ID AF453389; SV 1; linear; genomic RNA; STD; VRL; 5865 BP. XX AC AF453389; XX DT 14-FEB-2002 (Rel. 70, Created) DT 08-DEC-2006 (Rel. 90, Last updated, Version 5) XX DE Potato leafroll virus strain OP, complete genome. XX KW . XX OS Potato leafroll virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5865 RX PUBMED; 12075102. RA Guyader S., Ducray D.G.; RT "Sequence analysis of Potato leafroll virus isolates reveals genetic RT stability, major evolutionary events and differential selection pressure RT between overlapping reading frame products"; RL J. Gen. Virol. 83(Pt 7):1799-1807(2002). XX RN [2] RP 1-5865 RA Guyader S., Giblot Ducray D.; RT ; RL Submitted (28-NOV-2001) to the INSDC. RL UMR BiO3P, Institut National de la Recherche Agronomique, Domaine de la RL Motte, BP 35327, Le Rheu Cedex 35653, France XX DR MD5; 09e693b97340a0a2a471f78cb1c944de. DR EuropePMC; PMC2753099; 19640978. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF01079; RF_site3. XX CC Genome sequence lacks part of non-coding region. XX FH Key Location/Qualifiers FH FT source 1..5865 FT /organism="Potato leafroll virus" FT /strain="OP" FT /mol_type="genomic RNA" FT /country="Spain" FT /db_xref="taxon:12045" FT 5'UTR <1..53 FT CDS 54..797 FT /codon_start=1 FT /product="P0" FT /db_xref="GOA:Q8QYR7" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:Q8QYR7" FT /protein_id="AAL77921.1" FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLIYGYNH FT EQIYRICRSFLYVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPTI FT VIKLDDPTTAAAYRSELLRVSSSSYIQNAAGLSNGWGHDMEAFVRNAICLLELRERSIP FT QSGLRDLMGNYQHLVRSLLDACEVDHFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA FT LTGFPVYVPSEDYLEGSFLQKELQE" FT CDS 187..2106 FT /codon_start=1 FT /product="polyprotein" FT /note="P1; proteinase; VPG" FT /db_xref="GOA:Q8QYR6" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q8QYR6" FT /protein_id="AAL77922.1" FT /translation="MNRFTAYAALFFMFSLCSTAKEAGFQHPAFNFRGTSTMSALSGDY FT SAAPTPLYKSWALPSSLNLTTQPPPPLTDRSYYELVQALISKMRLDCQTVGDMTWRHLS FT EMLFASWNSVKEVSLKAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK FT SARNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMPVIPSIPGITSPNYGFE FT STAVKGRVFSDEAVKELEREASEAVKKLAKFKSLTGKNWADDYDSDEDYGLEREAATNA FT PAEKTAQTNSAEKTAPSTSAEKTALTNKPLNGQAAPSAKTNGNSDIPDVATSAPPMDKM FT VEQIITAMVGRINLTEIEEKIVSRVSQRALLKPKQKKRGRRGGKNKLNSSPPTSTQSTS FT GAPRKEAASQASGSADTSRATTTPAPEAKPSGDKNSAKFIPSWRRKQQDSAGQKPDLKL FT NSKA" FT CDS <1524..3374 FT /codon_start=1 FT /product="putative RNA polymerase" FT /note="P2; translated by ribosomal frameshift" FT /db_xref="GOA:Q8QYR5" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q8QYR5" FT /protein_id="AAL77923.1" FT /translation="GLRSGERGCNKCARRENCSNKLSREDCSINFSRENCSNKQAFKWA FT SGTVRQNKRQLRHPRRRYKRTTNGQNGRTDHHSYGGENQPHGDRGEDSEQGVSESPAEA FT QTKEARKAWREEQAKQFTSYFNAIYKWGAQEGGCLPGFRKCGHIPRYYHPRTRGETQWG FT QKLCQVHPELAEKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK FT TVEAYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV FT EDHKLLPVLTQLTFDRLQKMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKVS FT GAPSVEELCANHKEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFDNTQLTKRLRAAWL FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDAL FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH" FT CDS 3572..5725 FT /codon_start=1 FT /transl_except=(pos:4196..4198,aa:OTHER) FT /product="readthrough protein" FT /note="P5; translated by amber stop codon suppression" FT /db_xref="GOA:Q8QYR3" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q8QYR3" FT /protein_id="AAL77926.