ID AF467768; SV 2; linear; genomic RNA; STD; VRL; 5366 BP. XX AC AF467768; XX DT 06-JUN-2002 (Rel. 72, Created) DT 26-SEP-2005 (Rel. 85, Last updated, Version 5) XX DE Crimean-Congo hemorrhagic fever virus strain IbAr10200 glycoprotein DE precursor, gene, complete cds. XX KW . XX OS Orthonairovirus haemorrhagiae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Nairoviridae; Orthonairovirus. XX RN [1] RP 1-5366 RX DOI; 10.1128/JVI.76.14.7263-7275.2002. RX PUBMED; 12072526. RA Sanchez A.J., Vincent M.J., Nichol S.T.; RT "Characterization of the glycoproteins of Crimean-Congo hemorrhagic fever RT virus"; RL J. Virol. 76(14):7263-7275(2002). XX RN [2] RP 1-5366 RA Sanchez A.J., Vincent M.J., Nichol S.T.; RT ; RL Submitted (11-JAN-2002) to the INSDC. RL Special Pathogens Branch, DVRD, NCID, Centers for Disease Control and RL Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA XX RN [3] RC Sequence update by submitter RP 1-5366 RA Sanchez A.J., Vincent M.J., Deyde V.M., Khristova M.L., Nichol S.T.; RT ; RL Submitted (19-SEP-2005) to the INSDC. RL Special Pathogens Branch, DVRD, NCID, Centers for Disease Control and RL Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA XX DR MD5; ba0e7ba165cafa6110757abd0dc3fb6a. DR EuropePMC; PMC136317; 12072526. DR EuropePMC; PMC2266736; 18197964. DR EuropePMC; PMC2668480; 19224988. DR EuropePMC; PMC2953203; 20739514. DR EuropePMC; PMC3056813; 21349180. DR EuropePMC; PMC4178757; 25100845. XX CC On Sep 19, 2005 this sequence version replaced gi:21326944. XX FH Key Location/Qualifiers FH FT source 1..5366 FT /organism="Orthonairovirus haemorrhagiae" FT /segment="M" FT /host="Hyalomma excavatum" FT /strain="IbAr10200" FT /mol_type="genomic RNA" FT /country="Nigeria:Sokoto" FT /note="from YARU, New Haven, Conn. SMB passed 13 time in FT suckling mouse brain followed by 2 passes in CDC Vero E6 FT cells" FT /db_xref="taxon:3052518" FT primer_bind 1..18 FT CDS 93..5147 FT /codon_start=1 FT /product="glycoprotein precursor" FT /db_xref="GOA:Q8JSZ3" FT /db_xref="InterPro:IPR012487" FT /db_xref="UniProtKB/Swiss-Prot:Q8JSZ3" FT /func_characterised="identical sequence" FT /protein_id="AAM48106.1" FT /translation="MHISLMYAILCLQLCGLGETHGSHNETRHNKTDTMTTPGDNPSSE FT PPVSTALSITLDPSTVTPTTPASGLEGSGEVYTSPPITTGSLPLSETTPELPVTTGTDT FT LSAGDVDPSTQTAGGTSAPTVRTSLPNSPSTPSTPQDTHHPVRNLLSVTSPGPDETSTP FT SGTGKESSATSSPHPVSNRPPTPPATAQGPTENDSHNATEHPESLTQSATPGLMTSPTQ FT IVHPQSATPITVQDTHPSPTNRSKRNLKMEIILTLSQGLKKYYGKILRLLQLTLEEDTE FT GLLEWCKRNLGLDCDDTFFQKRIEEFFITGEGHFNEVLQFRTPGTLSTTESTPAGLPTA FT EPFKSYFAKGFLSIDSGYYSAKCYSGTSNSGLQLINITRHSTRIVDTPGPKITNLKTIN FT