ID AF453393; SV 1; linear; genomic RNA; STD; VRL; 5865 BP. XX AC AF453393; XX DT 14-FEB-2002 (Rel. 70, Created) DT 08-DEC-2006 (Rel. 90, Last updated, Version 5) XX DE Potato leafroll virus strain CU87, complete genome. XX KW . XX OS Potato leafroll virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5865 RX PUBMED; 12075102. RA Guyader S., Ducray D.G.; RT "Sequence analysis of Potato leafroll virus isolates reveals genetic RT stability, major evolutionary events and differential selection pressure RT between overlapping reading frame products"; RL J. Gen. Virol. 83(Pt 7):1799-1807(2002). XX RN [2] RP 1-5865 RA Guyader S., Giblot Ducray D.; RT ; RL Submitted (28-NOV-2001) to the INSDC. RL UMR BiO3P, Institut National de la Recherche Agronomique, Domaine de la RL Motte, BP 35327, Le Rheu Cedex 35653, France XX DR MD5; ef044713cb2f127bab7f66800dd51de9. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF01079; RF_site3. XX CC Genome sequence lacks part of non-coding region. XX FH Key Location/Qualifiers FH FT source 1..5865 FT /organism="Potato leafroll virus" FT /strain="CU87" FT /mol_type="genomic RNA" FT /country="Cuba" FT /db_xref="taxon:12045" FT 5'UTR <1..53 FT CDS 54..797 FT /codon_start=1 FT /product="P0" FT /db_xref="GOA:Q8QYP0" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:Q8QYP0" FT /protein_id="AAL77952.1" FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLIYGYNH FT EQIYRICRSFLYVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPTI FT VIKLDDPTTAAAYRSELLRVSSSSYIQNAAGLSNGWGHDMEAFVRNAICLLELLERNIP FT QSGLRDLMGNHQHLVRSLLDACEVDHFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA FT LTGFPVYVPSEDYLEGSLLQKELQE" FT CDS 187..2106 FT /codon_start=1 FT /product="polyprotein" FT /note="P1; proteinase; VPG" FT /db_xref="GOA:Q8QYN9" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q8QYN9" FT /protein_id="AAL77953.1" FT /translation="MNRFTAYAALFFMFSLCSTAKEAGFQHPAFNFRGTSIMSALSGDY FT SAAPTPLYKSWALPSSLNLTTQPPPPLTDRSYYELVQALISKMRLDCQTVGDMTWRHLS FT EMLFASWNSLKEISLKAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS FT AVIELQHGNGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK FT SARNDISILVGPSNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE FT STAVKGRVFSDEAVKELEREASEAVKKLAIFKSLTGKNWADDYDSDEDYGLEREAATNA FT PAEKTAQTNSAEKTAPSTSAERTAPTNKPLNGQAAPSAKINGNSDIPDVATSAPPMDKM FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKNKHNSSPPTSTQSTS FT GAPKKEAAPQASGSAGTSRATTTPAPEAKPSGGKDSAKFIPSWRRKQQDSAGQKPDLKL FT NSKA" FT CDS <1524..3374 FT /codon_start=1 FT /product="putative RNA polymerase" FT /note="P2; translated by ribosomal frameshift" FT /db_xref="GOA:Q8QYN8" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q8QYN8" FT /protein_id="AAL77954.1" FT /translation="GLRSGERGCNKCARRENCSNKLSREDCSINFSRENCSNKQAFKWA FT SGTVRQNKRQLRHPRRRYKRTTNGQNGRTDHHSYGGENQSLGDRREDSEQGVSESPAEA FT QTKEARKAWREEQAQQFTSYFNAIYKWGAQEGGCPPGFRKCGYIPRYYHPRTRGETQWG FT QRLCQVHPELAEKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK FT TVEAYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV FT EDHKLLPVLTQLTFDRLQGMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKVS