ID AF453390; SV 1; linear; genomic RNA; STD; VRL; 5838 BP. XX AC AF453390; XX DT 14-FEB-2002 (Rel. 70, Created) DT 08-DEC-2006 (Rel. 90, Last updated, Version 5) XX DE Potato leafroll virus strain Noir, complete genome. XX KW . XX OS Potato leafroll virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5838 RX PUBMED; 12075102. RA Guyader S., Ducray D.G.; RT "Sequence analysis of Potato leafroll virus isolates reveals genetic RT stability, major evolutionary events and differential selection pressure RT between overlapping reading frame products"; RL J. Gen. Virol. 83(Pt 7):1799-1807(2002). XX RN [2] RP 1-5838 RA Guyader S., Giblot Ducray D.; RT ; RL Submitted (28-NOV-2001) to the INSDC. RL UMR BiO3P, Institut National de la Recherche Agronomique, Domaine de la RL Motte, BP 35327, Le Rheu Cedex 35653, France XX DR MD5; c10c3d50aa4fdd825d68cfee29794d23. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC5104775; 27544267. DR RFAM; RF01079; RF_site3. XX CC Genome sequence lacks part of non-coding region. XX FH Key Location/Qualifiers FH FT source 1..5838 FT /organism="Potato leafroll virus" FT /strain="Noir" FT /mol_type="genomic RNA" FT /country="France" FT /db_xref="taxon:12045" FT 5'UTR <1..53 FT CDS 54..797 FT /codon_start=1 FT /product="P0" FT /db_xref="GOA:Q8QYQ9" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:Q8QYQ9" FT /protein_id="AAL77929.1" FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLIYGYNH FT EQIYRICRSLLYVLPLLNCKGGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGSTI FT VIKLDDPTTAAAYRSELLRVSSSSYIQNAAGLSNGWGHDMEAFVRNAICLLELRERSIP FT QSGLRDLMGNYQHLVRSLLDACEVDHFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA FT LTGFPVYVPSEDYLEGSFLQKELQE" FT CDS 187..2079 FT /codon_start=1 FT /product="polyprotein" FT /note="P1; proteinase; VPG; contains a natural deletion FT compared to other potato leafroll viruses" FT /db_xref="GOA:Q8QYQ8" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q8QYQ8" FT /protein_id="AAL77930.1" FT /translation="MNRFTAYAALFFMFSLCSTAKEAGFQHPAFNFRGTSTMSALSGDY FT SAAPTPLYKSWALPSSLNLTTQPPPLLTDRSYYELVQALISKMRLDCQTVGDMTWRRLS FT EMLFASWNSVKEVSLKAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNEKAVEGYKGFSVPQKPPKS FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK FT SARNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE FT STAVKGRVFSDEAVKELEREASEAVKKLARFKSLTGKNWADDYDSDEDYGLEREAATNA FT PAEKTAQTNSAEKTAPTNKPLNGQAAPSAKTNGNFDIPDAATSAPPMDKMVEQIITAMV FT GRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKNKLNSSPPTSTQSTSGAPKKEAAP FT QASGSVGTSRATTTPAPEAKPSGGTNSAKFIPSWRRKQQDSAGQKPDLKLNSKA" FT CDS <1524..3347 FT /codon_start=1 FT /product="putative RNA polymerase" FT /note="P2; translated by ribosomal frameshift" FT /db_xref="GOA:Q8QYQ7" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q8QYQ7" FT /protein_id="AAL77931.1" FT /translation="GLRFGERGCNKCARRENCSNKLSRENCSNKQAFKWASGTVRQNKR FT QLRHPRRRYKRTTNGQNGRTDHHSYGGENQSLGDRGEDSEQGVSESPAEAQTKEARKAW FT REEQAKQFTSYFDAIYKWGAQEGGCPPGFRKCGHIPRYYHPRTRGETQWGHKLCQVHPE FT LAEKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEKTVEAYRNCV FT TNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWVEDHKLLPVL FT TQLTFDRLQGMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEGRYRLIMSVS FT LVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKVSGAPSVEELC FT ANHKEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWLKCIGNSVLC FT LSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDALEAPNSDLEE FT YKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNPEVIQNYLAA FT VFSVLQELRHDRELVAKLHQWLVPSATTKEH" FT CDS 3545..5698 FT /codon_start=1 FT /transl_except=(pos:4169..4171,aa:OTHER) FT /product="readthrough protein" FT /note="P5; translated by amber stop codon suppression" FT /db_xref="GOA:Q8QYQ6" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q8QYQ6" FT /protein_id="AAL77934.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPKXVDSGSEPGPSPQP FT TPTPTPQKHERFIAYVGIPMLTIQARENDDQITLGSLGNQRMKYIEDENQSYTNVSSEY FT YSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWN FT VGEADGVKISKLRNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTDGRFFLV FT GPAIQKTAKYNYTISYGDWMDRDMELGLITVVLDEHLEGTGSANRVRRPPREGHTYMAS FT PREPEGKPVGNKPRDETPIQTRERQLDQTPSDDVSDAGSVNNGGSAESLQLEFGVNSDS FT TYDATVDSTDWPRIPPPRHPPEPRVSGNSRTVTDFSPKADLLENWDAEHFDPGYSKEDV FT AAATIIAHGSIQDGRSMLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQPLEGG FT ILKKDATDGVSSIGSGSLTGGTLKRKVTIEERLLQTLTTEQRLWYENLKKTNPLAATQW FT LFEYQPPPQVDRSIAEKPFQGRK" FT CDS 3545..4171 FT /codon_start=1 FT /product="major capsid protein" FT /note="P3" FT /db_xref="GOA:Q84838" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q84838" FT /protein_id="AAL77932.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPK" FT CDS 3570..4040 FT /codon_start=1 FT /product="putative movement protein" FT /note="P4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q8QYQ5" FT /protein_id="AAL77933.1" FT /translation="MSMVVYNNQEGEEGNPFAGALTEFSQWLWSRPLGNPGAEDVEEEA FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS FT QASYFSSSARPLPPPPAPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKLIKRG" FT CDS 5103..5291 FT /codon_start=1 FT /product="P6" FT /db_xref="UniProtKB/TrEMBL:Q8QYQ4" FT /protein_id="AAL77935.1" FT /translation="MLQSIVQTGPEFLHQGTHLNLEFPAIQELLLTFLRKPIYWRIGMP FT STSTLVIPKKMSLLLLL" FT CDS 5321..5698 FT /codon_start=1 FT /product="P7" FT /db_xref="GOA:Q8QYQ3" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q8QYQ3" FT /protein_id="AAL77936.1" FT /translation="MLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQPLEGGIL FT KKDATDGVSSIGSGSLTGGTLKRKVTIEERLLQTLTTEQRLWYENLKKTNPLAATQWLF FT EYQPPPQVDRSIAEKPFQGRK" FT 3'UTR 5699..>5838 XX SQ Sequence 5838 BP; 1617 A; 1473 C; 1426 G; 1322 T; 0 other; gaaattgcag ctttagcgca taaactctac actcattgca aacgttatag catatgattg 60 tattgaccca gtctggaacc ttgctttttg accaaagatt taaactctca aagtttctct 120 tcgttgtcat tgcaacaggc tttcctcttc tcctgcagca agcgagctta atttacggct 180 acaatcatga acagatttac cgcatatgcc gctctcttct ttatgttctc cctttgctca 240 actgcaaagg aggcaggatt tcaacatccg gccttcaact tccgaggcac ctccactatg 300 agtgccttga gtggggatta ctctgcggca cccaccccgc tatacaaatc gtgggctcta 360 ccatcgtcat taaacttgac gacccaacca ccgccgctgc ttacagatcg gagctactac 420 gagttagttc aagctcttat atccaaaatg cggctggatt gtcaaacggt tggggacatg 480 acatggaggc gtttgtcaga