ID AF452884; SV 3; linear; genomic RNA; STD; VRL; 3644 BP. XX AC AF452884; XX DT 04-DEC-2002 (Rel. 74, Created) DT 14-SEP-2006 (Rel. 89, Last updated, Version 6) XX DE Beet black scorch virus, complete genome. XX KW . XX OS Beet black scorch virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Betanecrovirus. XX RN [1] RP 1-3644 RX DOI; 10.1007/s00705-002-0896-1. RX PUBMED; 12491108. RA Cao Y., Cai Z., Ding Q., Li D., Han C., Yu J., Liu Y.; RT "The complete nucleotide sequence of Beet black scorch virus (BBSV), a new RT member of the genus Necrovirus"; RL Arch. Virol. 147(12):2431-2435(2002). XX RN [2] RP 1-3644 RX DOI; 10.1099/vir.0.81928-0. RX PUBMED; 16963767. RA Yuan X., Cao Y., Xi D., Guo L., Han C., Li D., Zhai Y., Yu J.; RT "Analysis of the subgenomic RNAs and the small open reading frames of Beet RT black scorch virus"; RL J. Gen. Virol. 87(Pt 10):3077-3086(2006). XX RN [3] RP 1-3644 RA Cao Y., Yu J., Cai Z.; RT ; RL Submitted (28-NOV-2001) to the INSDC. RL State Key Laboratory for Agrobiotechnology, China Agricultural University, RL 2 Yuanmingyuan West Road, Beijing, Beijing 100094, China XX RN [4] RC Sequence update by submitter RP 1-3644 RA Cao Y., Yu J., Cai Z.; RT ; RL Submitted (30-DEC-2002) to the INSDC. RL State Key Laboratory for Agrobiotechnology, China Agricultural University, RL 2 Yuanmingyuan West Road, Beijing, Beijing 100094, China XX RN [5] RC Sequence update by submitter RP 1-3644 RA Cao Y., Yu J., Cai Z.; RT ; RL Submitted (08-JUL-2004) to the INSDC. RL State Key Laboratory for Agrobiotechnology, China Agricultural University, RL 2 Yuanmingyuan West Road, Beijing, Beijing 100094, China XX DR MD5; cb60e4eed96d6be921ee176993898e89. XX CC On Jul 8, 2004 this sequence version replaced gi:27414406. XX FH Key Location/Qualifiers FH FT source 1..3644 FT /organism="Beet black scorch virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:196375" FT CDS 36..2210 FT /codon_start=1 FT /transl_except=(pos:645..647,aa:OTHER) FT /product="82K protein" FT /note="RNA polymerase; ORF2; produced by translational FT readthrough of ORF1" FT /db_xref="GOA:Q8B5S0" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q8B5S0" FT /protein_id="AAN76814.3" FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIINHNTTILWACACAYGFY FT RAFRLIFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCDEMEERRAVLGPSYGKXGGLLCTSGFTTPTWRGNP FT EGLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKDGLAPT FT PQPTPGVYAKLSRFHDLVSANLTSTTRLTYEQFLGFYSGRKLERYQQAVESLAIRPIGV FT QDAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEVGRFLRHAEEHLFDAINRVYGG FT RTVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHKIWLSMYRGA FT DRKTLSKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCASVHNYCSQ FT LGVKRFRLANNGDDCMLVVEAKDEARVRQGLIEYYRELGFTMKVEPTVYELEHLEFCQT FT RPVLVDGAYRMVRNLHQGMSKDLHSLHDLGSRKAAEAWVSAVGSGGRVMNDGVPVLKSF FT FMQFPLSSGPKTKSDMSVALQEDWKYKFNRTGCFKNLAPTPQSRYSFWRAFGVLPDEQI FT ALENGFSRLSFDKLDQDTQEEVSLLQFSGA" FT CDS 36..647 FT /codon_start=1 FT /product="22K