FT GAPSVEELCANHKEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDAL FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH" FT CDS 3572..5725 FT /codon_start=1 FT /transl_except=(pos:4196..4198,aa:OTHER) FT /product="readthrough protein" FT /note="P5; translated by amber stop codon suppression" FT /db_xref="GOA:Q8QYN6" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q8QYN6" FT /protein_id="AAL77959.1" FT /translation="MSTVVVKGNVNGGAQQPRRRRRQPLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPKXVDSGSEPGPSPQP FT TPTPTPQMHERFIAYVGIPMLTIQARENDDQIILGSLGNQRMKYIEDENQNYTNVSSEY FT YSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWN FT VGEADGVKISKLRNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTDGRFFLV FT GPAIQKTAKYNYTISYGDWTDRDMELGLITVVLDEHLEGTGSANRVRRPPREGHTYMAS FT PREPEGKPVENKPRDETPIQTQERQPDQTPSDDVSDAGSVNSGGSTESLRLEFGVNSDS FT TYDATVDGTDWPRIPPPRHPPEPRVSGNPRTVTDFSTKADLLENWDAEHFDPGYSKEDV FT AAATIIAHGSIQDGRSMLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQSLEGG FT TLKKDATDGVSSIGSGSLTGGTLKRKATIEERLLQTLTTEQRLWYENLKKTNPLAATQW FT LFEYQPPPQVDRNLAEKPFQGRK" FT CDS 3572..4198 FT /codon_start=1 FT /product="major capsid protein" FT /note="P3" FT /db_xref="GOA:Q8QYN7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q8QYN7" FT /protein_id="AAL77957.1" FT /translation="MSTVVVKGNVNGGAQQPRRRRRQPLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPK" FT CDS 3597..4067 FT /codon_start=1 FT /product="putative movement protein" FT /note="P4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q8QYN5" FT /protein_id="AAL77958.1" FT /translation="MSMVVHNNQEGEEGNPFAGALTEFSQWLWSRPLGNPGAEDVEEEA FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS FT QASYFSSSARPLPPPPAPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKLIKRG" FT CDS 5130..5249 FT /codon_start=1 FT /product="P6" FT /db_xref="UniProtKB/TrEMBL:Q8QYN4" FT /protein_id="AAL77955.1" FT /translation="MLQSMVQTGPEFLHQGTHLNLEFPAIQELSLTFLRKPIY" FT CDS 5348..5725 FT /codon_start=1 FT /product="P7" FT /db_xref="GOA:Q8QYN3" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q8QYN3" FT /protein_id="AAL77956.1" FT /translation="MLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQSLEGGTL FT KKDATDGVSSIGSGSLTGGTLKRKATIEERLLQTLTTEQRLWYENLKKTNPLAATQWLF FT EYQPPPQVDRNLAEKPFQGRK" XX SQ Sequence 5865 BP; 1627 A; 1489 C; 1428 G; 1321 T; 0 other; gaaattgcag ctttagcgca taaactctac actcattgca aacgttatag catatgattg 60 tattgactca gtctggaacc ttgctttttg accaaagatt taaactctca aagtttctct 120 tcgttgtcat tgcaacaggc tttcctcttc tcctgcagca agcgagctta atttacggct 180 acaatcatga acagatttac cgcatatgcc gctcttttct ttatgttctc cctttgctca 240 actgcaaaag aggcaggatt tcaacatccg gccttcaact tccgaggcac ctccattatg 300 agtgccttga gtggggatta ctctgcggca cccaccccgc tatacaaatc gtgggcccta 360 ccatcgtcat taaacttgac gacccaacca ccgccgccgc ttacagatcg gagctactac 420 gagttagttc aagctcttat atccaaaatg cggctggatt gtcaaacggt tggggacatg 480 acatggaggc atttgtcaga aatgctattt gcctcctgga actccttgaa agaaatatcc 540 ctcaaagcgg cctccgtgac cttatgggca atcatcagca tttggttcgg tctctattgg 600 acgcttgcga ggttgatcac tttgttcctc