(10):1068-1074(2004). XX RN [2] RP 1-2630 RA Brown J.K., Idris A.M.; RT "Genetic Differentiation of Whitefly Bemisia tabaci Mitochondrial RT Cytochrome Oxidase I, and Phylogeographic Concordance with the Coat Protein RT of the Plant Virus Genus Begomovirus"; RL Ann. Entomol. Soc. Am. 98(6):827-837(2005). XX RN [3] RP 1-2630 RA Idris A.M., Brown J.K.; RT "Molecular characterization of cotton leaf crumple geminivirus"; RL Unpublished. XX RN [4] RP 1-2630 RA Idris A.M., Brown J.K.; RT ; RL Submitted (05-FEB-2002) to the INSDC. RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA XX DR MD5; b9a115d4b6cbf615037e783b200bee24. XX FH Key Location/Qualifiers FH FT source 1..2630 FT /organism="Cotton leaf crumple virus" FT /segment="A" FT /host="cotton" FT /mol_type="genomic DNA" FT /geo_loc_name="Mexico: Sonora" FT /db_xref="taxon:77647" FT CDS 195..950 FT /codon_start=1 FT /product="coat protein AV1" FT /protein_id="AAO49268.1" FT /translation="MPKRDAPWRLLAGTSKVSRNANYSPLRVLGPKVNKASEWVYRPMY FT RKPRIYRTLRTPDIPRGCEGPCKVQSYEQRHDVSHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRLQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSIMN" FT CDS complement(947..1345) FT /codon_start=1 FT /product="AC3" FT /protein_id="AAO49271.1" FT /translation="MDSRTGEIITARQAENGVYIWEIINPLYFKIYGVEDLLYTRTRIY FT HVQIRFNHNLRRALHLHKAYLNFQVWTTSLTASGSTYLIRFKQLVMLYLDELGVISLNN FT VIRAVRFATDKSYVSYVLENHSIKFKFY" FT CDS complement(1092..1481) FT /codon_start=1 FT /product="AC2" FT /protein_id="AAO49270.1" FT /translation="MLSSSLSTPPSIKKAHRQAKRRAIRRRRIDLNCGCTIYFHIGCTG FT HGFTHRGNHHCTSGREWRVYLGDNKSPIFQDIRSRGSAIHQDAYIPRPDPIQPQLTESV FT ASPQSLPELPSLDDISDSFWVDLFN" FT CDS complement(1408..2472) FT /codon_start=1 FT /product="replication associated protein AC1" FT /protein_id="AAO49269.1" FT /translation="MPRNPDSFRLQARHIFLTYPKCDIPKNEALQMLQTLSWSVVKPTY FT IRVAREEHSDGFPHLHCLIQLSGKSNIKNKRFFDLTHPRRSTNFHPNIQAAKDANAVKN FT YITKDGDCCESGQFKVPGGTKKNKDDVYYNAINAPSLAEALAIIRAGDPRAFIVSYHNI FT TANLERLFKKAPEQWVPPFPLSSFTNVPEQMQEWADDYFGMGPAARPVRPVSLIVEGDS FT RTGKTMWARALGPHNYLSGHLDFNNRVYSNNVAYNVIDDVAPQYLKLKHWKELLGAQKD FT WQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLDKAENASLKHWTLKNVIFITLDAP FT LYQEGTQASQEEGD" XX SQ Sequence 2630 BP; 689 A; 550 C; 622 G; 769 T; 0 other; actgatggcc gcgcggattt tggagccccc ttttgtcgtt agcgcgacct ttaattcaaa 60 ttaaaggttg cttttttcta tcgtccaatc attttgcgcc tgactagcct agatattagc 120 aacaacttcg cgactaagtt gttgaccgtc aagtataaat taatgggctt atggcccaat 180 gggtatagag caaaatgccc aagcgtgatg ccccgtggcg cttattagcg ggtacgtcta 240 aggtaagtcg aaatgccaac tactctccct tgagagtatt gggccctaaa gttaataagg 300 cctctgaatg ggtttacagg cctatgtaca ggaagcccag aatctatcgc acgttaagga 360 