ID AF453392; SV 1; linear; genomic RNA; STD; VRL; 5865 BP. XX AC AF453392; XX DT 14-FEB-2002 (Rel. 70, Created) DT 08-DEC-2006 (Rel. 90, Last updated, Version 5) XX DE Potato leafroll virus strain CIP01, complete genome. XX KW . XX OS Potato leafroll virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5865 RX PUBMED; 12075102. RA Guyader S., Ducray D.G.; RT "Sequence analysis of Potato leafroll virus isolates reveals genetic RT stability, major evolutionary events and differential selection pressure RT between overlapping reading frame products"; RL J. Gen. Virol. 83(Pt 7):1799-1807(2002). XX RN [2] RP 1-5865 RA Guyader S., Giblot Ducray D.; RT ; RL Submitted (28-NOV-2001) to the INSDC. RL UMR BiO3P, Institut National de la Recherche Agronomique, Domaine de la RL Motte, BP 35327, Le Rheu Cedex 35653, France XX DR MD5; b57563af3962256a64944409d867aa9c. DR EuropePMC; PMC3784903; 24426276. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC5104775; 27544267. DR RFAM; RF01079; RF_site3. XX CC Genome sequence lacks part of non-coding region. XX FH Key Location/Qualifiers FH FT source 1..5865 FT /organism="Potato leafroll virus" FT /strain="CIP01" FT /mol_type="genomic RNA" FT /country="Peru" FT /db_xref="taxon:12045" FT 5'UTR <1..53 FT CDS 54..797 FT /codon_start=1 FT /product="P0" FT /db_xref="GOA:Q8QYP7" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:Q8QYP7" FT /protein_id="AAL77945.1" FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLLYGYNH FT EQIYRICRSFLYVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPSI FT IVELDNPTTAAAYRSELLRISSSSYVKNSVGSSNGWGHDMEAFVRNAICLLELRERSIP FT QSGLRNLMGNYQHLVRSLLDACTVDYFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA FT LTGFPVYVPSEDYLEGSFLQKELQE" FT CDS 187..2106 FT /codon_start=1 FT /product="polyprotein" FT /note="P1; proteinase; VPG" FT /db_xref="GOA:Q8QYP6" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q8QYP6" FT /protein_id="AAL77946.1" FT /translation="MNRFTAFAALFFMFSLCSTAKEAGFQHPAFNFRGTSIMSVSSGDY FT SAAPTPLYKSWALPSLSNSTTPPPPLLTDRSYYELVQALMLKIRLDLQMVGDMTWRHLS FT EMLFASWNSVREVSLRAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK FT STRNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE FT STAVKGRVFSDEVVKELEREASEAVKKLARFKSLTGKNWADDYDSDEDYGLEREAATNA FT PAEKTAQTNSAEKTAPSTSAERTASTNKPLNGQAAPSATTNGNSDIPDVATSAPPMDKM FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKNKHNSSPPTSTQSTS FT GAPKKEAAPQASGSADTSRATTTPAPKAKPSGGKNSAKFIPSWRRKQQDSAGQKPDLKL FT NSKA" FT CDS <1524..3374 FT /codon_start=1 FT /product="putative RNA polymerase" FT /note="P2; translated by ribosomal frameshift" FT /db_xref="GOA:Q8QYP5" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q8QYP5" FT /protein_id="AAL77947.1" FT /translation="GLRPGERGCYKCARRENCSNKLSREDCSINFSRENCFNKQAFKWA FT SGTVRHNKRQLRHPRRRYKRTTNGQNGRTDHHSYGGENQSLGDRGEDSEQGVSESPAEA FT QTKEARKAWREEQAQQFTSYFNAIYKWGAQEGGCPPGFRKCGHIPRYYHPRTKGETQWG FT QKLCQVHPELAEKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK FT TVEAYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV FT EDHKLLPVLTQLTFDRLQKMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKVS FT GAPSVEELCVNHKEYMRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGANWAMAMGDDAL FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH" FT CDS 3572..5725 FT /codon_start=1 FT /transl_except=(pos:4196..4198,aa:OTHER) FT /product="readthrough protein" FT /note="P5; translated by amber stop codon suppression" FT /db_xref="GOA:Q8QYP3" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q8QYP3" FT /protein_id="AAL77950.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRSNRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPKXVDSGSEPGPSPQP FT TPTPTPQKHERFIAYVGIPMLTIQARESDDQIILGSLGSQRMKYIEDENQNYTNISSEY FT YSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWN FT VGEADGVKISKLRNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTDGRFFLV FT GPAIQKTAKYNYTISYGDWTDRDMELGLITVVLDEHLEGTGSANRVRRPPREGHTYMAS FT PREPEGKPVGNKPRDETPIQTQERQPDQTPSNDVSDAGSVNTGGSTESLQLEFGVNSDS FT TYDATVDGTDWPRIPPPRHPPEPRVSGNSRTVNDFSPKADLLENWDAEHFDPGYSKEDV FT AAATIIAHGSIQDGRSILEKREENVKNKTSSWKLPLPKAVSPAIATLRSIRKSQPLEGG FT TLKKDATDGVSSIGSGSLTGGTLKRKVTIEERLLQTLTTEQRLWYENLKKTNPLAATQW FT LYEYQPPPQVDRNIAEKPFQGRK" FT CDS 3572..4198 FT /codon_start=1 FT /product="major capsid protein" FT /note="P3" FT /db_xref="GOA:Q8QYP4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q8QYP4" FT /protein_id="AAL77948.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRSNRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPK" FT CDS 3597..4067 FT /codon_start=1 FT /product="putative movement protein" FT /note="P4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q8QYP2" FT /protein_id="AAL77949.1" FT /translation="MSMVVYNNQGGEEGNPFVGALTEFSQWLWSRPLGNPGVEDVEEEA FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS FT QASYFSSSARPLPPPPVPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKLIKRG" FT CDS 5130..5318 FT /codon_start=1 FT /product="P6" FT /db_xref="UniProtKB/TrEMBL:Q8QYP1" FT /protein_id="AAL77951.1" FT /translation="MLQSMVQTGPEFLHQGTHLNLEFPAIQELLMTFLRKPIYWRIGMP FT NTSTLVIPKKMSLLLLL" XX SQ Sequence 5865 BP; 1628 A; 1473 C; 1425 G; 1339 T; 0 other; gaaattgcag ctttagcgca taagctttac actcattgcg aacgttatag catatgattg 60 tattgactca gtctggaacc ttgcttttcg accaaagatt taaactttca aagtttcttt 120 ttgttgtaat tgcaacaggt tttcctctcc tcctgcaaca agcgagctta ctttacggtt 180 acaatcatga acagatttac cgcatttgcc gctcttttct ttatgttctc cctttgctca 240 actgcaaaag aggcaggatt tcaacatccg gccttcaact tccgaggcac ctccattatg 300 agtgtctcga gtggggatta ctctgcggca cccaccccgc tatacaaatc gtgggccctt 360 ccatcattgt cgaactcgac aaccccacca ccgccgctgc ttacagatcg gagctactac 420 gaattagttc aagctcttat gttaaaaatt cggttggatc ttcaaatggt tggggacatg 480 acatggaggc atttgtcaga aatgctattt gcctcctgga actccgtgag agaagtatcc 540 ctcagagcgg cctccgtaac cttatgggca attatcagca tttggttcgg tctctattgg 600 acgcttgcac ggttgattac tttgttcctc tggactttca gcatagaagc cttatgctta 660 attttgctcg gttgtataac cagcttgatc tacaagggcg cgctaagtct ttcagagcac 720 ttaccggttt tcctgtttat gtcccctctg aagattattt