tggactttca gcatagaagc cttatgctta 660 attttgctcg gttgtataac cagcttgatc tacaagggcg cgctaagtct ttcagagcac 720 ttaccggttt tcctgtttat gtcccctctg aagattattt ggagggcagc cttctccaaa 780 aggaattaca agaatgagag ggctgtggaa ggatacaaag ggttttcggt cccacagaaa 840 ccgccaaagt ctgccgtaat tgaattacaa catggaaacg gcagccatct cgggtacgcg 900 aactgcattc gcttgtacag tggagagaac gccttggtga cagctgaaca ctgtctagaa 960 ggcgcttttg cgacgtcgtt gaaaactgga aacaggattc cgatgtcgac tttctttccc 1020 atttttaaaa gtgcccgtaa tgatatctcc atactagtag gtccatccaa ctgggaaggc 1080 ctactatcag tcaaaggagc tcatttcatt acagctgaca aaatcggcaa aggtcctgcc 1140 tctttctaca ctcttgagaa aggggagtgg atgtgccata gtgccaccat agatggagcc 1200 catcaccagt tcgtgtctgt tttatgcaac actggacccg ggtattccgg aacagggttt 1260 tggtcttcaa agaatctgct tggagtgctt aaaggcttcc cactggaaga ggagtgtaac 1320 tacaatgtta tgtctgttat accctcgatc ccaggaatca cttccccaaa ctacgtgttt 1380 gagtcgaccg ccgtaaaagg ccgcgtcttc tcggatgaag ctgtgaaaga gctagagcgg 1440 gaagcatccg aagccgtcaa gaagcttgcc atatttaaat cacttaccgg caagaactgg 1500 gctgatgatt atgactccga tgaggattac ggtctggaga gagaggctgc aacaaatgcg 1560 cccgcagaga aaactgctca aacaaactca gcagagaaga ctgctccatc aacttcagca 1620 gagagaactg ctccaacaaa caagccttta aatgggcaag cggcaccgtc cgccaaaata 1680 aacggcaact ccgacatccc cgacgtcgct acaagcgcac caccaatgga caaaatggtc 1740 gaacagatca tcacagctat ggtggggaga atcaatctct cggagataga agagaagata 1800 gtgagcaggg tgtctcagaa agccctgcag aagcccaaac aaaagaagcg cggaaggcgt 1860 ggagggaaga acaagcacaa cagttcacct cctacttcaa cgcaatctac aagtggggcg 1920 cccaagaagg aggctgcccc ccaggcttca ggaagtgcgg gtacatcccg cgctactacc 1980 acccccgcac cagaggcgaa acccagtggg ggcaaagact ctgccaagtt catcccgagc 2040 tggcggagaa aacagcagga ttcggctggc caaaagccgg atctgaagct gaactccaaa 2100 gcctgaatct acaggctgcc aggtggctcc aacgcgcgga gtcggccact atccctggcg 2160 cagaagcaag aaagcgcgtg attgagaaaa cagtggaggc atacagaaat tgtgtaacta 2220 acgccccact gtgctccctt aaatccaaac tggattgggc tggctttcaa caagatatcc 2280 gtgaagcagt ccagtccctt gagctagacg ctggtgtagg cattccctat atcgcgtatg 2340 gcctccccac acaccgagga tgggttgagg accataagct tctcccagtg ctcactcagc 2400 tgacctttga ccgactacag gggatgtcag aggccagctt tgaggatatg agcgcagaag 2460 agctggttca agaagggctc tgtgacccta tcagactatt tgtcaaagga gagccccaca 2520 aacagagcaa actagatgaa ggccgctacc gcctcatcat gtctgtttcc ttggtggatc 2580 aactggtagc ccgggttctg ttccaaaatc agaacaaaag ggaaatttcc ctgtggaggt 2640 ctgtgccttc caaacccggt tttggccttt caactgacac tcaaactgct gaattcttgg 2700 agtgtcttca aaaagtgtct ggagcgccat ctgtggaaga attgtgtgca aatcacaagg 2760 agtacacgcg cccaaccgac tgttccggtt tcgactggtc agtcgcgtat tggatgctgg 2820 aggatgatat ggaggtgaga aatcgcctga catttaataa cacccagctc accaagcgcc 2880 ttcgagctgc ctggttgaag tgcataggaa actccgtcct gtgcctgtcc gatggcactt 2940 tacttgccca aactgttccc ggtgtgcaaa agagcggaag ttacaataca agttcctcca 3000 actctagaat ccgggttatg gctgcctatc actgtggcgc cgactgggca atggctatgg 3060 gggacgatgc tctcgaagcc cccaactccg acctggagga gtataaaaca ctaggtttca 3120 aagtcgaggt aggtcgagaa ctcgaattct gttcacacat cttcagaaat ccgaccctcg 3180 ccgttccggt caacaccaac aaaatgcttt acaagttgat ccatggttat aatccggaat 3240 gtggcaatcc