cgcctgacat tccgagaggc tgtgaagggc catgtaaagt ccagtcatat gaacagcgcc 420 acgatgtctc acacgtgggt aaggtaatgt gtatatctga tgtcacacgt ggtaatggta 480 tcacccaccg tgttggtaag cgtttctgtg ttaagtctgt atatatttta gggaaaatat 540 ggatggatga gaatattaag ctgaagaacc acacgaacag cgtcattttt tggctggtta 600 gagatcgtag accatatggc acgcctatgg actttggtca agtgtttaat atgtttgaca 660 acgagccaag tactgccact gtcaagaacg atctcagaga taggttgcag gtcatgcaca 720 agttttatgc taaggtaact ggaggacaat acgcgagcaa cgagcaagcc ttggtcaaga 780 gattctggaa ggtcaacaat catgtggtgt acaaccacca agaagcaggg aaatatgaga 840 atcacacgga gaatgcgtta ttattgtaca tggcatgtac tcatgcctct aatcctgtgt 900 atgcaacgtt gaaaattcgg atctattttt acgattcgat catgaattaa taaaatttaa 960 attttattga atgattttct agtacataac tgacatacga cttatcagtt gcgaaacgaa 1020 cagctctaat tacattgtta agtgaaatta cgcctaattc gtctaagtac aacataacca 1080 actgtttaaa cctaattaaa taagtcgacc cagaagctgt cagagatgtc gtccagactt 1140 ggaagttcag gtaagctttg tggagatgca acgctctccg taagttgtgg ttgaatcgga 1200 tctggacgtg gtatatacgc gtcctggtgt atagcagatc ctctactccg tatatcttga 1260 aatatagggg atttattatc tcccagatat acacgccatt ctctgcctga cgtgcagtga 1320 tgatttcccc tgtgcgtgaa tccatgaccg gtgcagccta tgtggaagta tatggtgcac 1380 ccacagttta gatcaatgcg tcgtcgtcta atcgccctcc tcttggcttg cctgtgtgcc 1440 ttcttgatag aggggggcgt cgagagtgat gaagataaca ttcttgagag tccaatgttt 1500 gagcgacgca ttttccgctt tatccaggaa atctttatag ctggatccct cgcctggatt 1560 gcaaagcacg attgaaggga tccctccttt aatttgaact ggtttcccgt acttgcaatt 1620 tgactgccag tctttttggg ccccaagaag ctctttccaa tgctttagct ttaggtattg 1680 cggtgctacg tcatcaatga cgttataggc aacattattc gagtacactc gattattgaa 1740 gtccaggtgt ccactgaggt aattatgtgg gcctaaagca cgagcccaca tcgtcttgcc 1800 cgttctagaa tcaccttcca ctatgagact aactggtctt acaggccgcg cagcgggacc 1860 cattccaaaa taatcatccg cccattcttg catctgttca ggaacgttag tgaaagagga 1920 aagtggaaat ggagggaccc attgttcagg cgcctttttg aaaaggcgtt ccaagttcgc 1980 tgtaatgtta tggtaactca cgatgaacgc ccttggatct ccggcccgga taattgcaag 2040 agcttccgcc aaactaggtg cattgatggc gttataatag acgtcgtctt tattcttctt 2100 tgtaccccca ggcactttga actgtccgga ttcacaacaa tcgccgtctt tggtgatgta 2160 attcttgacg gcgttggcgt ctttggctgc ttgtatgttt gggtgaaaat tggtcgacct 2220 tctggggtga gtaaggtcga aaaatctctt attcttgatg ttggactttc cagagagttg 2280 gatgagacag tgaaggtgtg ggaatccgtc cgagtgctcc tctctggcaa ctcgaatata 2340 tgttggtttg acgactgacc atgataaggt ttgaagcatt tgaagagctt cattttttgg 2400 gatatcgcac ttgggatagg ttaagaaaat atgtctggct tgtaaacgaa aagaatcggg 2460 gtttctaggc attttttaaa tagtgaccca ggactcaaaa actagctctc aacttctctc 2520 atatgttgtg gagtctggag tcctttatat atgtttacgc tatagaaggc atttggggac 2580 tctcccgggc ccaccatagg actccatacc gcggccatct atataatatt 2630 //