aatgctattt gcctcctgga actccgtgaa agaagtatcc 540 ctcaaagcgg cctccgtgac cttatgggca attatcagca tttggttcgg tctctattgg 600 acgcttgcga ggttgatcac tttgttcctc tggactttca gcatagaagc cttatgctta 660 attttgctcg gttgtataac cagcttgatc tacaagggcg cgctaagtct ttcagagcac 720 ttaccggttt tcctgtttat gtcccctctg aagattattt ggagggcagc tttctccaaa 780 aggaattaca agaatgagaa ggctgtggaa ggatacaaag ggttttcggt cccacagaaa 840 ccgccaaagt ctgccgtaat tgaactacaa cacgaaaacg gcagccatct cgggtacgcg 900 aactgcattc gcttgtacag tggagagaac gccttggtga cagctgaaca ctgtctagaa 960 ggcgctttcg caacgtcgtt gaaaactgga aacaggattc cgatgtcgac tttctttccc 1020 atcttcaaaa gtgcccgtaa tgatatctcc atactagtag gtccacccaa ctgggaaggt 1080 ctactatcag tcaaaggagc tcatttcatt acagctgaca aaatcggcaa aggtcctgcc 1140 tctttctaca ctcttgagaa aggagagtgg atgtgccata gtgccaccat agatggagcc 1200 catcaccagt tcgtgtctgt tttatgcaac actggacccg gatattccgg aacagggttt 1260 tggtcttcaa agaatctgct tggtgtgctt aaaggcttcc cactggaaga ggagtgtaac 1320 tacaatgtta tgtctgttat accctcgatc ccaggaatca cttccccaaa ttatgtgttt 1380 gagtcgaccg ccgtaaaagg ccgtgtcttc tcggatgaag ctgtgaaaga gctagagcgg 1440 gaagcatccg aagccgtcaa gaagcttgcc agatttaaat cacttaccgg caagaactgg 1500 gctgatgatt atgactccga tgaggattac ggtttggaga gagaggctgc aacaaatgcg 1560 cccgcagaga aaactgctca aacaaactca gcagagaaaa ctgctccaac aaacaagcct 1620 ttaaatgggc aagcggcacc gtccgccaaa acaaacggca acttcgacat ccccgacgcc 1680 gctacaagcg caccaccaat ggacaaaatg gtcgaacaga tcatcacagc tatggtgggg 1740 agaatcaatc tctcggagat agaggagaag atagtgagca gggtgtctca gaaagccctg 1800 cagaagccca aacaaaagaa gcgcggaagg cgtggaggga agaacaagct aaacagttca 1860 cctcctactt cgacgcaatc tacaagtggg gcgcccaaga aggaggctgc cccccaggct 1920 tcaggaagtg tgggcacatc ccgcgctact accacccccg caccagaggc gaaacccagt 1980 gggggcacaa actctgccaa gttcatcccg agctggcgga gaaaacagca ggattcggct 2040 ggccaaaagc cggatctgaa gctgaactcc aaagcctgaa tctacaggct gccaggtggc 2100 tccaacgcgc ggagtcggcc actatccctg gcgcagaagc aagaaagcgc gtgattgaga 2160 aaacagtgga ggcatacaga aattgtgtaa ctaacgcccc actgtgctcc cttaaatcca 2220 aactggattg ggctggcttt caacaagata tccgtgaagc agtccagtcc cttgagctag 2280 acgctggtgt aggcattccc tatatcgcgt atggcctccc cacacaccga ggatgggttg 2340 aggaccataa gcttctccca gtgctcactc agctgacctt tgaccgacta caggggatgt 2400 cagaggccag ctttgaggat atgagcgcag aagagctggt tcaagaaggg ctttgtgatc 2460 ctatcagact atttgtcaaa ggagagcctc acaaacagag caaactcgat gaaggccgct 2520 accgcctcat catgtctgtt tccttggtgg atcaactggt agcccgggtt ctgttccaaa 2580 atcagaacaa aagggaaatt tccctgtgga ggtctgtgcc ttccaaaccc ggttttggcc 2640 tttcaactga cactcaaact gctgaattct tggagtgtct tcaaaaagtg tctggagcgc 2700 catctgtgga agaattgtgt gcaaatcaca aggagtacac gcgcccaacc gactgttccg 2760 gtttcgactg gtcagtcgcg tattggatgc tggaggatga tatggaggtg agaaatcgcc 2820 tgacatttaa taacacccag ctcaccaagc gccttcgagc tgcctggttg aagtgcatag 2880 gaaactccgt cctgtgcctg tccgatggca ctttacttgc ccaaactgtt cccggtgtgc 2940 aaaagagtgg aagttacaat acaagttcct ccaactctag aatccgggtt atggctgcct 3000 atcactgtgg cgccgactgg gcaatggcca tgggggacga tgctctcgaa gcccccaact 3060 ccgacctgga ggagtataaa acactaggtt tcaaagtcga ggtaggtcga gaactcgaat 3120 tctgttcaca catcttcaga aatccgaccc tcgccgttcc ggtcaacacc aacaaaatgc 