CINLKASIFKEHREVEINVLLPQVAVNLSNCHVVIKSHVCDYSLDIDGAVRLPHIYHEG FT VFIPGTYKIVIDKKNKLNDRCTLFTDCVIKGREVRKGQSVLRQYKTEIRIGKASTGSRR FT LLSEEPSDDCISRTQLLRTETAEIHGDNYGGPGDKITICNGSTIVDQRLGSELGCYTIN FT RVRSFKLCENSATGKNCEIDSVPVKCRQGYCLRITQEGRGHVKLSRGSEVVLDACDTSC FT EIMIPKGTGDILVDCSGGQQHFLKDNLIDLGCPKIPLLGKMAIYICRMSNHPKTTMAFL FT FWFSFGYVITCILCKAIFYLLIIVGTLGKRLKQYRELKPQTCTICETTPVNAIDAEMHD FT LNCSYNICPYCASRLTSDGLARHVIQCPKRKEKVEETELYLNLERIPWVVRKLLQVSES FT TGVALKRSSWLIVLLVLFTVSLSPVQSAPIGQGKTIEAYRAREGYTSICLFVLGSILFI FT VSCLMKGLVDSVGNSFFPGLSICKTCSISSINGFEIESHKCYCSLFCCPYCRHCSTDKE FT IHKLHLSICKKRKKGSNVMLAVCKLMCFRATMEVSNRALFIRSIINTTFVLCILILAVC FT VVSTSAVEMENLPAGTWEREEDLTNFCHQECQVTETECLCPYEALVLRKPLFLDSTAKG FT MKNLLNSTSLETSLSIEAPWGAINVQSTYKPTVSTANIALSWSSVEHRGNKILVSGRSE FT SIMKLEERTGISWDLGVEDASESKLLTVSVMDLSQMYSPVFEYLSGDRQVGEWPKATCT FT GDCPERCGCTSSTCLHKEWPHSRNWRCNPTWCWGVGTGCTCCGLDVKDLFTDYMFVKWK FT VEYIKTEAIVCVELTSQERQCSLIEAGTRFNLGPVTITLSEPRNIQQKLPPEIITLHPR FT IEEGFFDLMHVQKVLSASTVCKLQSCTHGVPGDLQVYHIGNLLKGDKVNGHLIHKIEPH FT FNTSWMSWDGCDLDYYCNMGDWPSCTYTGVTQHNHASFVNLLNIETDYTKNFHFHSKRV FT TAHGDTPQLDLKARPTYGAGEITVLVEVADMELHTKKIEISGLKFASLACTGCYACSSG FT ISCKVRIHVDEPDELTVHVKSDDPDVVAASSSLMARKLEFGTDSTFKAFSAMPKTSLCF FT YIVEREHCKSCSEEDTKKCVNTKLEQPQSILIEHKGTIIGKQNSTCTAKASCWLESVKS FT FFYGLKNMLSGIFGNVFMGIFLFLAPFILLILFFMFGWRILFCFKCCRRTRGLFKYRHL FT KDDEETGYRRIIEKLNNKKGKNKLLDGERLADRRIAELFSTKTHIG" FT primer_bind complement(5349..5366) XX SQ Sequence 5366 BP; 1687 A; 1185 C; 1151 G; 1343 T; 0 other; tctcaaagaa atacttgcgg cacgtcagta cgtaagtgtt aactttgagg aagtggattg 60 agcatcttaa ttgcagcata cctgctaaca tcatgcatat atcattaatg tatgcaatcc 120 tttgcctaca gctgtgtggt ctgggagaga ctcatggatc acacaatgaa actagacaca 180 ataaaacaga caccatgaca acacccggtg ataacccgag ctctgaaccg ccagtgagca 240 cggccttgtc tattacactt gacccctcca ctgtcacacc cacaacacca gccagtggat 300 tagaaggctc aggggaagtc tacacatccc ctccgatcac caccgggagc ttgcccctgt 360 cggagacaac accagaactc cctgttacaa ccggcacaga caccttaagc gcaggtgatg 420 tcgatcccag cacgcagaca gccggaggca cctccgcacc aacagtccgc acaagtctac 480 ccaacagccc tagcacacca tctacaccac aagacacaca ccatcctgtg agaaatctac 540 tttcagtcac gagtcctggg ccagatgaaa catcaacacc ctcgggaaca ggcaaagaga 600 gctcagcaac cagtagccct catccagtct ccaacagacc accaacccct cctgcaacag 660 cccagggacc cactgaaaat gacagtcaca acgccactga acaccctgag tccctgacac 720 agtcagcaac cccaggccta atgacctctc caacacagat agtccaccca caaagtgcca 780 cccccataac cgttcaagac acacatccca gtccaacgaa caggtctaaa agaaacctta 840 agatggaaat aatcttgact ttatctcagg gtttaaaaaa gtactatggg aaaatattaa 900 ggcttctgca actcacctta gaggaggaca ctgaaggtct actggaatgg tgtaagagaa 960 atcttggtct