ID AF453394; SV 1; linear; genomic RNA; STD; VRL; 5865 BP. XX AC AF453394; XX DT 14-FEB-2002 (Rel. 70, Created) DT 08-DEC-2006 (Rel. 90, Last updated, Version 5) XX DE Potato leafroll virus strain 14.2, complete genome. XX KW . XX OS Potato leafroll virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5865 RX PUBMED; 12075102. RA Guyader S., Ducray D.G.; RT "Sequence analysis of Potato leafroll virus isolates reveals genetic RT stability, major evolutionary events and differential selection pressure RT between overlapping reading frame products"; RL J. Gen. Virol. 83(Pt 7):1799-1807(2002). XX RN [2] RP 1-5865 RA Guyader S., Giblot Ducray D.; RT ; RL Submitted (28-NOV-2001) to the INSDC. RL UMR BiO3P, Institut National de la Recherche Agronomique, Domaine de la RL Motte, BP 35327, Le Rheu Cedex 35653, France XX DR MD5; 1d2f46de9e5e939f734f0d95b38b88b9. DR EuropePMC; PMC3784903; 24426276. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF01079; RF_site3. XX CC Genome sequence lacks part of non-coding region. XX FH Key Location/Qualifiers FH FT source 1..5865 FT /organism="Potato leafroll virus" FT /strain="14.2" FT /mol_type="genomic RNA" FT /country="France" FT /note="poor aphid-transmissible isolate" FT /db_xref="taxon:12045" FT 5'UTR <1..53 FT CDS 54..863 FT /codon_start=1 FT /product="P0" FT /note="natural Cter extension" FT /db_xref="GOA:Q8QYN2" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:Q8QYN2" FT /protein_id="AAL77960.1" FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLIYGYNH FT EQIYRICRSFLYVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPTI FT VIKLDDPTTAAAYRSELLRVSSSSYIQNAAGLSNGWGHDMEAFVRNAICLLELRERSIP FT QSGLRDLMGNYQHLVRSLLDACKVDHFVPLDFQHRSLMLNLARLYNQLDLQGRAKSFRA FT LTGFPVYVPSEDYLEGSSLQKELQEREGCGRIQRVFGPTETAKVCRN" FT CDS 187..2106 FT /codon_start=1 FT /product="polyprotein" FT /note="P1; proteinase; VPG" FT /db_xref="GOA:Q8QYN1" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q8QYN1" FT /protein_id="AAL77961.1" FT /translation="MNRFTAYAALFFMFSLCSTAKEAGFLHPAFNFRGTSTMSALSGDY FT SAAPTPLYKSWALPSSLNLTTQPPPPLTDRSYYELVQALISKMRLDCQTVGDMTWRHLS FT EMLFASWNSVKEVSLKAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAALSKRNYKNERAVEGYKGFSVPQKPPKS FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK FT STRNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGTHH FT QFVSVLCNTEPGYSGTGFWSSKNLLGVLKGFPLEKECNYNVMSVIPSIPGITSPNYVFE FT STAVKGRVFSDEAVKELEREASEAVKKLARFKSLAGKNWADDYDSDEDYGLEREAATNA FT PAEKTAQTNSAEKTAPSTSAEKTAPTNKPLNGQAAPSAKTNGNSDIPDVATSAPPMDKM FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKNKHNSSPPTSTQSTS FT GAPKKEAAPQASGRADTSRATTTPAPEAKPSGGKNSAKFIPSWRRKQQDSAGQKPDLKL FT NSKA" FT CDS <1524..3374 FT /codon_start=1 FT /product="putative RNA polymerase" FT /note="P2; translated by ribosomal frameshift" FT /db_xref="GOA:Q8QYN0" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q8QYN0" FT /protein_id="AAL77962.1" FT /translation="GLRSGERGCNKCARRENCSNKLSREDCSVNFSRENCSNKQAFKRA FT SGTVRQNKRQLRHPRRRYKRTTNGQNGRTDHHSYGRENQSLGDRGEDSEQGVSESPAEA FT QTKEARKAWREEQAQQFTSYFNAIYKWGAQEGGCPPGFRKSGHIPRYYHPRTRGETQWG FT QKLCQVHPELAEKTAGFGWPKAGSEAELQSLNLQAARWLQRAESVTIPGAEARKRVIEK FT TVEAYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV FT EDHKLLPVLTQLTFDRLQKMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLLKVS FT GAPSVEELCANHKEYTRPTDCTGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDAL FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH" FT CDS 3572..5725 FT /codon_start=1 FT /transl_except=(pos:4196..4198,aa:OTHER) FT /product="readthrough protein" FT /note="P5; translated by amber stop codon suppression" FT /db_xref="GOA:Q8QYM9" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q8QYM9" FT /protein_id="AAL77967.1" FT /translation="MSTVVVKGNVNGGAHQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKIYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPKXVDSGSEPGPSPQP FT TPTPTPQKHERFIAYVGIPMLTIQARENDDQIILGSLGNQRMKYIEDENRSYTNVSSEY FT YSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWN FT VGEADGVKISKLRNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTDGRFFLV FT GPAVQKTAKYNYTISYGDWTDRDMELGLITVVLDEHLEGTDSANRVRRPPREGHTYMAS FT PREPEGKPVGNKPRDETPIQTQERQPDQTPSDDVSDAGSVNSGGSTESLRLEFGVNSDS FT TYDATVDGTDWPRIPPPRHPPEPRVSGNSRTVTDFSPETDLLENWDAKHFDPGYSKEDV FT AAATIIAHGSIQDGRSMLEKREENVKNKTSSWKPPLSKAVSPAIAKLRSIRKSQPLEGG FT TLNKDATDGVSSIGSGSLTGGTLKRKVTIEDRLLQTLTTEQRLWFENLKKTNPPAATQW FT LYEYQPPPQVDRNIAEKPFQGRK" FT CDS 3572..4198 FT /codon_start=1 FT /product="major capsid protein" FT /note="P3" FT /db_xref="GOA:Q99GS6" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q99GS6" FT /protein_id="AAL77965.1" FT /translation="MSTVVVKGNVNGGAHQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKIYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPK" FT CDS 3597..4067 FT /codon_start=1 FT /product="putative movement protein" FT /note="P4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q99GS5" FT /protein_id="AAL77966.1" FT /translation="MSMVVHTNQEGEEGNPFAGALTEFSQWLWSRPLGNPGAEDAEEEA FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS FT QASYFSSSARPLPPPPVPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKFIKRG" FT CDS 5130..5318 FT /codon_start=1 FT /product="P6" FT /db_xref="UniProtKB/TrEMBL:Q8QYM8" FT /protein_id="AAL77963.1" FT /translation="MLQSMVQTGPEFLHQGTHLNLEFPAIQELLLTFLRKPTYWRIGMP FT NTSTLVIPKKMSLLLLL" FT CDS 5348..5725 FT /codon_start=1 FT /product="P7" FT /db_xref="GOA:Q8QYM7" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q8QYM7" FT /protein_id="AAL77964.1" FT /translation="MLEKREENVKNKTSSWKPPLSKAVSPAIAKLRSIRKSQPLEGGTL FT NKDATDGVSSIGSGSLTGGTLKRKVTIEDRLLQTLTTEQRLWFENLKKTNPPAATQWLY FT EYQPPPQVDRNIAEKPFQGRK" XX SQ Sequence 5865 BP; 1628 A; 1492 C; 1426 G; 1319 T; 0 other; gaaattgcag ctttagcgca taaactctac actcattgca aacgttatag catatgattg 60 tattgaccca gtctggaacc ttgctttttg accaaagatt taaactctca aagtttctct 120 tcgttgtcat tgcaacaggc tttcctcttc tcctgcagca agcgagctta atctacggct 180 ataatcatga acagatttac cgcatatgcc gctcttttct ttatgttctc cctttgctca 240 actgcaaaag aggcaggatt tctacatccg gccttcaact tccgaggcac ctccactatg 300 agtgccttga gtggggatta ctctgcggca cccaccccgc tatacaaatc gtgggcccta 360 ccatcgtcat taaacttgac gacccaacca ccgccgccgc ttacagatcg gagctactac 420 gagttagttc aagctcttat atccaaaatg cggctggatt gtcaaacggt tggggacatg 480 acatggaggc atttgtcaga aatgctattt