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQSR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITRGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPKXVDSGSEPGPSPQP FT TPTPTPQKPKRFIAYVGIPMLTIQARENDDQIILGSLGSQRMEYIEDENQNYTNVSSEY FT YSQSSMQAVPMYYFNVPRGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWN FT VGEADGVKISKLRNDNTYRQGHPDLEINSCHFREGQLLERDATISFHVEAPTDGRFFLV FT GPAIQKTAKYNYTISYGDWTDRDMELGLITVVLDEHLEGTGSANRVRRPPREGHTYMAS FT PRKPEGKPVGNKPRDETPIQTQERQPDQTPSDDVSDAGSVNSGGSTESLRLEFGVNSDS FT TYDATVDSTDWPRIPPPRHPPEPRVSGNSRTVTDFSPKADLLENWDAEHFDPGYSKEDV FT AAATIIAHGSIQDGRSMLEKREGNVKNKTSSWKLPLPKAESPAIAKLRSIRKSQPLEGG FT TLKKDTTDGVSSIGSGSLTGGTLKRKATIEEHLLQTLTTEQRLWYENLKKTNPLAATQW FT LFKYQPPPQVDRNLAEKPFQGRK" FT CDS 3572..4198 FT /codon_start=1 FT /product="major capsid protein" FT /note="P3" FT /db_xref="GOA:Q8QYR4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q8QYR4" FT /protein_id="AAL77924.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQSR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITRGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPK" FT CDS 3597..4067 FT /codon_start=1 FT /product="putative movement protein" FT /note="P4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q8QYR2" FT /protein_id="AAL77925.1" FT /translation="MSMVVYNNQEGEEGNPFAGALTEFSQWLWSRPLGNPGAEDAEEEA FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS FT QASYFSSSARPLPPPPVPSLMSWTPIAKYHPSSPTSTSSKLRGAAPKLIKRG" FT CDS 5130..5318 FT /codon_start=1 FT /product="P6" FT /db_xref="UniProtKB/TrEMBL:Q8QYR1" FT /protein_id="AAL77927.1" FT /translation="MLQSIVQTGPEFLHQGTHLNLEFPAIQELLLTFLRKPIYWRIGMP FT NTSTLVIPKKMSLLLLL" FT CDS 5348..5725 FT /codon_start=1 FT /product="P7" FT /db_xref="GOA:Q8QYR0" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q8QYR0" FT /protein_id="AAL77928.1" FT /translation="MLEKREGNVKNKTSSWKLPLPKAESPAIAKLRSIRKSQPLEGGTL FT KKDTTDGVSSIGSGSLTGGTLKRKATIEEHLLQTLTTEQRLWYENLKKTNPLAATQWLF FT KYQPPPQVDRNLAEKPFQGRK" XX SQ Sequence 5865 BP; 1621 A; 1484 C; 1431 G; 1329 T; 0 other; gaaattgcag ctttagcgca taaactctac actcattgca aacgttatag catatgattg 60 tattgaccca gtctggaacc ttgctttttg accaaagatt taaactctca aagtttctct 120 tcgttgtcat tgcaacaggc tttcctcttc tcctgcagca agcgagctta atttacggct 180 acaatcatga acagatttac cgcatatgcc gctcttttct ttatgttctc cctttgctca 240 actgcaaaag aggcaggatt tcaacatccg gccttcaact tccgaggcac ctccactatg 300 agtgccttga gtggggatta ctctgcggca cccaccccgc tatacaaatc gtgggcccta 360 ccatcgtcat taaacttgac gacccaacca ccgccgccgc ttacagatcg gagctactac 420 gagttagttc aagctcttat atccaaaatg cggctggatt gtcaaacggt tggggacatg 480 acatggaggc atttgtcaga aatgctattt gcctcctgga actccgtgaa agaagtatcc 540 ctcaaagcgg cctccgtgac cttatgggca