tgattgtgat gacactttct ttcaaaagag aattgaagaa ttctttataa 1020 ctggtgaggg ccattttaat gaagttttac aatttagaac gccaggcacg ttgagcacca 1080 cagagtcaac acctgctggg ctgccaacag ctgaaccttt taagtcctac ttcgccaaag 1140 gattcctctc gatagattca ggttactact cagccaaatg ttactcagga acatccaatt 1200 cagggcttca attgattaac attacccgac attcaactag aatagttgac acacctgggc 1260 ctaagatcac taacctaaag accatcaact gcataaactt gaaggcatcg atcttcaaag 1320 aacatagaga ggttgaaatc aatgtgcttc tcccccaagt tgcagttaat ctctcaaact 1380 gtcacgttgt aatcaaatca catgtctgtg actactcttt agacattgac ggtgcggtga 1440 ggcttcctca catttaccat gaaggagttt tcatcccagg aacttacaaa atagtgatag 1500 ataaaaaaaa taagttgaat gacagatgca ccttatttac cgactgtgtg ataaaaggaa 1560 gggaggttcg taaaggacag tcagttttga ggcagtacaa gacggaaatc aggattggca 1620 aggcatcaac cggctctaga agattgcttt cagaagaacc cagtgatgac tgtatatcaa 1680 gaactcaact attaaggaca gagactgcag agatccacgg cgacaactat ggtggcccgg 1740 gtgacaaaat aaccatctgc aatggctcaa ctattgtaga ccaaagactg ggcagtgaac 1800 taggatgcta caccatcaat agagtgaggt cattcaagct atgcgaaaac agtgccacag 1860 ggaagaattg tgaaatagac agtgtcccag ttaaatgcag gcagggttat tgcctaagaa 1920 tcactcagga agggaggggc cacgtaaaat tatctagggg ctcagaggtt gtcttagatg 1980 catgcgatac aagctgtgaa ataatgatac ctaagggcac tggtgacatc ctagttgact 2040 gttcaggtgg gcagcaacat tttctaaagg acaatttgat agatctagga tgccccaaaa 2100 ttccattatt gggcaaaatg gctatttaca tttgcagaat gtcaaaccac cccaaaacaa 2160 ccatggcttt cctcttctgg ttcagctttg gctatgtaat aacctgcata ctttgcaagg 2220 ccatttttta cttgttaata attgttggaa cactagggaa aaggctcaag cagtatagag 2280 agttgaaacc tcagacttgc accatatgtg agacaactcc tgtaaatgca atagatgctg 2340 agatgcatga cctcaattgc agttacaaca tttgtcccta ctgtgcatct agactaacct 2400 cagatgggct tgctaggcat gtgatacaat gccctaagcg gaaggagaaa gtggaagaaa 2460 ctgaactgta cttgaactta gaaagaattc cttgggttgt aagaaagctg ttgcaggtgt 2520 cagagtcaac tggtgtggca ttgaaaagaa gcagttggct gattgtgctg cttgtgctat 2580 tcactgtttc attatcacca gttcaatcag cacccattgg tcaagggaag acaattgagg 2640 cataccgggc cagggaaggg tacacaagta tatgcctctt tgtactagga agtatcctat 2700 ttatagtttc ttgcctaatg aaagggctgg ttgacagtgt tggcaactcc ttcttccctg 2760 gactgtccat ttgcaaaacg tgctccataa gcagcattaa tggctttgaa attgagtccc 2820 ataagtgcta ttgcagctta ttctgttgcc cctattgtag gcactgctct accgataaag 2880 aaattcataa gctgcacttg agcatctgca aaaaaaggaa aaaaggaagt aatgtcatgt 2940 tggctgtctg caagctcatg tgtttcaggg ccaccatgga agtaagtaac agagccctgt 3000 ttatccgtag catcatcaac accacttttg ttttgtgcat actgatacta gcagtttgtg 3060 ttgttagcac ctcagcagtg gagatggaaa acctaccagc agggacctgg gaaagagaag 3120 aagacctaac aaatttctgt catcaggaat gccaggttac agagactgaa