Dbfetch
ID AF453500; SV 3; circular; genomic DNA; STD; PHG; 6882 BP. XX AC AF453500; XX DT 20-DEC-2001 (Rel. 70, Created) DT 12-FEB-2002 (Rel. 70, Last updated, Version 3) XX DE Vibrio phage VSK, complete genome. XX KW . XX OS Vibrio phage VSK OC Viruses; Inoviridae; Fibrovirus. XX RN [1] RP 1-6882 RA Basu N., Kar S., Ghosh R.K.; RT "Molecular analysis of filamentous phage VSK of Vibrio cholerae 0139: A RT possible clue to genetic transmission"; RL Unpublished. XX RN [2] RP 1-6882 RA Basu N., Kar S., Ghosh R.K.; RT ; RL Submitted (27-NOV-2001) to the INSDC. RL Molecular Biology, Indian Institute of Chemical Biology, 4, Raja S.C. RL Mullick Road, Calcutta, West Bengal 700032, India XX RN [3] RC Sequence update by submitter RP 1-6882 RA Basu N., Kar S., Ghosh R.K.; RT ; RL Submitted (11-FEB-2002) to the INSDC. RL Molecular Biology, Indian Institute of Chemical Biology, 4, Raja S.C. RL Mullick Road, Calcutta, West Bengal 700032, India XX DR MD5; dd61d4be11fa077c81fb5f974e08cf4d. XX CC On Feb 11, 2002 this sequence version replaced gi:18601558. XX FH Key Location/Qualifiers FH FT source 1..6882 FT /organism="Vibrio phage VSK" FT /host="Vibrio cholerae O139" FT /mol_type="genomic DNA" FT /db_xref="taxon:181604" FT CDS complement(join(6872..6882,1..226)) FT /codon_start=1 FT /transl_table=11 FT /gene="orf78" FT /product="repressor 1" FT /note="replication repressor; similar function to cro FT protein of lambda phage" FT /db_xref="UniProtKB/TrEMBL:Q8W6C8" FT /protein_id="AAL49733.1" FT /translation="MLIKLPLLGVLSMNRSEMTKNFVFREFECGLSVEEAAKLCFKTES FT EVKQWHAGEKIPPICKRLMRGTQKRAETGDVGI" FT CDS complement(150..608) FT /codon_start=1 FT /transl_table=11 FT /gene="orf152" FT /product="repressor 2" FT /note="replication repressor" FT /db_xref="InterPro:IPR021096" FT /db_xref="UniProtKB/TrEMBL:Q8W6D7" FT /protein_id="AAL49734.1" FT /translation="MQKTVRTLQKAKTRSKTSKLHTTRTCRPQKISKMRTGVRGYISDE FT EAIFLAESAGIDPEIALLGCHADRNENPRTKAIWESIAKKQNGLGLRTISMLCGDLAVS FT ISQFNEAVSYFAVCRLMVKVAINNAYKTSAFGSFINESKRNDKEFCFS" FT CDS 782..1030 FT /codon_start=1 FT /transl_table=11 FT /gene="orf82" FT /product="prim-VSK" FT /note="DNA primase; involved in replication" FT /db_xref="UniProtKB/TrEMBL:Q8W6D6" FT /protein_id="AAL49735.1" FT /translation="MANSARNKPLSQSVNPFVTIQLTSGALPRFLAYGGFNSDGSQRFS FT VTSVSTDAHKMPLPTANAILPKIKRNWPLAQISYQVK" FT CDS 1041..1220 FT /codon_start=1 FT /transl_table=11 FT /gene="orf59" FT /product="membrane glycoprotein precursor" FT /db_xref="UniProtKB/TrEMBL:Q8W6D5" FT /protein_id="AAL49736.1" FT /translation="MGISSTTTTNPTSGSTCISFGGIVSLKTGLSLSNTLPFTMALTHI FT NWLKSLTKTTTNCC" FT CDS 1233..2339 FT /codon_start=1 FT /transl_table=11 FT /gene="orf368" FT /product="rep-VSK" FT /note="replication protein" FT /db_xref="GOA:Q8W6D4" FT /db_xref="InterPro:IPR003491" FT /db_xref="UniProtKB/TrEMBL:Q8W6D4" FT /protein_id="AAL49737.1" FT /translation="MPCNHPHHDTVRPVKVDHLAFTFAYADLRHLDKSNDQDFINLQMP FT VYHEPKTRTKEQGAVCSTLEQIEHHMEAHRNKVSKMLFHRFDLFMSKIMGFRLSPMRGR FT GLHGYNDSMVISIMTGQVECGLVGIGGNNDTAFCPNQRHGVHPNTFRPYRTLRSFIGAR FT SGLGITRLVRLDLAVDDYTGNFDAKYAEKCFYEGAFRTAPRGQGPSMVPHKRITGPGAL FT MEEATIVGSRSSAIYWRIYNKKLEQKITDPDLIWYRNEVELKKCDIELLANPAASFAGI FT CPFRPSIECTPPVKFSRNKKAQGLEFMARIAWVRRQCGVALAEVIAMTQGDLGEAFGML FT IPHKHRRPDFELLGVPDSYAQLKNTLWS" FT CDS 2344..2667 FT /codon_start=1 FT /transl_table=11 FT /gene="orf107" FT /product="VSK-int" FT /note="integrase" FT /db_xref="InterPro:IPR009712" FT /db_xref="UniProtKB/TrEMBL:Q8W6D3" FT /protein_id="AAL49738.1" FT /translation="MAKSLVSSSKHSPSRGTTIAELNVLRPVETVNVEKFAQYGLGLNT FT DIPFNKQPLRIEPTYAKRLIETRAFVPNREYDIRFGSNPDDPLEVVAVELIPKDDDLKK FT YFT" FT CDS 2695..2937 FT /codon_start=1 FT /transl_table=11 FT /gene="orf80" FT /product="single strand binding protein" FT /db_xref="GOA:Q8SDJ3" FT /db_xref="UniProtKB/TrEMBL:Q8SDJ3" FT /protein_id="AAL49739.2" FT /translation="MPVCALPNSQGFLAVTDKPLNECDGGYVAVTIQDYDYLMSYTRIT FT PTDAGLAFSFGFMAVFALGYLSTKALYVGKKLINL" FT CDS 2941..3090 FT /codon_start=1 FT /transl_table=11 FT /gene="orf49" FT /product="major coat protein" FT /db_xref="GOA:Q8SDJ2" FT /db_xref="UniProtKB/TrEMBL:Q8SDJ2" FT /protein_id="AAL76098.2" FT /translation="MPLCKKFSLQSTLLVSLLSLLLLVLPSLASTWLSKASLSANALST FT KPNR" FT CDS 3151..3777 FT /codon_start=1 FT /transl_table=11 FT /gene="orf208" FT /product="memb2" FT /note="membrane protein; specific to Vibrio cholerae O139 FT strain" FT /db_xref="UniProtKB/TrEMBL:Q8SDJ1" FT /protein_id="AAL49740.2" FT /translation="MSGFIAALNSDNKGANAPFFMVMFMRKLFIISLVISLYFTALPEF FT AAYQLPFDQTKTFPTVQAAAEYYANLLGGTSCKADGNRFKIYRVKSISDPSFVIFQQET FT YLDNKCQVFSSKGDISVTLIVVDDPTTPCEASKGQTGKVGWNSYFWGSATPSRDICSSA FT LMGGCVALTGDHLCVNIDPEHKIDPSLYECEALYIVQDTPWSPSE" FT CDS 3796..4704 FT /codon_start=1 FT /transl_table=11 FT /gene="orf302" FT /product="memb3" FT /note="outermembrane lipoprotein; helps in the receptor FT binding activity; similar to proteins which play a role in FT entry of filphages into host cell" FT /db_xref="UniProtKB/TrEMBL:Q8W6D2" FT /protein_id="AAL49741.1" FT /translation="MRIALLFFLSRILTLNPEPEPEPEPQPDPRTQSSDPTAPLPGSGG FT EVINPTVPPKPPTEETPKPDVETPDPTPDSNSDVVQSVTGMNEDMNELLTRLNSDNNKQ FT LDDVNNQLLQLNTQSQRIVAQIAKQEKQDAAIYENTKALIQNLNKDVTTAVNKTTNAVN FT ALGSKVDGLSDAVDGLGEDVSAIKDAITNVGYFWGLVFLALVIESDTCTGFYESGYPDG FT IQAYFHIILKPSLKVLLIPSKTLMKIDLSHAQRPSFSIPVLHFGNFSFDDYINLDWIFG FT FVRVCMMVSTAFLCRKIIFGG" FT CDS 4705..5019 FT /codon_start=1 FT /transl_table=11 FT /gene="orf104" FT /product="VSK receptor" FT /note="accessory protein; minor protein similar to ACE of FT CTX phage" FT /db_xref="GOA:Q8W6D1" FT /db_xref="InterPro:IPR019670" FT /db_xref="UniProtKB/TrEMBL:Q8W6D1" FT /protein_id="AAL49742.1" FT /translation="MDWVIDLFNKLIEFLYRLLITLIDMLKDVFLWLIDGVLSAVNLLL FT EKALSLIEPMDVSSYLTGIPSGAAWVISAIGIPQCLGMIMSAIIVRILLQLVPFTRLGS FT " FT CDS 5023..5460 FT /codon_start=1 FT /transl_table=11 FT /gene="orf145" FT /product="VSK-tox1" FT /note="toxin protein; similar to toxin products from Vibrio FT spp. and Staphylococcus aureaus" FT /db_xref="InterPro:IPR008900" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q8SDJ0" FT /protein_id="AAL49743.2" FT /translation="MIYAIVGRPRSGKSYESVVYHIIPAIQSGRKVITNIPLRIPMFEK FT VFGESAKYLIKVIDAQFTEYGSMNRPFSKVEHYLDDWRDRARIEPLLYVIDEAHMVIPT FT RLGDPKRLEFYSMHGHYGIDIIILTQNLRKIHADIRATMIR" FT CDS 5457..6188 FT /codon_start=1 FT /transl_table=11 FT /gene="orf243" FT /product="VSK tox2" FT /note="toxin protein; Zot protein but acts mainly as FT membrane protein" FT /db_xref="GOA:Q8W6D0" FT /db_xref="UniProtKB/TrEMBL:Q8W6D0" FT /protein_id="AAL49744.1" FT /translation="MIESDYIYCAKNTAFGSKKTLYKKVRIGDTREDINIEQRTYKGTL FT FRFLSISHTQSSGAVDEAQAFDITPIWKRWPFWGSLICFIIVILILGYYFQSRKSKTID FT AQPLPSEQVEQVPLSVPPQSPSSKPQQTIKTVPVSEPLKDFNLYVSGHAKQIAYKKMSF FT SREIDTKLTFYHVYISAYQDDPIFSFSLNNIDLEKMGYQFEALTECVYRITWGSNSRVI FT TCIDESRFNQQKAETVFDHVS" FT CDS 6133..6321 FT /codon_start=1 FT /transl_table=11 FT /gene="orf62" FT /product="memb4" FT /note="membrane protein" FT /db_xref="UniProtKB/TrEMBL:Q8W6C9" FT /protein_id="AAL49745.1" FT /translation="MKADLINKRPKRYSTMFPKLVFSKKLPQAIRRTGQRASPVGQVSR FT REWQPRRDGHNVSSNTL" XX SQ Sequence 6882 BP; 1789 A; 1617 C; 1392 G; 2084 T; 0 other; catctcccgt ttcagctctc ttctgtgtgc ctctcatcag cctcttgcaa atcggtggta 60 tcttctcccc tgcgtgccat tgcttgacct cgctctcagt tttaaaacaa agtttcgccg 120 cttcttcaac gcttaaaccg cattcaaatt cacgaaaaac aaaattcttt gtcatttcgc 180 ttcgattcat tgataaaact cccaaaagcg gaagttttat aagcattatt tatagcaact 240 tttaccataa gccgacatac tgcgaagtaa gaaacagcct cgttaaactg gctgattgac 300 accgctagat caccgcaaag cattgatatt gttcttaatc ctagcccgtt ttgctttttt 360 gctatgcttt cccaaatcgc ttttgtgcgt gggttttcgt tgcggtctgc gtgacatcct 420 aacagtgcga