ID AF453388; SV 1; linear; genomic RNA; STD; VRL; 5865 BP. XX AC AF453388; XX DT 14-FEB-2002 (Rel. 70, Created) DT 08-DEC-2006 (Rel. 90, Last updated, Version 5) XX DE Potato leafroll virus strain Zim13, complete genome. XX KW . XX OS Potato leafroll virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5865 RX PUBMED; 12075102. RA Guyader S., Ducray D.G.; RT "Sequence analysis of Potato leafroll virus isolates reveals genetic RT stability, major evolutionary events and differential selection pressure RT between overlapping reading frame products"; RL J. Gen. Virol. 83(Pt 7):1799-1807(2002). XX RN [2] RP 1-5865 RA Guyader S., Giblot Ducray D.; RT ; RL Submitted (28-NOV-2001) to the INSDC. RL UMR BiO3P, Institut National de la Recherche Agronomique, Domaine de la RL Motte, BP 35327, Le Rheu Cedex 35653, France XX DR MD5; 8368b949be57381f754c03c21f70d4fd. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC5104775; 27544267. DR RFAM; RF01079; RF_site3. XX CC Genome sequence lacks part of non-coding region. XX FH Key Location/Qualifiers FH FT source 1..5865 FT /organism="Potato leafroll virus" FT /strain="Zim13" FT /mol_type="genomic RNA" FT /country="Zimbabwe" FT /db_xref="taxon:12045" FT 5'UTR <1..53 FT CDS 54..797 FT /codon_start=1 FT /product="P0" FT /db_xref="GOA:Q8QHN2" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:Q8QHN2" FT /protein_id="AAL77913.1" FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLIYGYNH FT EQIYRICRSFLYVLPLLNRKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPTI FT VIKLDDPTTAAAYRSELLRVSSSSYIQNAAGLSNGWGHDMEAFVRNAICLLELRERSIP FT QSGLRDLMGNYQHLVRSLLDACKVDHFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA FT LTGFPVYVPSEDYLEGSFLQKELQE" FT CDS 187..2106 FT /codon_start=1 FT /product="polyprotein" FT /note="P1; proteinase; VPG" FT /db_xref="GOA:Q8QYS1" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q8QYS1" FT /protein_id="AAL77914.1" FT /translation="MNRFTAYAALFFMFSLCSTAKEAGFQHPAFNFRGTSTMSALSGDY FT SAAPTPLYKSWALPSSSNLTTQPLPPLTDRSYYELVQALISKMRLDCLTVGDMTWRHLS FT EMLFASWNSVREVSLKAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLGC FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK FT STRNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE FT STAVKGRVFSDEAVKELEREAKEAVMKLARFKSLAGKNWADDYDSDEDYGLEREAATNA FT PAEKTAQTNSAEKTAPSTSAEKTALTNKPLNGQAAPSAKTNGNSDIPDAATSAPPMDKM FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKNKHNSSPPTSTQSTS FT GAPKKEAASQASGSVGTSRATTTPAPEAKPSGGTNSAKFIPSWRRKQQDSAGQKPDLKL FT NSKA" FT CDS <1524..3374 FT /codon_start=1 FT /product="putative RNA polymerase" FT /note="P2; translated by ribosomal frameshift" FT /db_xref="GOA:Q8QYS0" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q8QYS0" FT /protein_id="AAL77915.1" FT /translation="GLRSGERGCNKCARRENCSNKLSREDCSINFSRENCSNKQAFKWA FT SGPVRQNKRQLRHPRRRYKRTTNGQNGRADHHSYGGENQSLGDRGEDSEQGVSESSAEA FT QTKEARKAWREEQAQQFTSYFNAIYKWGAQEGGCLPGFRKCGHIPRYYHPRTRGETQWG FT HKLCQVHPELAEKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK FT TVEEYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV FT EDHKLLPVLTQLTFDRLQKMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKMS FT GAPSVEKLCANHEEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDAL FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH" FT CDS 3572..5725 FT /codon_start=1 FT /transl_except=(pos:4196..4198,aa:OTHER) FT /product="readthrough protein" FT /note="P5; translated by amber stop codon suppression" FT /db_xref="GOA:Q8QYR8" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q8QYR8" FT /protein_id="AAL77918.