agaagtgatt caaaactatc tggctgcggt attctctgtg ctgcaggaac 3300 tccgacatga tcgtgagctc gttgccaagc tccaccagtg gttggttccg agtgccacca 3360 caaaagaaca ctgaaggagc tcactataac tagccaagca tacacgagtt gcaagcattg 3420 gaagttcaag cctcgttaca tcaaccggac aaaatagatt ataaattctt agcgggattt 3480 gctttaggat tctcatccgc aattccattt tcagtagccg gtttatattt cgtttaccta 3540 aagatttcct cccacgtgcg atcaatcgtt aatgagtacg gtcgtggtta aaggaaatgt 3600 caatggtggt gcacaacaac caagaaggcg aagaaggcaa ccccttcgca ggcgcgctaa 3660 cagagttcag ccagtggtta tggtcacggc ccctgggcaa cccaggcgcc gaagacgtag 3720 aagaggaggc aatcgccgct caagaagaac tggagttccc cgaggacgag gctcaagcga 3780 gacattcgtg tttacaaagg acaacctcat gggcaactcc caaggaagtt tcaccttcgg 3840 gccgagtcta tcagactgtc cggcattcaa ggatggaata ctcaaggcct accatgagta 3900 taagatcaca agcatcttac ttcagttcgt cagcgaggcc tcttccacct cctccggctc 3960 catcgcttat gagttggacc cccattgcaa agtatcatcc ctccagtcct acgtcaacaa 4020 gttccaaatt acgaagggcg gcgccaaaac ttatcaagcg cggatgataa acggggtaga 4080 atggcacgat tcttctgagg atcagtgccg gatactgtgg aaaggaaatg gaaaatcctc 4140 agacaccgca ggatccttca gagtcaccat cagggtggct ttgcaaaacc ccaaataggt 4200 agactccgga tcagagcctg gtccaagccc acaaccaaca cctactccaa ctccccagat 4260 gcacgagcga tttattgctt acgttggcat acctatgctg accattcagg ccagggagaa 4320 cgacgaccaa atcatattgg gttccttagg gaaccaaagg atgaaatata tagaggacga 4380 gaaccagaac tacacaaatg ttagttctga gtattactct caatcgagta tgcaagccgt 4440 ccctatgtat tactttaatg tcccgaaagg gcaatggtca gtcgacatca gctgcgaagg 4500 gtatcaaccc actagcagca cctcggatcc aaaccggggt aggagtgacg ggatgatcgc 4560 gtattcaaac gcggattccg attattggaa tgttggtgaa gcggatggtg tcaaaatttc 4620 gaagctacgc aacgataaca cctaccgcca aggtcaccca gaacttgaaa ttaactcgtg 4680 tcattttcgc gagggccaac tccttgaacg ggatgctaca attagcttcc acgttgaagc 4740 gcctactgat gggcgattct ttctcgttgg tcccgctatc cagaaaaccg caaagtataa 4800 ctatactatc tcatacggtg actggacgga ccgagacatg gaactggggc tgatcaccgt 4860 ggtgcttgat gaacatttag aaggcactgg ttcggctaac agagtgcggc ggcccccacg 4920 ggagggccac acctatatgg cttcgccgcg cgaaccggaa ggaaaaccgg ttgaaaataa 4980 accaagggac gaaaccccga tacaaacgca ggaaagacaa cctgatcaaa ctccgtctga 5040 cgacgtatcc gatgctggtt cggtaaacag cggcggctca actgagtcgc tgcgattgga 5100 gttcggggta aactcagata gtacctacga tgctacagtc gatggtacag actggcccag 5160 aattcctcca ccaaggcacc cacctgaacc tagagtttcc ggcaatccaa gaactgtcac 5220 tgacttttct acgaaagccg atctattaga gaattgggat gccgaacact tcgaccctgg 5280 ttattccaaa gaagatgtcg ctgctgctac cattatagcg cacggcagta ttcaagatgg 5340 gcgaagtatg ttagagaaga gagaggaaaa tgtcaagaac aaaacctctt cctggaagcc 5400 cccgctacct aaagcggtga gcccagccat agccaaattg cgctcgattc gcaaatccca 5460 atccctcgag ggagggaccc ttaagaaaga cgccactgat ggtgtctcat ctattggcag 5520 tggttctcta acaggtggca cgcttaagag gaaggcaact attgaagagc gtttactgca 5580 gaccttaaca actgaacaaa ggctgtggta cgagaatttg aagaaaacta accctctagc 5640 tgctacccaa tggctgtttg aatatcagcc acctccccaa gtagatagaa atttagctga 5700 aaagccattc caagggagga aatgagtcga ctcacgactt aaaactgagt gtccgccgga 5760 cattaagcgg aacgaaagcc gaaaggtgat taggctctca acgcctgcta gagaccgtcg 5820 aaagacgcga ctgtgtagcc aggatcctct tacagggttg tgtag 5865 //