3180 tttacaagtt gatccatggt tataatccgg aatgtggcaa tccagaagtg attcaaaact 3240 atctggctgc agtattttct gtgctgcagg aactccgaca cgatcgtgag ctcgttgcca 3300 agctccacca gtggttggtt ccgagtgcca ccacaaaaga acactgaagg agctcactaa 3360 aactagccaa gcatacacga gttgcaagca ttggaagttc aagcctcgtt acatcaaccg 3420 gacaaaatag attataaatt cttagcggga tttgctttag gattctcatc cgcaatccca 3480 ttttcagtag ccggtttata tttagtttac ctaaggattt cctcccacgt gcgatcaatt 3540 gtcaatgagt acggtcgtgg ttaaaggaaa tgtcaatggt ggtgtacaac aaccaagaag 3600 gcgaagaagg caatcccttc gcaggcgcgc taacagagtt cagccagtgg ttatggtcac 3660 ggcccctggg caacccaggc gccgaagacg tagaagagga ggcaatcgcc gctcaagaag 3720 aactggagtt ccccgaggac gaggctcaag cgagacattc gtgtttacaa aggacaacct 3780 catgggcaac tcccaaggaa gtttcacctt cgggccgagt ctatcagact gtccggcatt 3840 caaggatgga atactcaagg cctaccatga gtataagatc acaagcatct tacttcagtt 3900 cgtcagcgag gcctcttcca cctcctccgg ctccatcgct tatgagttgg acccccattg 3960 caaagtatca tccctccagt cctacgtcaa caagttccaa attacgaagg gcggcgccaa 4020 aacttatcaa gcgcggatga taaacggggt agaatggcac gattcttctg aggatcagtg 4080 ccggatactg tggaagggaa atggaaaatc ttcagatacc gcaggatcct tcagagtcac 4140 catcagggtg gctttgcaaa accccaaata ggtagactcc ggatcagagc ctggtccaag 4200 cccacaacca acacccactc caactcccca gaagcacgag cgatttattg cttacgttgg 4260 catacctatg ctaaccattc aggccaggga gaacgacgac caaatcacat tgggttcctt 4320 agggaaccaa aggatgaaat atatagagga cgagaaccag agctatacaa atgttagttc 4380 tgagtattac tctcaatcga gcatgcaagc cgtccctatg tattacttta atgtcccgaa 4440 agggcaatgg tcagtcgaca ttagctgcga agggtatcaa cccactagca gcacctcgga 4500 tccaaaccgg ggtaggagtg acgggatgat cgcgtattca aacgcggact ccgattattg 4560 gaatgttggt gaagcggatg gtgtcaaaat ttcgaagcta cgcaacgata acacctaccg 4620 ccaaggtcac ccagaacttg aaattaactc gtgtcatttt cgcgagggcc aactccttga 4680 acgggacgct acaattagct ttcacgttga agcgcctact gatgggcgat tctttctcgt 4740 tggtcccgcc atccagaaaa ccgcaaagta taactatact atctcatacg gtgattggat 4800 ggaccgagat atggaactgg ggctgatcac cgtggtgctt gatgaacatt tagaaggcac 4860 tggttcggct aacagagtgc ggcggccccc acgggagggc cacacctata tggcctcgcc 4920 gcgcgaaccg gaaggaaaac cggttggaaa taaaccaagg gacgaaaccc cgatacaaac 4980 gcgagaaaga caactcgatc aaactccgtc tgacgacgta tccgatgctg gttcggtaaa 5040 caacggcggc tcagctgagt cgctgcaatt ggagttcggg gtaaattcag atagtaccta 5100 cgatgctaca gtcgatagta cagactggcc cagaattcct ccaccaaggc acccacctga 5160 acctagagtt tccggcaatt caagaactgt tactgacttt tctccgaaag ccgatctatt 5220 ggagaattgg gatgccgagc acttcgaccc tggttattcc aaagaagatg tcgctgctgc 5280 tactattata gcgcacggca gtattcaaga tgggcgaagt atgttggaga agagagagga 5340 aaatgtcaag aacaaaacct cctcctggaa gcccccgtta cctaaagcgg tgagcccagc 5400 catagccaaa ttgcgctcaa ttcgcaaatc ccaacccctc gagggaggga tccttaagaa 5460 agacgccact gatggtgtct catctattgg cagtggttct ctaacaggtg gcacgcttaa 5520 gaggaaggtg actattgaag agcgtttact gcagacctta acaactgaac aaaggctgtg 5580 gtacgagaat ttgaagaaaa ctaaccctct agctgctacc caatggctgt ttgaatatca 5640 gccacctccc caagtagata gaagtatagc tgaaaagcca ttccaaggga ggaaatgagt 5700 cgactcacga cttaaaactg agtgtccgcc ggacattaag cggaacgaaa gccgaaaggt 5760 gattaggctc tcaacgcctg ctagagaccg tcgaaagacg cgactgtgta gccaagatcc 5820 tcttacaggg ttgtgtag 5838 //