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRVNRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPKXVDSGSEPGPSPQP FT TPTPTPQKHERFIAYVGIPMLTIQARENDDQIILGSLGSQRMKYIEDENQNYTNVSSEY FT YSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWN FT VGEADGVKISKLCNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTDGRFFLV FT GPAIQKTAKYNYTISYGDWTDRDMELGLITVVLDEHLEGTGSAYRVRRPPREGHTYMAS FT PREPEGKPVGNKPRDETPIQTQERQPDQTPSDDVSDAGSVNSGGSTESLQLEFGPNSDS FT TYDATVDGTDWPRIPPPRHPPKPRVSGDSRTVTDFSPKADLLENWDAEHFDPGYSKEDV FT AAATIIAHGSIQDGRSMLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQPLEGG FT TLKKDATDGVSSIGSGSLTGGTLKRKVTIEERLLQTLTTEQRLWYENLKKTNPPAAIQW FT LHEYQPPPQVDRNIAEKPFQGRK" FT CDS 3572..4198 FT /codon_start=1 FT /product="major capsid protein" FT /note="P3" FT /db_xref="GOA:Q8QYR9" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q8QYR9" FT /protein_id="AAL77916.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRVNRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPK" FT CDS 3597..4067 FT /codon_start=1 FT /product="putative movement protein" FT /note="P4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q77E88" FT /protein_id="AAL77917.1" FT /translation="MSMVVYNNQEGEEGNPFAGALTEFSQWLWSRPLGNPGAEDAEEEA FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS FT QASYFSSSARPLPPPPVPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKLIKRG" FT CDS 5130..5318 FT /codon_start=1 FT /product="P6" FT /db_xref="UniProtKB/TrEMBL:Q8QHQ0" FT /protein_id="AAL77919.1" FT /translation="MLQSMVQTGPEFLHQGTHLNLEFPAIQELLLTFLRKPIYWRIGML FT NTSTLVIPKKMSLLQLL" FT CDS 5348..5725 FT /codon_start=1 FT /product="P7" FT /db_xref="GOA:Q8QHP7" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q8QHP7" FT /protein_id="AAL77920.1" FT /translation="MLEKREENVKNKTSSWKPPLPKAVSPAIAKLRSIRKSQPLEGGTL FT KKDATDGVSSIGSGSLTGGTLKRKVTIEERLLQTLTTEQRLWYENLKKTNPPAAIQWLH FT EYQPPPQVDRNIAEKPFQGRK" FT 3'UTR 5726..>5865 XX SQ Sequence 5865 BP; 1630 A; 1480 C; 1427 G; 1328 T; 0 other; gaaattgcag ctttagcgca taaactctac actcattgca aacgttatag catatgattg 60 tattgaccca gtctggaacc ttgctttttg accaaagatt taaactctca aagtttctct 120 tcgttgtcat tgcaacaggt tttcctcttc tcctacagca agcgagctta atttacggct 180 acaatcatga acagatttac cgcatatgcc gctcttttct ttatgttctc cctttgctca 240 accgcaaaag aggcaggatt tcaacatccg gccttcaact tccgaggcac ctccactatg 300 agtgccttga gtggggatta ctctgcggca cccaccccgc tatacaaatc gtgggcccta 360 ccatcgtcat caaacttgac gacccaacca ctgccgccgc ttacagatcg gagctactac 420 gagttagttc aagctcttat atccaaaatg cggctggatt gtctaacggt tggggacatg 480 acatggaggc atttgtcaga aatgctattt gcctcctgga actccgtgag agaagtatcc 540 ctcaaagcgg cctccgtgac cttatgggca attatcagca tttggttcgg tctttattgg 