ggagggcagc tttctccaaa 780 aggaattaca agaatgagag ggctgtggaa ggatacaaag ggttttcggt cccacagaaa 840 ccgccaaagt ctgccgtaat tgaactacaa catgaaaacg gcagccatct cgggtacgcg 900 aactgcattc gcttgtatag tggagagaac gccttggtga cagctgaaca ctgtctagaa 960 ggcgctttcg caacgtcgtt gaaaactgga aacaggattc cgatgtcgac tttctttccc 1020 attttcaaaa gtacccgtaa tgatatctcc atactagtgg gtccacccaa ctgggaaggt 1080 ctactatcag tcaaaggagc tcatttcatt acagctgaca aaatcggcaa aggtcctgcc 1140 tctttctata ctcttgagaa aggggagtgg atgtgccata gtgccaccat agatggagcc 1200 catcaccagt tcgtgtctgt tttatgcaac actggacccg gatattccgg aacagggttt 1260 tggtcttcaa agaatctgct tggtgtgctt aaaggcttcc cactggaaga ggagtgtaac 1320 tacaacgtta tgtctgttat accctcgatc ccaggaatca cttccccaaa ttatgtgttt 1380 gagtcgaccg ccgtaaaagg ccgcgtcttc tcggatgaag ttgtgaaaga gctggagcgg 1440 gaagcatccg aagccgttaa gaagcttgcc agatttaaat cacttaccgg caagaactgg 1500 gctgatgatt atgactccga tgaggattac ggcctggaga gagaggctgc tacaaatgcg 1560 cccgcagaga aaactgctca aacaaactca gcagagaaga ctgctccatc aacttcagca 1620 gagagaactg cttcaacaaa caagccttta aatgggcaag cggcaccgtc cgccacaaca 1680 aacggcaact ccgacatccc cgacgtcgct acaagcgcac caccaatgga caaaatggtc 1740 gaacagatca tcacagctat ggtggggaga atcaatctct cggagataga ggagaagata 1800 gtgagcaggg tgtctcagaa agccctgcag aagcccaaac aaaagaagcg cggaaggcgt 1860 ggagggaaga acaagcacaa cagttcacct cctacttcaa cgcaatctac aagtggggcg 1920 cccaagaagg aggctgcccc ccaggcttca ggaagtgcgg acacatcccg cgctactacc 1980 acccccgcac caaaggcgaa acccagtggg ggcaaaaact ctgccaagtt catcccgagc 2040 tggcggagaa aacagcagga ttcggctggc caaaagccgg atctgaagct gaactccaaa 2100 gcctgaatct acaggctgcc aggtggctcc aacgtgcgga gtcagccact atccctggcg 2160 cagaagcaag aaagcgcgtg attgagaaaa cagtggaggc atacagaaat tgtgtaacta 2220 acgccccact atgctccctt aaatccaaac tggattgggc tggctttcaa caagatatcc 2280 gtgaagcagt ccagtccctt gagctagacg ctggtgtagg cattccctat atagcgtacg 2340 gcctccccac acaccgaggg tgggttgagg accataagct tctcccagtg ctcactcagc 2400 tgacctttga ccgactacag aagatgtcag aggccagctt tgaggatatg agcgcagaag 2460 agctggttca agaggggctc tgtgatccta tcagactatt tgtcaaagga gagccccata 2520 aacagagcaa actcgatgaa ggccgctacc gcctcatcat gtctgtttcc ttggtggatc 2580 aactggtagc ccgggttctg ttccaaaatc agaacaaaag ggaaatttcc ctgtggaggt 2640 ctgtgccttc caaacccggt tttggccttt caactgacac tcaaactgct gaattcttgg 2700 agtgtcttca aaaggtgtct ggagcgccat ctgtggaaga attgtgtgtg aatcacaagg 2760 agtacatgcg cccaaccgac tgttccggtt tcgattggtc agtcgcgtat tggatgctgg 2820 aggatgatat ggaggtgaga aatcgcctaa catttaataa cacccagctc accaagcgcc 2880 ttcgggccgc ctggttgaag tgcataggaa actccgtcct gtgcctgtcc gatggcactt 2940 tacttgccca aactgttccc ggagtacaaa agagcggaag ttacaacaca agttcctcca 3000 actctagaat ccgggttatg gctgcctatc actgtggcgc caactgggca atggccatgg 3060 gggacgatgc tcttgaagcc cccaactccg acctggagga gtataaaaca ctaggtttca 3120 aagtcgaggt aggtcgagaa ctcgaattct gttcacacat cttcagaaat ccgaccctcg 3180 ccgttccggt caacaccaac aaaatgcttt acaagttgat ccatggttac aatccggaat 3240 gtggcaatcc agaagtgatt caaaattatc tggctgcagt attctctgtg ctgcaggaac 3300 tccgacacga