protein" FT /note="RNA polymerase; ORF1" FT /db_xref="GOA:Q8B5R9" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q8B5R9" FT /protein_id="AAN76813.1" FT /translation="MDSIPYVILRILDFIFHSIFFPSLLFIINHNTTILWACACAYGFY FT RAFRLIFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPTHK FT DIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHIAHA FT VPLAVAACFIPLDSDFLAASIRNCDEMEERRAVLGPSYGK" FT CDS 2107..2244 FT /codon_start=1 FT /product="5K protein" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:Q8B5R8" FT /protein_id="AAN76815.3" FT /translation="MNRLPWRMGFLVSALISWTRTPRRRSASSSSLGHENLTTFHGTTA FT " FT CDS 2228..2419 FT /codon_start=1 FT /product="7K protein A" FT /note="ORF4" FT /db_xref="InterPro:IPR035284" FT /db_xref="UniProtKB/TrEMBL:Q8B5R7" FT /protein_id="AAN76816.2" FT /translation="MEQQRSEQRRERRVRSRSEDRKSMSDVGQSAVNREADVKKDMGPS FT VSMTVVGENVEFTQHFHF" FT CDS 2421..2618 FT /codon_start=1 FT /product="7K protein B" FT /note="ORF5" FT /db_xref="GOA:Q8B5R6" FT /db_xref="UniProtKB/TrEMBL:Q8B5R6" FT /protein_id="AAN76817.2" FT /translation="MSIIYVVQEKPSGFLVWALVVAIVCIIGLLSYTPPERLNHSYHEN FT NQKTQYITIGGASTSKVSTN" FT CDS 2647..3345 FT /codon_start=1 FT /product="coat protein" FT /note="virus shell; ORF6" FT /db_xref="GOA:Q8B5R5" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q8B5R5" FT /protein_id="AAN76818.2" FT /translation="MAPKRNKGGKKSRMSDETVRAPAAGGVIQRTPGIPPRIRSTTIGT FT RVTNTELLAGVNVAAAGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLAIKLIYIPIVPT FT TTAGAMTMALSYDPADATPTSFQQVQQMYNSITAPVWAGFDGATVQLLGERPTTGAVCI FT DVDVNRFGFTWYRYATLAAITALTANDRNLYIPSVCNVATSGGTAATNVGNLMIKYSIE FT LIEPIPAAIN" XX SQ Sequence 3644 BP; 895 A; 862 C; 946 G; 941 T; 0 other; aagaaaccta accagtttct cgttgatcag cgatcatgga ttcaatcccg tatgtgatcc 60 tgcgcatact cgattttatc ttccactcca tcttctttcc atctttactc tttatcatca 120 accacaacac caccatcctg tgggcatgtg cctgtgccta tgggttctac cgtgcattcc 180 gcctcatctt caagataaag gtggaagtac acccagccac ccgagccgtc ttcaaggata 240 tggtcactcg cttccagcgg gagagtatgt tctcacctga cgacgaagtg ccggagggca 300 tccctatcca cgaggatgtt gaccttgtta gcgaccccac acacaaagat attaagcggg 360 tccgtgctag caggcgagtc tcttatgccg tgagggttgc ccatgtagcc aagtctaagg 420 tgggattgct cgccaatacc aaggcgaatg agctggtgta ctcccgtctt tgccgagacg 480 agatggttac ccacggtgtg cgcccatcgc acattgcaca cgcagtgccg cttgctgtcg 540 cggcctgctt cataccgttg gacagtgatt tccttgcagc ttctattaga aactgcgatg 600 agatggagga gcggagggcc gtactagggc cctcatatgg aaaataggga ggcctactct 660 gcaccagcgg gtttaccacg cctacttggc gtggtaatcc agagggtttg ctggtgaaga 720 gaggaccacc tctggctaaa cctaggaaac tgtaccgttt ttctgggttt gggactcata 780 tacggtacgg agtgcacgat cactcattgg gcaatgttcg gaggggactt gttgagcggc 840 tattcatggt tgaaaccaag gatggcttag ctccaacacc acagcccacc cctggcgtgt 900 acgccaagtt atcccggttt catgaccttg ttagtgccaa cctaacctcg accaccagat 960 taacatacga gcaattcctc ggattttatt ctggtcgcaa attagagagg taccaacagg 1020 ccgtggagtc gttagcaatc cgcccaatag gggtacagga tgcttggctt agcacgtttg 1080 ttaaggctga aaaattaaac atctcagcca aacccgaccc