gcctcctgga actccgtgaa agaagtatcc 540 ctcaaagcgg cctccgtgac cttatgggca attatcagca tttggttcgg tctctattgg 600 acgcttgcaa ggttgatcac tttgttcctc tggactttca gcatagaagc cttatgctta 660 atcttgctcg gttgtataac cagcttgatc tacaagggcg cgctaagtct ttcagagcac 720 ttaccggttt tcctgtttat gtcccctctg aagattattt ggagggcagc tctctccaaa 780 aggaattaca agaacgagag ggctgtggaa ggatacaaag ggttttcggt cccacagaaa 840 ccgccaaagt ctgccgtaat tgaactacaa catgaaaacg gcagccatct cgggtacgcg 900 aactgcattc gtttgtacag tggagagaac gccttggtga cagctgaaca ctgtctagaa 960 ggcgctttcg caacgtcgtt gaaaactgga aacaggattc cgatgtcgac tttctttccc 1020 attttcaaaa gtacccgtaa tgatatctcc atactagtag gtccacccaa ctgggaaggt 1080 ctactatcag tcaaaggagc tcatttcatt acagctgaca aaatcggcaa aggtcctgcc 1140 tctttctaca ctcttgagaa aggggagtgg atgtgccata gtgccaccat agatggaacc 1200 catcaccagt tcgtgtctgt tttatgcaac accgaacccg gatattccgg aacagggttt 1260 tggtcttcaa agaatctgct tggtgtgctt aaaggcttcc cactggaaaa ggagtgtaac 1320 tacaatgtta tgtctgttat accctcgatc ccaggaatca cttccccaaa ttatgtgttt 1380 gagtcgaccg ccgtaaaagg ccgcgtcttc tcggatgaag ctgtgaaaga gctggagcgg 1440 gaagcatccg aagccgtcaa gaagcttgcc agatttaaat cacttgctgg caagaactgg 1500 gctgatgatt atgactccga tgaggattac ggtctggaga gagaggctgc aacaaatgcg 1560 cccgcagaga aaactgctca aacaaactca gcagagaaga ctgctccgtc aacttcagca 1620 gagaaaactg ctccaacaaa caagccttta aacgggcaag cggcaccgtc cgccaaaaca 1680 aacggcaact ccgacatccc cgacgtcgct acaagcgcac caccaatgga caaaatggtc 1740 gaacagatca tcacagctat ggtagggaga atcaatctct cggagataga ggagaagata 1800 gtgagcaggg tgtctcagaa agccctgcag aagcccaaac aaaagaagcg cggaaggcgt 1860 ggagggaaga acaagcacaa cagttcacct cctacttcaa cgcaatctac aagtggggcg 1920 cccaagaagg aggctgcccc ccaggcttca ggaagagcgg acacatcccg cgctactacc 1980 acccccgcac cagaggcgaa acccagtggg ggcaaaaact ctgccaagtt catcccgagc 2040 tggcggagaa aacagcagga ttcggctggc caaaagccgg atctgaagct gaactccaaa 2100 gcctgaatct acaggctgcc aggtggctcc aacgcgcgga gtcggtcact atccctggcg 2160 cagaagcaag aaagcgcgtg attgagaaaa cggtggaggc atacagaaat tgtgtaacta 2220 acgccccact gtgctccctt aaatccaaac tggattgggc tggctttcaa caagatatcc 2280 gtgaagcagt ccagtccctt gagctagacg ctggtgtagg cattccctat atcgcgtatg 2340 gcctccccac acaccgagga tgggtagagg accataagct tctcccagtg ctcactcagc 2400 tgacctttga ccgtttacag aagatgtcag aggccagctt tgaggatatg agcgcagaag 2460 agctggttca agaagggctc tgtgatccta tcagactatt tgtcaaagga gagccccaca 2520 aacagagcaa actcgatgaa ggccgctacc gcctcatcat gtctgtttcc ttggtggatc 2580 aactggtagc ccgggttctg ttccaaaatc agaacaaaag ggaaatttcc ctgtggaggt 2640 ctgtgccttc caaacccggt tttggccttt caactgacac tcaaactgct gaattcttgg 2700 agtgtctttt aaaggtgtct ggagcgccat ctgtggaaga attgtgtgca aatcacaagg 2760 agtacacgcg cccaaccgac tgtaccggtt tcgactggtc agtcgcgtat tggatgctgg 2820 aggatgatat ggaggtgaga aatcgcctga catttaataa cacccagctc accaagcgcc 2880 ttcgggctgc ctggttgaag tgcataggaa actccgtcct gtgcctgtcc gatggcactt 2940 tactcgccca aactgttccc ggtgtgcaaa agagcggaag ttacaataca agttcttcca 3000 actctagaat ccgggttatg gctgcctatc actgtggcgc cgactgggca atggccatgg 3060 gggacgatgc tctcgaagcc cccaactccg acctagagga gtataaaaca ctaggtttca 3120 aagtcgaggt aggtcgagaa ctcgaattct gttcacacat tttcagaaat ccgaccctcg 3180 ccgttccggt