tcgtgagctc gttgccaagc tccaccagtg gttggttccg agtgccacca 3360 caaaagaaca ctgaaggagc tcactaaaac tagccaagca tacgcgagtt gcaagcattg 3420 gaagttcaag cctcgttaca gcaaccggac aaaatagatt ataaatttct agcgggattt 3480 gctttaggat tctcatccgc aatcccattt tcagtagccg gtttatattt agtttaccta 3540 aagatttcct cccacgtgcg atcaattgtt aatgagtacg gtcgtggtta aaggaaatgt 3600 caatggtggt gtacaacaac caaggaggcg aagaaggcaa tcccttcgta ggcgctctaa 3660 cagagttcag ccagtggtta tggtcacggc ccctgggcaa cccaggcgtc gaagacgtag 3720 aagaggaggc aatcgccgct caagaagaac tggagttccc cgaggacgag gctcaagcga 3780 gacattcgtg tttacaaagg acaacctcat gggcaactcc caaggaagtt tcaccttcgg 3840 gccgagtcta tcagactgtc cggcattcaa ggatggaata ctcaaggcct accatgagta 3900 taagatcaca agcatcttac ttcagttcgt cagcgaggcc tcttccacct cctccggttc 3960 catcgcttat gagttggacc cccattgcaa agtatcatcc ctccagtcct acgtcaacaa 4020 gttccaaatt acgaagggcg gcgccaaaac ttatcaagcg cggatgataa acggggtaga 4080 atggcacgat tcttctgagg atcagtgccg gatactgtgg aagggaaatg gaaaatcttc 4140 agataccgca ggatccttca gagtcaccat cagggtggct ttgcaaaacc ccaaataggt 4200 agactccgga tcagagcctg gtccaagccc acaaccgaca cccactccaa ctccccagaa 4260 gcacgagcga tttattgctt acgttggcat acctatgcta accattcagg ccagggagag 4320 cgacgaccaa atcatattgg gttccttagg gagccaaagg atgaaatata tagaggacga 4380 gaaccagaac tatacaaata ttagttctga gtattactct caatcgagca tgcaagccgt 4440 ccctatgtat tacttcaatg tcccgaaagg gcaatggtca gtcgacatca gctgcgaagg 4500 gtatcaaccc actagcagca cctcggatcc aaaccggggt aggagtgacg ggatgatcgc 4560 gtattcaaac gcggattccg actattggaa tgttggtgaa gcggatggtg ttaaaatttc 4620 gaagctacgc aacgataaca cctaccgcca aggtcaccca gaacttgaaa ttaactcgtg 4680 tcattttcgc gagggccaac tccttgaacg ggacgctaca attagcttcc acgttgaagc 4740 gcctactgat gggcgattct ttcttgttgg ccccgctatc cagaaaaccg caaagtataa 4800 ctatactatc tcatacggtg actggacgga ccgagacatg gaactggggc tgatcaccgt 4860 ggtgcttgat gaacatttag aaggcactgg ttcggctaac agagtgcggc ggcccccacg 4920 ggagggccac acctatatgg cctcgccgcg cgaaccggaa ggaaaaccgg ttggaaataa 4980 accaagggat gaaaccccga tacaaacaca ggaaagacaa cctgaccaaa ctccgtctaa 5040 cgacgtatcc gatgctggtt cggtaaacac cggcggctca actgagtcgc tgcaattgga 5100 gttcggggta aactcagata gtacttacga tgctacagtc gatggtacag actggcccag 5160 aattcctcca ccaaggcacc cacctgaacc tagagtttcc ggcaattcaa gaactgttaa 5220 tgacttttct ccgaaagccg atctactgga gaattgggat gccgaacact tcgaccctgg 5280 ttattccaaa gaagatgtcg ctgctgctac tattatagcg cacggcagta ttcaagatgg 5340 gcgaagtata ttggagaaga gagaggaaaa tgtcaagaac aaaacctcct cctggaagct 5400 cccgttacct aaagcggtga gcccagccat agccacattg cgctcgattc gcaaatccca 5460 acccctcgag ggagggaccc ttaagaaaga cgctactgat ggtgtctcat ctattggcag 5520 tggttctcta acaggtggca cgcttaagag gaaggtaact attgaagagc gtttactgca 5580 gaccttaaca actgaacaaa ggttgtggta cgagaatttg aagaaaacta accctctagc 5640 tgctacccaa tggctgtatg aatatcagcc acctccccaa gtagatagaa acatagctga 5700 aaagccattc caagggagga aatgagtcga ctcacgactt aaaactgagt gtccgccgga 5760 cattaagcgg aacgaaagcc gaaaggtgat taggctctca acgcctgcta gagaccgtcg 5820 aaagacgcga ctgtgtagcc aggatcctct tacagggttg tgtag 5865 //