tttcagggtc aattcctgct gattcagcta aaaaaattgc ttcttcatca 480 gatatataac ccctaactcc agttctcatt ttgcttattt tctgtgggcg acaagttcta 540 gtcgtgtgca atttgcttgt cttggaccga gtttttgcct tttgtagggt cctaacagtt 600 ttttgcatac atatttatcc ctccttttct tttctatcat agcttgccaa tccccaattt 660 gcgctattac aatccccaaa aattgggact agaatcccca taaatcgtaa tttggccacc 720 ttgggcgcta gaccttaact cttccccttg gtggtctccc caaccagtta aggcgggtta 780 tatggcaaat tcagcaagaa acaaacccct atcacaatct gttaacccat ttgtgaccat 840 ccagttaact tctggcgctc ttcctcgctt tcttgcttac ggcggcttta attcggatgg 900 ttctcagcgc ttctcagtga cttctgtttc tactgatgcc cacaaaatgc cgcttcctac 960 tgcaaacgcc atcttaccca agattaagcg taattggcct ctagctcaga tttcctatca 1020 ggttaagtaa ggtcgctatc atgggtattt catctactac gacaacgaac ccaacatcgg 1080 gatcaacgtg tatttcgttt gggggcatcg tttctttaaa aactggcctg agtttgagca 1140 ataccttgcc attcactatg gcgctgaccc atatcaactg gttgaaatca ctaacgaaaa 1200 ctacaacgaa ttgctgttaa agggggtctt tcatgccatg taaccaccct caccatgata 1260 cggttcgccc tgtcaaagtt gaccacttgg cttttacttt cgcctatgcg gacttgcgcc 1320 acttggacaa aagcaacgac caagacttta tcaatctaca gatgcccgtt tatcacgagc 1380 caaagacccg aaccaaggaa caaggcgcgg tgtgctctac cttggaacaa atcgagcatc 1440 atatggaagc gcaccgaaac aaagtgtcca agatgctctt tcatcgcttt gatttgttca 1500 tgtccaaaat catgggcttt cgcttatcgc ctatgcgtgg tcgtggcctt catggttaca 1560 acgattctat ggtcatctcg ataatgaccg gacaagttga gtgtggcctt gtcggaattg 1620 gcggaaacaa cgatacggct ttttgtccaa atcaacggca cggggtgcac ccaaacactt 1680 ttcgaccgta tcgaactcta agaagcttca ttggggctcg ctcaggtctt ggcattactc 1740 gcttagttcg tctcgacttg gccgtggacg attacaccgg aaacttcgac gccaagtatg 1800 cagagaaatg tttttatgag ggagcatttc gcactgctcc aaggggtcaa ggtccctcaa 1860 tggttcctca taaacgcatt acaggacccg gcgctttgat ggaagaagct acgattgttg 1920 gctctcgttc ctcggcgatt tactggcgta tctacaacaa aaagcttgag caaaaaatta 1980 ctgaccctga cctgatttgg tatcgaaacg aggttgagct gaaaaagtgc gatatcgagc 2040 ttttagccaa ccctgccgcc tcttttgcgg gtatctgccc ctttcggcct tctatcgagt 2100 gtacgcctcc ggttaagttt tctcgcaaca aaaaggctca aggtcttgaa tttatggctc 2160 gcatcgcatg ggttcgccgt caatgtggcg tggcgttagc ggaagttatc gctatgacgc 2220 aaggcgattt aggcgaagca ttcgggatgc ttatccctca caaacataga cgccctgact 2280 ttgaattgct cggcgtccct gattcatacg cacaactgaa aaacacacta tggagttaag 2340 gtaatggcta aatcactggt atcgtcatca aaacattccc caagtcgggg aaccactatt 2400 gcagagctaa acgttctgcg tcctgttgaa accgtcaacg ttgagaagtt tgctcaatac 2460 ggtttagggc taaacacgga tattcctttc aacaagcagc cgctgcgtat cgaacctact 2520 tacgccaagc gtttgattga aacacgcgct tttgttccta accgtgaata tgacattcgc 2580 tttggtagta