attatcagca tttggttcgg tctttattgg 600 acgcttgcga ggttgatcac tttgttcctc tggactttca gcatagaagc cttatgctta 660 attttgctcg gttgtataac cagcttgatc tacaagggcg cgctaagtct ttcagagcac 720 ttaccggttt tcctgtttat gtcccctctg aagattattt ggagggcagc tttctccaaa 780 aggaattaca agaatgagag ggctgtggaa ggatataaag ggttttcggt cccacagaaa 840 ccgccaaagt ctgccgtaat tgaactacaa catgaaaacg gcagccatct cgggtacgcg 900 aactgtattc gcttgtacag tggagagaac gccttggtga cagctgaaca ctgtctagaa 960 ggcgctttcg caacgtcgtt gaaaactgga aacaggattc cgatgtcgac tttctttccc 1020 attttcaaaa gtgcccgtaa tgatatctcc atactagtag gtccacctaa ctgggaaggt 1080 ctactatcag ttaaaggagc tcatttcatt acagctgaca aaatcggcaa aggtcctgcc 1140 tctttctaca ctcttgagaa aggggagtgg atgtgccata gtgccaccat agatggagcc 1200 catcaccagt tcgtgtctgt tttatgcaac actggacccg gatattccgg aacagggttt 1260 tggtcttcaa agaatctgct tggtgtgctt aaaggcttcc cactggaaga ggagtgtaac 1320 tacaatgtta tgcctgttat accctcgatc ccaggaatca cttccccaaa ttatgggttt 1380 gagtcgaccg ccgtaaaagg ccgcgtcttc tcggatgaag ctgtgaaaga gctagagcgg 1440 gaagcatccg aagccgtcaa gaagcttgcc aaatttaaat cacttaccgg caagaactgg 1500 gctgatgatt atgactccga tgaggattac ggtctggaga gagaggctgc aacaaatgcg 1560 cccgcagaga aaactgctca aacaaactca gcagagaaga ctgctccatc aacttcagca 1620 gagaaaactg ctctaacaaa caagccttta aatgggcaag cggcaccgtc cgccaaaaca 1680 aacggcaact ccgacatccc cgacgtcgct acaagcgcac caccaatgga caaaatggtc 1740 gaacagatca tcacagctat ggtggggaga atcaacctca cggagataga ggagaagata 1800 gtgagcaggg tgtctcagag agccctgctg aagcccaaac aaaagaagcg cggaaggcgt 1860 ggagggaaga acaagctaaa cagttcacct cctacttcaa cgcaatctac aagtggggcg 1920 cccaggaagg aggctgcctc ccaggcttca ggaagtgcgg acacatcccg cgctactacc 1980 acccccgcac cagaggcgaa acccagtggg gacaaaaact ctgccaagtt catcccgagc 2040 tggcggagaa aacagcagga ttcggctggc caaaagccgg atctgaagct gaactccaaa 2100 gcctgaatct acaggctgcc aggtggctcc aacgcgcgga gtcggccact atccctggcg 2160 cagaagcaag aaagcgcgtg attgagaaaa cagtggaggc atacagaaat tgcgtaacta 2220 acgccccgct gtgctccctt aaatccaaac tggattgggc tggctttcaa caagatatcc 2280 gtgaagcagt ccagtccctt gagctagacg ctggtgtagg cattccctat atcgcgtatg 2340 gcctccccac acaccgagga tgggttgagg accataagct tctcccagtg ctcactcagc 2400 tgacctttga ccgcctacag aagatgtcag aggccagctt tgaggatatg agcgcagaag 2460 agctggttca agaagggctc tgtgatccta tcagactatt tgtcaaagga gagccccaca 2520 aacagagcaa actcgatgaa ggccgctacc gcctcattat gtctgtttcc ttggtggatc 2580 aactggtagc ccgggttctg ttccaaaatc agaacaaaag ggaaatttcc ctgtggaggt 2640 ctgtgccttc caaacccggt tttggccttt caactgacac tcaaactgct gaattcttgg 2700 agtgtcttca aaaggtgtct ggagcgccat ctgtggaaga attgtgtgca aatcacaagg 2760 agtacacgcg cccaaccgac tgttccggtt tcgactggtc agtcgcgtat tggatgctgg 2820 aggatgatat ggaggtgaga aatcgcctga catttgataa cacccagctc accaagcgcc 2880 ttcgggctgc ctggttgaag tgcataggaa actctgtcct gtgcctgtcc gatggcactt 2940 tacttgccca aactgttccc ggtgtgcaaa agagcggaag ttacaataca agttcttcca 3000 actctagaat ccgggttatg gctgcctatc actgtggcgc cgactgggca atggccatgg 3060 gggacgatgc tctcgaagcc cccaactccg acctagagga gtataaaaca ctaggtttca 3120 aagtcgaggt aggtcgagaa ctcgaattct gttcacatat tttcagaaat ccgaccctcg 3180 ccgttccggt caacaccaac aaaatgcttt acaagttgat