Dbfetch
ID AF448059; SV 2; circular; genomic DNA; STD; VRL; 2739 BP. XX AC AF448059; XX DT 16-JAN-2002 (Rel. 70, Created) DT 26-JAN-2007 (Rel. 90, Last updated, Version 6) XX DE Tomato leaf curl New Delhi virus - [PkT1/8] segment DNA-A, complete DE sequence. XX KW . XX OS Tomato leaf curl New Delhi virus - [PkT1/8] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2739 RX AGRICOLA; IND44790013. RA Shih S.L., Tsai W.S., Green S.K., Khalid S., Ahmad I., Rezaian M.A., RA Smith J.; RT "Molecular Characterization of Tomato and Chili Leaf Curl Begomoviruses RT from Pakistan"; RL Plant Dis. 87(2):200-200(2003). XX RN [2] RP 1-2739 RA Shih S.L., Khalid S., Green S.K.; RT ; RL Submitted (15-NOV-2001) to the INSDC. RL Virology Unit, Asian Vegetable Research and Development Center, P.O. Box RL 42, Shanhua, Tainan, Taiwan, Republic of China XX RN [3] RC Sequence update by submitter RP 1-2739 RA Shih S.L., Khalid S., Green S.K.; RT ; RL Submitted (23-MAY-2002) to the INSDC. RL Virology Unit, Asian Vegetable Research and Development Center, P.O. Box RL 42, Shanhua, Tainan, Taiwan, Republic of China XX DR MD5; a01b01d413f097e7a83e35a204eac8c0. DR EuropePMC; PMC2170441; 17963488. XX CC On Dec 2, 2002 this sequence version replaced gi:18139963. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Tomato leaf curl New Delhi virus - [PkT1/8]" FT /segment="DNA-A" FT /host="tomato plant with leaf curl symptoms" FT /mol_type="genomic DNA" FT /country="Pakistan:Islamabad" FT /clone="PakT1(8)" FT /note="isolated in 2000" FT /db_xref="taxon:270143" FT gene 41..427 FT /gene="AV3" FT CDS 41..427 FT /codon_start=1 FT /gene="AV3" FT /product="AV3 protein" FT /db_xref="UniProtKB/TrEMBL:Q8V2A7" FT /protein_id="AAL60215.1" FT /translation="MKFTLHGLFSAWGSINRLAHQVWSHKHVGSIIARISRKRGWSKVH FT ASCKISPRNRKELLGRHSRLRSCPRSHSCSPSKELWRSDQQISSFQRPPRRYADVSTST FT ALMELVQLSPLPASQKQRPGPTGR" FT gene 120..458 FT /gene="AV2" FT CDS 120..458 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:Q8V2A6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q8V2A6" FT /protein_id="AAL60216.1" FT /translation="MWDPLLHEFPESVDGLRCMLAVKYLQEIEKNYWGDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARLEGTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT gene 280..1050 FT /gene="AV1" FT CDS 280..1050 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:Q8V2A5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q8V2A5" FT /protein_id="AAL60217.2" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLIHR FT VGKRFCEKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(310..795) FT /gene="AC5" FT CDS complement(310..795) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:Q8B5T1" FT /protein_id="AAN76349.1" FT /translation="MHVLHRCCARFIVKHIKHFPEILGRSCRTTVTNQKKHDTVSMVFC FT LDVFIHPYLSKHIDGFLTESLPYAMYESGSSGNITNTHDFANMRDIVPGFKGLHLTRAF FT TAPWHVGTSIHSVHSGFSVHRPVGPGLCFCDAGNGDNCTSSIRAVEVETSAYLRGGR" FT gene complement(1047..1457) FT /gene="AC3" FT CDS complement(1047..1457) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:Q8B5T0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q8B5T0" FT /protein_id="AAN76350.1" FT /translation="MITDSRTGEYITADRAESGVYTWVIRNPLYFKILQHDSRPFLTHH FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGI FT CNVLRAVYHVLDNVLERTIDVWTSYDIKLDIY" FT gene complement(1177..1596) FT /gene="AC2" FT CDS complement(1177..1596) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:Q8B5S9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q8B5S9" FT /protein_id="AAN76351.1" FT /translation="MQSSSHSRNHSIPVAKTSLPQKKRKSIRRRRVDLPCGCSYYISIN FT CHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFATRQQALPNTPRHNQDSNTIQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGA" FT gene complement(1499..2584) FT /gene="AC1" FT CDS complement(1499..2584) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:Q8V2A8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q8V2A8" FT /protein_id="AAL60214.2" FT /translation="MASPRRFRVNAKNYFLTYPKCSLTKEEALSQLQTLETPTKKKFIK FT ICREFHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKKYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKDDALKVLKELAPKDYVLQFH FT NLNTNLDRIFQPPSEVYVSLFSISSFDRVPAELVDWVSSNVVCAAARPIRPISIVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRENIAPTEEEEEHPQEES" FT gene complement(2251..2427) FT /gene="AC4" FT CDS complement(2251..2427) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q8B5S8" FT /protein_id="AAN76352.1" FT /translation="MGLRISMFSSNSKGNSSAKITDSSTWFPQAGQHISIRTFRELNQR FT RTLKSTSTKTETF" XX SQ Sequence 2739 BP; 742 A; 588 C; 615 G; 794 T; 0 other; accgaatggc cgcgcaaatt tttaggtggg cccttgacca atgaaattca cgctacatgg 60 cctatttagt gcgtggggat caataaatag acttgctcac caagtttgga gccataaaca 120 tgtgggatcc attattgcac gaatttccag aaagcgtgga tggtctaagg tgcatgctag 180 ctgtaaaata tctccaagaa atagaaaaga actattgggg agacacagtc ggctacgatc 240 ttgtccgaga tctcattctt gttctccgag caaagaacta tggcgaagcg accagcagat 300 atcatcattt caacgcccgc ctcgaaggta cgccgacgtc tcaacttcga cagcccttat 360 ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag caaaggcctg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgacgt gccaaggggc 480 tgtgaaggcc cttgtaaggt gcagtccttt gaatcccggc acgatgtctc tcatattggc 540 aaagtcatgt gtgttagtga tgttacccga ggaaccggac tcatacatcg cgtagggaag 600 cgattctgtg agaaatccgt ctatgtgctt ggaaagatat ggatggatga aaacatcaag 660 acaaaaaacc atactaacag tgtcatgttt tttttggttc gtgaccgtcg tcctacagga 720 tctccccagg atttcgggga agtgtttaat atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttatcaa gtcttacgga agtggcatgc gactgtgacg 840 ggaggaacat atgcatctaa ggagcaagca ttagttagga agtttgttag ggttaataat 900 tatgttgttt ataatcaaca agaggccggc aagtatgaga atcatactga aaatgcatta 960 atgttgtata tggcctgtac tcacgcatca aatcctgtgt atgctacttt gaaaatccgg 1020 atctatttct atgattcggt cacaaattaa taaatatcga gctttatatc atatgaagtc 1080 catacatcaa ttgttctctc caatacatta tctaatacat gatacactgc tcttaataca 1140 ttacaaattc ctattacacc taacatatcc aggtacttaa gcacctgggt tttgaagact 1200 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga ttttgaaagt tagaaaacac 1260 ttgtgaagtc ccagggcttt ccgcaggttg tggttgaatt gtatttgaat cttgattatg 1320 tcgtggtgtg ttaggaaggg cctgctgtcg tgttgcaaaa ttttgaaata caggggattt 1380 cgaattaccc aggtatatac gccactctct gctcgatccg cagtgatgta ttcccctgtg 1440 cgtgaatccg tgatcatggc agttgatcga tatgtaatac gaacaaccac acggcagatc 1500 aactctcctc ctgcggatgc tcttcctctt cttctgtggg agcgatgttt tcgcgaccgg 1560 aatagagtgg ttcctcgagt gtgatgaaga ctgcattctt gattgcccac tgcttcagtg 1620 ctgcattttt ttcttcgtcc agatattcct tatagctgct atttggacct ttattgcaca 1680 ggaagatagt gggaattcca cctttaatca tgactggctt tccgtacttc gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaagtgctt tagatagtgg ggatcaacgt 1800 catcaatgac gttgtaccaa gcatcgttgc tatacacttt tgggctcaga tcaagatgtc 1860 cacacaagta attgtggggt cctaagcacc gagcccacat tgttttgccc gttctactat 1920 ccccctctat gactatgctt atgggcctaa taggccgcgc agcggcacac acaacgttgg 1980 acgagaccca atcgacgagt tctgccggaa ctctgtcgaa ggatgaaatt gaaaatagag 2040 aaacataaac ctcggaagga ggttgaaaaa tgcgatctaa attggtattt aaattgtgaa 2100 attgcagaac ataatccttt ggggctaatt cctttaatac tttcaacgca tcgtctttat 2160 ttcccgtgtt aatcgcttga gcatatgcat cgttcgccgt ctgttgacca ccacgggcag 2220 atcgtccgtc gatctggaaa acaccccatt ctagaacgtc tccgtctttg tcgatgtact 2280 ttttaacgtc cgacgctgat ttagctccct gaatgttcgg atggaaatgt gctgaccggc 2340 ttggggaaac caagtcgaag aatctgttat ttttgcactg gaatttccct tcgaattgga 2400 tgagaacatg gatatgcgga gacccatcct cgtgaaactc tctacagatc ttgatgaatt 2460 tcttcttcgt cggcgtttct agggtttgca attgggaaag tgcctcttct ttagttagag 2520 agcactttgg atatgtgagg aaatagtttt tggcatttac tctaaaacga cgtggcgaag 2580 ccataaaact tgtcgttttg attcggcgtc cctcaactta tctatgtaat tggtgtctgg 2640 agtcctatat ataggtaaga caccatatgg cattattgta attttgaaaa gaaaattact 2700 ttaattcaaa ttccctaaag cggccattcg tataatatt 2739 //