tgcctctgcc 3180 cttatgaagc tctagtactc agaaagcctt tattcctaga tagtacagct aaaggcatga 3240 aaaatctgct aaattcaaca agtttagaaa cgagtttatc aattgaggca ccatggggag 3300 caataaatgt tcagtcaacc tacaaaccaa ctgtgtcaac tgcaaacata gcactcagtt 3360 ggagctcagt ggaacacaga ggcaataaga tcttggtttc aggcagatca gaatcaatta 3420 tgaagctgga agaaaggaca ggaatcagct gggatctcgg tgtagaagat gcctctgaat 3480 ctaaactgct tacagtatct gtcatggact tgtctcagat gtactctcct gtcttcgagt 3540 acttatcagg ggacagacag gtgggagagt ggcccaaagc aacttgcaca ggtgactgcc 3600 cagaaagatg tggctgcaca tcatcaacct gtttgcacaa agaatggcct cactcaagaa 3660 attggagatg caatcccact tggtgctggg gtgtagggac tggctgcacc tgttgtggat 3720 tagatgtgaa agaccttttt acagattata tgtttgtcaa gtggaaagtt gaatacatca 3780 agacagaggc catagtgtgt gtagaactta ctagtcagga aaggcagtgt agcttgattg 3840 aagcgggcac aaggttcaat ttaggtcctg tgaccatcac actgtcagaa ccaagaaaca 3900 tccaacaaaa actccctcct gaaataatca cactgcatcc taggatcgaa gaaggttttt 3960 ttgacctgat gcatgtgcaa aaggtgttat cggcaagcac agtgtgtaag ttgcagagtt 4020 gcacacatgg tgtgccagga gacctacagg tctaccacat cggaaattta ttaaaagggg 4080 ataaggtaaa tggacatcta attcataaaa ttgagccaca cttcaacacc tcctggatgt 4140 cctgggatgg ttgtgaccta gactactact gcaacatggg agattggcct tcttgcacat 4200 acacaggggt cacccaacac aatcatgctt catttgtaaa cttactcaac attgaaactg 4260 attacacaaa gaacttccac tttcactcta aaagggtcac tgcacacgga gatacaccac 4320 aactagatct taaggcaaga ccaacctatg gtgcaggcga gatcactgtt ctggtagaag 4380 ttgctgacat ggagttacat acaaagaaga ttgaaatatc aggcttaaaa tttgcaagct 4440 tagcttgcac aggttgttat gcttgtagct ctggcatctc atgcaaagtt agaattcatg 4500 tggatgaacc agatgaactt acagtacatg ttaaaagtga tgatccagat gtggttgcag 4560 ctagctcaag tctcatggca aggaagcttg aatttggaac agacagtaca tttaaagctt 4620 tctcggccat gcctaaaact tctctatgtt tctacattgt tgaaagagaa cactgtaaga 4680 gctgcagtga agaagacaca aaaaaatgtg ttaacacaaa acttgagcaa ccacaaagca 4740 ttttgatcga acacaaggga actataatcg gaaagcaaaa cagcacttgc acggctaagg 4800 caagttgctg gttagagtca gtcaagagtt ttttttatgg cctaaagaac atgcttagtg 4860 gcatttttgg caatgtcttt atgggcattt tcttgttcct tgcccccttc atcctgttaa 4920 tactattctt tatgtttggg tggaggatcc tattctgctt taaatgttgt agaagaacca 4980 gaggcctgtt caagtataga cacctcaaag acgatgaaga aactggttat agaaggatta 5040 ttgaaaaact aaacaataaa aaaggaaaaa acaaactgct tgatggtgaa agacttgctg 5100 atagaagaat tgccgaactg ttctctacaa aaacacacat tggctagacc aactgaatgg 5160 gccttaaaaa tgatggcatt acactgaaca atgctgtcat tcatgctgac atctttagtt 5220 gcaaccctac tacattatca tcacaatata ctacatctaa tctgctacat tgtatccatg 5280 tacagactct ataatgcttg aaactgcctt tgctctattt actctgacct aaatcttgac 5340 tgcgtgccgc cactatatct ttgaga 5366 //