caacaccaac aaaatgcttt acaagttgat ccatggttat aatccggaat 3240 gtggcaatcc agaagtgatt caaaattatc tggctgcagt attctctgtg ctgcaggaac 3300 tccgacacga tcgtgagctc gttgccaagc tccaccagtg gttggttccg agtgccacca 3360 caaaagaaca ctgaaggagc tcactaaaac tagccaagca tacgcgagtt gcaagcattg 3420 gaagttcaag cctcgttaca tcaaccggac aaaatagatt ttaaattctt agcgggattt 3480 gctttaggat tctcatccgc aatcccattt tcagtagccg gtttatattt tgtttaccta 3540 aagatttcct cccacgtgcg atcaattgtt aatgagtacg gtcgtggtta aaggaaatgt 3600 caatggtggt gcacaccaac caagaaggcg aagaaggcaa tcccttcgca ggcgcgctaa 3660 cagagttcag ccagtggtta tggtcacggc ccctgggcaa cccaggcgcc gaagacgcag 3720 aagaggaggc aatcgccgct caagaagaac tggagttccc cgaggacgag gctcaagcga 3780 gacattcgtg tttacaaagg acaacctcat gggcaactcc caaggaagtt tcaccttcgg 3840 gccgagtcta tcagactgtc cggcattcaa ggatggaata ctcaaggcct accatgagta 3900 taagatcaca agcatcttac ttcagttcgt cagcgaggcc tcttccacct cctccggttc 3960 catcgcttat gagttggacc cccattgcaa agtatcatcc ctccagtcct acgtcaacaa 4020 gttccaaatt acgaagggcg gcgccaaaat ttatcaagcg cggatgataa acggggtaga 4080 atggcacgat tcttctgagg atcagtgccg gatactgtgg aagggaaatg gaaaatcttc 4140 agataccgca ggatccttca gagtcaccat tagggtggct ttgcaaaacc ccaaataggt 4200 agactccgga tcagagcctg gtccaagccc acaaccaaca cccactccaa ctccccagaa 4260 gcacgagcga tttattgctt acgttggcat acctatgcta accattcagg ccagggagaa 4320 cgacgaccaa atcatattgg gttccttagg gaaccaaagg atgaaatata tagaggacga 4380 gaaccggagc tatacaaatg ttagctctga gtattactct caatcgagca tgcaagccgt 4440 ccctatgtat tacttcaatg tcccgaaagg gcaatggtca gtcgacatca gctgtgaagg 4500 gtatcaaccc actagcagca cctcggatcc aaaccggggt aggagtgacg ggatgatcgc 4560 gtattcaaac gcggactccg attattggaa tgttggtgaa gcggatggtg taaaaatttc 4620 gaagctacgc aacgataaca cctaccgcca aggtcaccca gaacttgaaa ttaactcgtg 4680 tcattttcgc gagggccaac tccttgaacg ggacgctaca attagcttcc acgttgaagc 4740 gcccactgat gggcgattct tcctcgttgg tcccgctgtc cagaaaaccg caaagtataa 4800 ctatactatc tcatacggtg actggacgga ccgagacatg gaactggggc tgatcaccgt 4860 ggtgcttgat gagcatttag aaggcactga ttcggctaac agagtgcggc ggcccccacg 4920 ggagggccac acctatatgg cctcgccgcg cgaaccggaa ggaaaaccgg ttggaaataa 4980 accaagggac gaaaccccga tacaaacgca ggaaagacaa cctgatcaaa ctccgtctga 5040 cgacgtatcc gatgctggtt cggtaaacag cggcggctca actgagtcgc tgcgattgga 5100 gttcggggta aactcagata gtacctacga tgctacagtc gatggtacag actggcccag 5160 aattcctcca ccaaggcacc cacctgaacc tagagtttcc ggcaattcaa gaactgttac 5220 tgacttttct ccggaaaccg acctattgga gaattgggat gccaaacact tcgaccctgg 5280 ttattccaaa gaagatgtcg ctgctgctac tattatagcg cacggcagta ttcaagatgg 5340 gcgaagtatg ttggagaaga gagaggaaaa tgtcaagaac aaaacctcct cctggaagcc 5400 cccgttatct aaagcggtga gcccagccat agccaaattg cgctcgattc gcaaatccca 5460 acctctcgag ggagggaccc ttaataaaga cgccactgat ggtgtctcat ctattggcag 5520 tggttctcta acaggtggca cgctcaagag gaaggtaact attgaagatc gtttactgca 5580 gaccttaaca actgaacaaa ggctgtggtt cgagaatttg aagaaaacta accctccagc 5640 tgctacccaa tggctgtatg aatatcagcc acctccccaa gtagatagaa acatagctga 5700 aaagccattt caagggagga aatgagtcga ctcacgactt aaaactgagt gtccgccgga 5760 cattaagcgg aacgaaagcc gaaaggtgat taggctctca acgcctgcta gagaccgtcg 5820 aaagacgcga ctgtgtagcc aggatcctct tacagggttg tgtag 5865 //