ggcacctagg gttattcagc 1140 ctaggtcgcc gaggtacaat gtggaagttg gacggttcct cagacacgct gaggaacatc 1200 tgttcgacgc catcaaccgt gtgtatggtg ggcgaacggt attcaagggg ttgaatgccg 1260 atcaggctgg catggagatg caagctatgt ggcaagaatt cgacaatcct gtgggtattg 1320 gtatggatgc ctctcgtttc gaccaacacg tctctaagga ggcgttggag tttgaacaca 1380 aaatctggct atccatgtac cgtggggctg acaggaaaac attgtcgaag ctgttgggga 1440 tgcaaatcca caaccgcggt cttgccagat gccctgatgg agaaatcagg tacacggttg 1500 aggggtgtcg tatgtctggg gacatcaaca catcttctgg aaactgctat atcatgtgtg 1560 cttcggtgca caattattgc agccagttgg gtgtcaagag attcaggctt gccaacaatg 1620 gtgatgattg catgcttgtc gtcgaagcca aggatgaagc acgtgtcagg cagggactca 1680 tcgagtatta tagggaattg ggtttcacca tgaaagtgga acctacagtc tatgaactcg 1740 agcacttgga gttttgccag acacgtccag tccttgtcga tggggcatat cgaatggtgc 1800 gcaatcttca ccagggcatg tctaaggatc ttcactcctt gcacgatctt ggtagtagga 1860 aagctgctga agcttgggtt tcagcggttg gtagtggagg ccgcgtgatg aatgatggag 1920 taccagtgct caaatcattc ttcatgcagt ttcccctatc ttctggacct aaaaccaagt 1980 ctgacatgag tgtagcgttg caggaagatt ggaaatacaa attcaatcgg actgggtgtt 2040 tcaagaactt ggcacccact ccacaatccc gctactcatt ttggcgtgcg tttggagtgc 2100 taccagatga acagattgcc ctggagaatg ggttttctcg tctcagcttt gataagctgg 2160 accaggacac ccaggaggag gtcagcctcc tccagttctc tggggcatga aaacctaacc 2220 acttttcatg gaacaacagc gtagtgaaca acgtcgtgag cgtagagtga gaagtagatc 2280 ggaggacagg aagtctatgt ctgatgtagg gcaatctgct gtcaataggg aagcagatgt 2340 caagaaagat atgggtccat cggtttctat gacggtggtg ggggagaacg tagagtttac 2400 acaacatttc cacttctgaa atgagcatca tttatgtcgt acaggagaag ccctctgggt 2460 ttctcgtgtg ggcattggtt gttgcaattg tgtgcattat tggactctta tcgtacactc 2520 cacctgaaag acttaaccac tcttatcacg aaaacaatca gaagacgcaa tacataacta 2580 ttggaggagc atccactagt aaagtttcca cgaactgaat tttctgcttt ctagtatagt 2640 caataaatgg cacctaagcg caataaagga ggcaagaagt cccgcatgtc cgatgagaca 2700 gtgcgggctc ctgctgcagg gggcgttata caacgcacac ctggcattcc tccccgcatt 2760 aggtccacca ctattggtac gcgtgtcacc aacactgagc tgctcgctgg agtgaatgtc 2820 gctgcggcgg gagctttctc agttgttggc gctggtcttt tccccagcaa ccttggttgg 2880 ctcaatggga ttgcttccaa ttatagcaaa tttagatggc ttgctatcaa gctcatctac 2940 attcccattg ttcctaccac gaccgctggg gcaatgacca tggctttatc gtatgatcct 3000 gctgatgcta cgccaactag tttccaacaa gtgcaacaga tgtataacag catcacagca 3060 cctgtctggg ctggatttga tggagctact gttcagctgc taggggagag accaacaact 3120 ggggctgtgt gcattgatgt ggatgtaaat cggtttggat ttacatggta cagatatgct 3180 acgcttgctg ccattaccgc actcactgca aatgatagga atctttatat tcctagtgtt 3240 tgcaatgtgg ctacgtctgg tggtactgca gccaccaatg ttggcaatct gatgataaag 3300 tacagcattg agctcattga gccaatacct gctgccatta attagatccc acatcctggt 3360 gtggttaatc cagtgaaaaa tattaggaaa tccttgggat tcacacccca gggaggattg 3420 cttgcatagt gcaggtatgt tgagttacac tatgaggtat tggtgctgaa tcctggtaaa 3480 caggcttgac aggtttgggt ggttccagac cgatgtatta cccaagatac tcatggtact 3540 ctactagaaa acactatgcg tgcgcacacg gctggctatg tcctatcata gctgggggcc 3600 ccggagtgcg aaaccctctt atatacctgg tcttccaggt gccc 3644 //