ccatggttat aatccggaat 3240 gtggcaatcc agaagtgatt caaaactatc tggctgcagt attctctgtg ctgcaggaac 3300 tccgacacga tcgtgagctc gttgccaagc tccaccagtg gttggttccg agtgccacca 3360 caaaagaaca ctgaaggagc tcactataac tagccaagca tacgcgagtt gcaagcattg 3420 gaagttcaag cctcgttaca tcaaccggat aaaattgatt ataaattttt agcgggattt 3480 gctttaggat tcttatccgc gatcccattc tcagtagccg gtttatattt tgtttaccta 3540 aagatttcct cccacgtgcg atcaattgtt aatgagtacg gtcgtggtta aaggaaatgt 3600 caatggtggt gtacaacaac caagaaggcg aagaaggcaa tcccttcgca ggcgcgctaa 3660 cagagttcag ccagtggtta tggtcacggc ccctgggcaa tccaggcgcc gaagacgcag 3720 aagaggaggc aatcgccgct caagaagaac tggagttccc cgaggacgag gctcaagcga 3780 gacattcgtg tttacaaagg acaacctcat gggcaactcc caaggaagtt tcaccttcgg 3840 gccgagtcta tcagactgtc cggcattcaa ggatggaata ctcaaggcct accatgagta 3900 taagatcaca agcatcttac ttcagttcgt cagcgaggcc tcttccacct cctccggttc 3960 catcgcttat gagttggacc cccattgcaa agtatcatcc ctccagtcct acgtcaacaa 4020 gttccaaatt acgaggggcg gcgccaaaac ttatcaagcg cggatgataa acggggtaga 4080 atggcacgac tcttctgagg atcagtgccg gatactgtgg aagggaaatg gaaaatcttc 4140 agataccgca ggatccttca gagtcaccat cagggtggct ttgcaaaacc ccaaataggt 4200 agactccgga tcagagcctg gtccgagccc acaaccaaca cccactccaa ctccccagaa 4260 gcccaagcgt tttattgctt acgttggtat acctatgcta accattcagg ccagggagaa 4320 cgacgaccaa atcatattgg gttccttagg gagccaaagg atggaatata tagaggacga 4380 gaaccagaac tatacaaatg ttagttctga gtattactct caatcgagca tgcaagccgt 4440 ccctatgtat tacttcaatg tcccgagagg acaatggtca gtcgacatca gctgcgaagg 4500 gtatcaaccc actagcagca cctcggatcc aaaccggggt aggagtgacg ggatgatcgc 4560 gtattcaaac gcggattccg attattggaa tgttggtgaa gcggatggtg tcaaaatttc 4620 gaagctacgc aacgataaca cctaccgcca aggtcaccca gatctcgaaa ttaactcgtg 4680 tcattttcgc gagggccaac tccttgaacg ggacgctaca attagctttc acgttgaagc 4740 gcctactgat gggcgattct ttctcgttgg tcccgctatc cagaaaaccg caaagtataa 4800 ctatactatc tcatacggtg actggacgga ccgagacatg gaactggggc tgatcaccgt 4860 ggtgcttgat gaacatttag aaggcactgg ttcggctaac agagtgcggc ggcccccacg 4920 ggagggccac acctatatgg cctcgccgcg caaaccggaa ggaaaaccgg ttggaaataa 4980 accaagggac gaaaccccga tacaaacgca ggaaagacaa cctgatcaaa ctccgtctga 5040 cgacgtatcc gatgctggtt cggtaaacag cggcggttca actgagtcgc tgcgattgga 5100 gttcggggta aactcagata gtacctacga tgctacagtc gatagtacag actggcccag 5160 aattcctcca ccaaggcacc cacctgaacc tagagtttcc ggcaattcaa gaactgttac 5220 tgacttttct ccgaaagccg atctattgga gaattgggat gccgaacact tcgaccctgg 5280 ttattccaaa gaagatgtcg ctgctgctac tattatagcg cacggcagta ttcaagatgg 5340 gcgaagtatg ttggagaaga gagagggaaa tgtcaagaac aaaacctcct cctggaagct 5400 cccgttacct aaagcggaga gcccagccat agccaaattg cgctcgattc gcaaatccca 5460 acccctcgag ggagggaccc ttaagaaaga caccactgat ggtgtctcat ctattggcag 5520 tggttctcta acaggtggca cgcttaagag gaaggcaact atcgaagagc atttactgca 5580 gaccttaaca actgaacaaa ggctgtggta cgagaatttg aagaaaacta accctctagc 5640 tgctacccaa tggctgttta aataccagcc acctccccaa gtagatagaa acctagctga 5700 aaagccattc caagggagga aatgagtcga ctcacgactt aaaactgagt gtccgccgga 5760 catcaagcgg aacgaaagcc gaaaggtgat taggctctca acgcctgcta gagaccgtcg 5820 aaagacgcga ctgtgtagcc aggatcctct tacagggttg tgtag 5865 //