accctgacga cccattggaa gtcgttgctg ttgagctcat ccccaaggat 2640 gacgacctga aaaaatactt tacttgaaac acttgaaaaa gtaaggaagt tttaatgcct 2700 gtgtgcgctc tcccaaatag tcagggattc ctagcggtta ctgacaagcc actgaatgaa 2760 tgtgacggcg gttatgttgc tgtcactatt caggattacg actacttgat gagctacaca 2820 cgcataaccc caaccgatgc aggtctggcc tttagttttg gttttatggc tgtatttgct 2880 ctcggttatc tgtccaccaa ggcgctctat gtcggcaaaa aactcattaa cctttgagga 2940 gtgccactat gcaagaaatt ttcgctgcaa tcgactttgc tggtatcgct gctctcgtta 3000 ctgctgctgg tgttgccatc attggcatca acatggcttt caaaggcatc actctcggca 3060 aacgcgctgt caacaaagcc taatcggtaa ctaagctaag cttattgccc tgcatgatat 3120 tcagttaatt attttcgcgt tgctgggtgg atgtcgggtt ttatagctgc tctcaactcc 3180 gataacaaag gggctaacgc cccttttttt atggttatgt ttatgcgcaa attatttatt 3240 atctctctgg tcattagctt atattttacc gctctccctg aattcgctgc ctatcagtta 3300 ccttttgacc aaacaaagac ttttccaact gttcaggccg ctgctgagta ttatgctaat 3360 ttacttggtg gtacttcatg taaggctgac ggtaacaggt ttaaaattta tagagttaaa 3420 tctattagcg acccctcttt tgttattttc caacaagaaa cctatttgga caacaaatgt 3480 caggtctttt catcaaaggg ggatatcagc gttactctta ttgttgttga tgatcctacc 3540 accccttgcg aggcttcaaa aggccaaaca ggaaaagtcg gttggaactc ttacttctgg 3600 ggctcggcaa ctccatcccg ggatatctgc tcttctgctt taatgggtgg ttgtgttgct 3660 ctcactggtg accatttatg tgttaatatt gaccctgagc ataaaattga cccgtctctt 3720 tatgaatgcg aagctctcta tatagttcag gatactcctt ggtccccttc tgagtgaatt 3780 cccaatttgt accgaatgag aattgctctt cttttcttcc tgagccgaat cctaaccctt 3840 aaccctgaac cagagccgga gccagaaccc caaccagacc ccagaacaca atcctctgac 3900 ccgaccgcgc cactccctgg ctctggcggt gaagtcatta accctactgt tcctcctaaa 3960 ccaccgaccg aggaaacgcc taagcctgac gtagaaacac cagaccctac acctgattca 4020 aattctgacg ttgttcaatc tgttaccgga atgaatgagg atatgaacga gttattaact 4080 cgactcaatt ctgacaacaa caagcagctt gatgatgtta acaatcagct cttgcagctc 4140 aatacacaat cacaacgtat cgttgctcag attgccaaac aggaaaaaca agatgcggcc 4200 atctacgaaa atacaaaggc acttatccag aaccttaaca aagacgtgac cacggccgtt 4260 aacaaaacca ccaatgccgt taatgctttg ggctctaaag ttgatggctt atccgatgcc 4320 gtcgatggtc ttggtgaaga tgtatcagca ataaaagatg caattactaa tgttggatac 4380 ttctgggggc tggtatttct ggcacttgta atagagtctg acacttgtac ggggttttat 4440 gaatctggtt atcctgatgg tattcaggca tattttcaca tcattttgaa accgtctctg 4500 aaagtgttac tgataccgtc aaagacttta atgaaaattg atttatctca cgctcaaagg 4560 ccatcatttt ctattccagt tctccacttt ggaaatttca gctttgacga ttatataaat 4620 cttgattgga tttttggctt tgttcgcgtg tgcatgatgg tttcaactgc ttttctatgt 4680 cgcaaaataa tatttggggg ctaaatggat tgggtaattg atttatttaa taagcttatt 