600 acgcttgcaa ggttgatcac tttgttcctc tggactttca gcatagaagc cttatgctta 660 attttgctcg gttgtataac cagcttgatc tacaagggcg cgctaagtct ttcagagcac 720 ttaccggttt tcctgtttat gtcccctctg aagattattt ggagggcagc tttctccaaa 780 aggaattaca agaatgagag ggctgtggaa ggatacaaag ggttttcggt cccacagaaa 840 ccgccaaagt ctgccgtaat tgaactacaa catgaaaacg gcagccatct cgggtacgcg 900 aactgcattc gcttgtacag tggagagaac gccttggtga cagctgaaca ctgtctagaa 960 ggcgctttcg caacgtcgtt gaaaactgga aacaggattc cgatgtcgac tttctttccc 1020 attttcaaaa gtacccgtaa tgatatctcc atactagtag gtccacccaa ctgggaaggt 1080 ctactatcag tcaaaggagc tcatttcatt acagctgaca aaatcggcaa aggtcctgcc 1140 tctttctata ctcttgagaa aggggagtgg atgtgccata gtgccaccat agatggagct 1200 catcaccagt tcgtgtctgt tttatgcaac actggacccg gatattccgg aacagggttt 1260 tggtcttcaa agaatctgct tggtgtgctt aaaggcttcc cactggagga ggagtgtaac 1320 tacaatgtta tgtctgttat accctcgatc ccaggaatca cttccccaaa ttatgtgttt 1380 gagtcgaccg ccgtaaaagg ccgcgtcttc tcggatgaag ctgtgaaaga gctagagcgg 1440 gaagcaaaag aagccgttat gaagcttgcc agatttaaat cacttgccgg caagaactgg 1500 gctgatgatt atgactccga tgaggattac ggtctggaga gagaggctgc aacaaatgcg 1560 cccgcagaga aaactgctca aacaaactca gcagagaaga ctgctccatc aacttcagca 1620 gagaaaactg ctctaacaaa caagccttta aatgggcaag cggccccgtc cgccaaaaca 1680 aacggcaact ccgacatccc cgacgccgct acaagcgcac caccaatgga caaaatggtc 1740 gagcagatca tcacagctat ggtggggaga atcaatctct cggagataga ggagaagata 1800 gtgagcaggg tgtctcagaa agctctgcag aagcccaaac aaaagaagcg cggaaggcgt 1860 ggagggaaga acaagcacaa cagttcacct cctacttcaa cgcaatctac aagtggggcg 1920 cccaagaagg aggctgcctc ccaggcttca ggaagtgtgg gcacatcccg cgctactacc 1980 acccccgcac cagaggcgaa acccagtggg ggcacaaact ctgccaagtt catcccgagc 2040 tggcggagaa aacagcagga ttcggctggc caaaagccgg atctgaagct gaactccaaa 2100 gcctgaatct acaggctgcc aggtggctcc aacgcgcgga gtcggccact atccctggcg 2160 cagaagcaag aaagcgcgtg atcgagaaaa cagtggagga atacagaaat tgtgtaacta 2220 acgccccact gtgctccctt aaatccaaac tggattgggc tggctttcaa caagatatcc 2280 gtgaagcagt ccagtccctt gagctagacg ctggtgtagg cattccctat atcgcgtatg 2340 gcctccccac acaccgagga tgggttgagg accataagct tctcccagtg ctcactcagc 2400 tgacctttga ccgtttacag aagatgtcag aggccagctt tgaggatatg agcgcagaag 2460 agctggttca agaagggctc tgtgacccta tcagactatt tgtcaaagga gagccccaca 2520 aacagagcaa actcgatgaa ggccgctacc gcctcatcat gtctgtttcc ttggtggatc 2580 aactggtagc ccgggttctg ttccaaaatc agaacaaaag ggaaatttcc ctatggaggt 2640 ctgtgccttc caaacccggt tttggccttt caactgacac tcaaactgct gaattcttgg 2700 agtgtcttca aaagatgtct ggagcgccat ctgtggaaaa attgtgtgca aatcacgagg 2760 agtacacgcg cccaaccgac tgttccggtt tcgactggtc agtcgcgtat tggatgctgg 2820 aggatgatat ggaggtgaga aatcgcctga catttaataa cacccagctc accaagcgcc 2880 ttcgggctgc ctggttgaag tgcataggaa actccgtcct gtgcctgtcc gatggcactt 2940 tacttgccca aactgttccc ggtgtgcaaa agagcggaag ttacaataca agttcctcca 3000 actctagaat ccgggttatg gctgcctatc actgtggcgc cgactgggca atggccatgg 3060 gggacgatgc tcttgaagcc cccaactccg acctagagga gtataaaaca ctaggtttca 3120 aagtcgaggt aggtcgagaa ctcgaattct gttcacacat cttcagaaat ccgaccctcg 3180 ccgttccggt caacaccaac aaaatgcttt acaagttgat ccatggttac aatccggaat 