4740 gagtttcttt accgcctatt aattacgctt attgatatgc taaaggatgt tttcttgtgg 4800 cttattgatg gcgttctttc tgctgtaaac cttttattag agaaagcatt atcactaata 4860 gaaccaatgg atgtttcctc ttatttaacc ggaatccctt ccggtgctgc ttgggttatt 4920 agcgctattg gcatacctca atgtttgggt atgattatgt cagcaatcat tgttcgtatc 4980 ttattacaac ttgttccatt tactcgttta ggttcttaac taatgattta tgcaattgtt 5040 ggtcgtcctc gctctggtaa gtcatacgag tctgttgttt accatattat ccctgctatc 5100 caatctggca gaaaggttat tactaacatc ccccttagaa ttcccatgtt tgaaaaagta 5160 tttggcgaaa gtgcaaaata tttgattaag gttattgatg ctcaatttac agagtatggc 5220 tctatgaatc gtcccttctc taaagttgag cattatctcg atgattggcg agacagggca 5280 agaatagagc cccttctcta cgtcattgat gaggctcaca tggttattcc tacacgcctt 5340 ggcgacccta aaagacttga gttctattca atgcacggtc actacggcat tgatattatt 5400 attctcactc aaaatctaag aaagattcat gctgatatta gagcaacgat gattagatga 5460 ttgagagtga ctatatttac tgtgctaaaa ataccgcatt cggcagtaaa aagacattat 5520 acaaaaaggt tcgcatcggt gataccagag aagatataaa catcgagcaa cgcacctata 5580 aaggaacact atttcggttt ttatcaatct cacacactca aagctctggt gctgttgatg 5640 aagctcaagc ttttgatatt actcctatct ggaagcgttg gcctttttgg ggttccttga 5700 tttgcttcat tattgttatt cttattcttg gttattactt tcaatctcga aagtcaaaaa 5760 ctatagatgc acagccttta ccttctgaac aagttgaaca agttcccttg tctgttcctc 5820 cgcaatctcc tagctctaaa cctcaacaaa cgataaaaac cgttcctgtt tctgaaccat 5880 taaaagactt taatttatat gtttctggtc atgcaaaaca aatagcttat aaaaagatgt 5940 cattctctag agagattgat actaaattaa ctttttatca cgtttatatt agtgcttatc 6000 aggatgaccc aattttctct ttttctctta acaatataga tttagaaaag atgggttatc 6060 aattcgaggc tttaacggag tgcgtttatc gtattacttg gggctctaac tctcgtgtca 6120 ttacctgtat tgatgaaagc cgatttaatc aacaaaaggc cgaaacggta ttcgaccatg 6180 tttcctaaac ttgtatttag taagaaattg ccgcaggcaa tccgtaggac ggggcaacgc 6240 gctagcccgg ttgggcaagt ttcgcgcagg gagtggcagc cccgcaggga cggccataac 6300 gttagctcca acacactctg aacctatgtt acttagggat atccgaaaca ctctaagcgt 6360 tcgcggcggt tcgcttgatt tagcgaaccc gccagtcagt caattgatca tcgatactcg 6420 agtatcagaa aaaaaacacc cttcgccctg ccaagccatt aaagaagttt caacaaacgc 6480 agtgggtggc agcattttct cgcggaactg tccacaacta ggcgcggcga gtgtcgagca 6540 agccatattt cattcgttag gcgcttgcgc tctggagggg cccattggga ggacacggag 6600 cgcaagcgcc aacccccgag ctgtatcacg ggggtagatt ccaccatact ccttggtctc 6660 accgtataaa tccctaaaaa aatagggagg ctactgcctc cctgttttta cttaatccct 6720 ttgattctag ccatagctct agcgtacttg agaagttaga acgtgtcatt gcatcgctgg 6780 tgcttgtatt tgcaagatag cgatagcggc taataactgc tgtggtgcta ccctgtcacc 6840 tgttgggaat atcaagtctc cccctttcat cctaaatccc ca 6882 //