3240 gtggcaatcc agaagtgatt caaaactatc tggctgcagt attctctgtg ctgcaggaac 3300 tccgacacga tcgtgagctc gttgccaagc tccaccagtg gttggttccg agtgccacca 3360 caaaagaaca ctgaaggagc tcactaaaac tagccaagca tacacgagtt gcaagcattg 3420 gaagttcaag cctcgttaca tcaaccggat aaaatagatt ataaattctt agcgggattt 3480 gctttaggat tctcatccgc aatcccattt tcagtagccg gtttatattt agtttaccta 3540 aagatttcct cccacgtgag atcaattgtt aatgagtacg gtcgtggtta agggaaatgt 3600 caatggtggt gtacaacaac caagaaggcg aagaaggcaa tcccttcgca ggcgcgttaa 3660 cagagttcag ccagtggtta tggtcacggc ccctgggcaa cccaggcgcc gaagacgcag 3720 aagaggaggc aatcgccgct caagaagaac tggagttccc cgaggacgag gctcaagcga 3780 gacattcgtg tttacaaagg acaacctcat gggcaactcc caaggaagtt tcaccttcgg 3840 gccgagtcta tcagactgtc cggcattcaa ggatggaata ctcaaggcct accatgagta 3900 taagatcaca agcatcttac ttcagttcgt cagcgaggcc tcttccacct cctccggttc 3960 catcgcttat gagttggacc cccattgcaa agtatcatcc ctccagtcct acgtcaacaa 4020 gttccaaatt acgaagggcg gcgccaaaac ttatcaagcg cggatgataa acggggtaga 4080 atggcacgat tcttctgagg atcagtgccg gatactgtgg aagggaaatg gaaaatcttc 4140 agataccgca ggatccttca gagtcaccat cagggtggct ttgcaaaacc ccaaataggt 4200 agactccgga tcagagcctg gtccaagccc acaaccaaca cccactccaa ctccccagaa 4260 gcacgagcgt tttattgctt acgttggcat acctatgcta accattcaag ccagggagaa 4320 cgacgaccaa atcatattgg gttccttagg gagccaaagg atgaaatata tagaggacga 4380 gaaccagaac tatacaaatg ttagttctga gtattactct caatcgagca tgcaagccgt 4440 ccctatgtat tacttcaatg tcccgaaagg gcaatggtca gtcgacatca gctgcgaagg 4500 gtatcaaccc actagcagca cctcggatcc aaaccggggt aggagtgacg ggatgatcgc 4560 gtattcaaac gcggattccg attattggaa tgttggtgaa gcggatggtg tcaaaatttc 4620 gaaactatgc aacgataaca cctaccgcca aggtcaccca gaacttgaaa ttaactcgtg 4680 tcattttcgc gagggccaac tccttgaacg ggacgctaca attagcttcc acgttgaagc 4740 gcctactgat gggcgattct ttctcgttgg tcccgccatc cagaaaaccg caaagtataa 4800 ctatactatc tcatacggtg actggacgga ccgagatatg gaactggggc tgatcaccgt 4860 ggtgcttgat gaacatttag aaggcactgg ttcggcttac agagtgcggc ggcccccacg 4920 ggagggccac acctatatgg cctcgccgcg cgaaccggaa gggaaaccgg ttggaaataa 4980 accaagggac gaaaccccga tacaaacgca ggaaagacaa cctgatcaaa ctccgtctga 5040 tgacgtatcc gatgctggtt cggtaaacag cggcggctca actgagtcac tgcaattgga 5100 gttcgggcca aactcagata gtacctacga tgctacagtc gatggtacag actggcccag 5160 aattcctcca ccaaggcacc cacctaaacc tagagtttcc ggcgattcaa gaactgttac 5220 tgacttttct ccgaaagccg atctattgga gaattgggat gctgaacact tcgaccctgg 5280 ttattccaaa gaagatgtcg ctgctgcaac tattatagcg cacggcagta ttcaagatgg 5340 gcgaagtatg ttggagaaga gagaggaaaa tgtcaagaac aaaacctcct cctggaagcc 5400 cccgttacct aaagcggtga gcccagccat agctaaattg cgctcgattc gcaaatccca 5460 acccctcgag ggagggaccc ttaagaaaga cgccactgat ggtgtctcat ctattggcag 5520 tggttctcta acaggtggca cgcttaagag gaaggtaact attgaagagc gtttactgca 5580 gactttgaca actgaacaaa ggctgtggta cgagaatttg aagaaaacta accctccagc 5640 tgctatccaa tggctgcatg aatatcagcc acctccccaa gtggatagaa acatagctga 5700 aaagccattc caagggagga aatgagtcga ctcacgactt aaaactgagt gtccgccgga 5760 cattaagcgg aacgaaagcc gaaaggtgat taggctctca acgcctgcta gagaccgtcg 5820 aaagacgcga ctgtgtagcc aggatcctct tacagggttg tgtag 5865 //