ID AF441393; SV 1; linear; genomic RNA; STD; VRL; 5964 BP. XX AC AF441393; XX DT 22-JAN-2002 (Rel. 70, Created) DT 11-JAN-2006 (Rel. 86, Last updated, Version 3) XX DE Bean leafroll virus, complete genome. XX KW . XX OS Bean leafroll virus OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5964 RX PUBMED; 12075101. RA Domier L.L., McCoppin N.K., Larsen R.C., D'Arcy C.J.; RT "Nucleotide sequence shows that Bean leafroll virus has a Luteovirus-like RT genome organization"; RL J. Gen. Virol. 83(Pt 7):1791-1798(2002). XX RN [2] RP 1-5964 RA Domier L.L., McCoppin N.K., Larsen R.C.; RT ; RL Submitted (29-OCT-2001) to the INSDC. RL Dept. Crop Sciences, University of Illinois, USDA-ARS, 1102 S. Goodwin RL Ave., Urbana, IL 61801, USA XX DR MD5; 9331321a33186f92e3c3b0faee6d269b. DR EuropePMC; PMC2583970; 18937850. DR RFAM; RF00434; BTE. XX FH Key Location/Qualifiers FH FT source 1..5964 FT /organism="Bean leafroll virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:12041" FT CDS join(179..1278,1278..2883) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase P1-P2 fusion" FT /note="ORFs 1+2; low-abundance product derived from -1 FT ribosomal frameshift during translation of ORF1" FT /db_xref="GOA:Q8V2F7" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q8V2F7" FT /protein_id="AAL66234.1" FT /translation="MFNFDSLITASSRVVKDFIHFCYNRARSVYCALKRWLWELQGKFD FT AHNAFVDLCYDAMYGIEKFEEELAEEYTLAESEVALAECHYRYLVSNGAPLTHWPVPCP FT PPGAHRSIDDYEDSVDEAGAFEEVIPSVPKPEPIPSKDGKKDHSKSNPFRVKAFINLVK FT AKEVLQATEQKIKVVYEEEIGESPFGRWFNTLPSRMHYIKRALKKRAVNAKRAKHVTSM FT MKEVNVIPDFVACCEVVQVPTGEMIPPKKNEHGEDVGEPTPKTKMVRRVLPECAAEARS FT YIRQHIRNNNMRLIDGTDVAHATINRYALKFCEELDLDLPSTTMLVDYAMTMVPLPLKN FT DIERAKIVHSPNARRIRDELDCLTSSVFLEGLCSDSGFESPFSILGLPEIVVRSGAIPR FT KSRSKINFLSQFTLGLDYQCPNPSLHNALVAVERRVFTVGKGNEVVRPYSPLQGQFEKM FT NYFRDAIVKDVGCPKTYTPEQLAATFKSGKRSLYNTAVLSLKRKAVEKQDSFVTAFLKM FT EKHMMCKKIAPRLICPRNKRYNVELGRRLKFSEKKFMHAIDNVFKSPTVLSGYDSFKVG FT RIIADKWGRFKRPVAIGVDASRFDQHVSKQALEWEHSIYNGCFRDKQLEELLKWQTENK FT VMLFVEDKILKFKVSGHRMSGDINTSMGNKLIMCGMMHNYFRELGVEAELCNNGDDCVI FT ICERKNEKRFSDMHRWFKEYGFDMQIEKPVYKLTELEFCQSKPVKINGFYRMVRKPQSI FT SKDAHSLISMASAEDVKTFMSATAQCGLILNSGVPVLEAFHNCLYKASGYKHVSQELID FT KVVSFGTQDKLGLRKERVEEPVTMENRLSYWESFGVDPQTQVLVERYFNNLQVSIEPRG FT VKRLTPLLDAKLLNIDIPARCSVSLPTILQ" FT CDS 179..1285 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase P1" FT /note="ORF1" FT /db_xref="GOA:Q8V2F8" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q8V2F8" FT /protein_id="AAL66233.1" FT /translation="MFNFDSLITASSRVVKDFIHFCYNRARSVYCALKRWLWELQGKFD FT AHNAFVDLCYDAMYGIEKFEEELAEEYTLAESEVALAECHYRYLVSNGAPLTHWPVPCP FT PPGAHRSIDDYEDSVDEAGAFEEVIPSVPKPEPIPSKDGKKDHSKSNPFRVKAFINLVK FT AKEVLQATEQKIKVVYEEEIGESPFGRWFNTLPSRMHYIKRALKKRAVNAKRAKHVTSM FT MKEVNVIPDFVACCEVVQVPTGEMIPPKKNEHGEDVGEPTPKTKMVRRVLPECAAEARS FT YIRQHIRNNNMRLIDGTDVAHATINRYALKFCEELDLDLPSTTMLVDYAMTMVPLPLKN FT DIERAKIVHSPNARRIRDELDCLTSSVF" FT CDS 3093..5261 FT /codon_start=1 FT /transl_except=(pos:3681..3683,aa:OTHER) FT /product="coat P3 and systemic movement/aphid transmission FT P5 fusion protein" FT /note="ORFs3+5; translated from subgenomic RNA1 as a fusion FT protein via read-through of the coat protein P3 stop codon; FT may play a role in systemic movement and/or aphid FT transmission" FT /db_xref="GOA:Q8V2F5" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q8V2F5" FT /protein_id="AAL66237.1" FT /translation="MVARGKRVVVRQLQTRARRRLPVVLATAPVRPQRKRRQRGRNNKS FT RGGNGFARRSSQVHEFVFSKDNLNGNSKGSITFGPSLSECKPLADGILKAYHEYNITNV FT ELAYITEASSTSSGSIAYELDPHLKNTTIQSKINKFSITKSEKKKFSRKAINGQAWHDT FT SEDQFRILYEGNGDAKIAGSFRVTIKVLTQNPKXVDGEPDPPGPGPDPPPPTPAPTPQP FT QPTPKHERFIVYTGVPESRISAQSTDDSISVYSLQNQRLRYIEDENANWTNIEARWYSN FT NNVKATPMFIFPVPQGKWSVEISTEGYQPTSSTTDPNNGKCDGLIAYSDDDKTDVWNVG FT VQKNITLSNNKADNTWKYGHPDLEINNCKFNNRQVLERDAYISFHVETTGPNASFFLVA FT PPVQKTARYNYAVSYGAWTDRMLEFGSVTVALDEHLEGGNSSRYIRRSPRPGHLESTRT FT YDLHLLPHMDDLIAANTTAVVDGYGSSISIDRQVLVAVDNHIVDSGDETDDLPGYSSSS FT SEAPKLPAVNQTKLPPKGFLSRLRESEIEEIADKPTEITTPEVRQLADATHQPFAAGMY FT NDAFERLSINEKKRNFDSVKDDIAEIERTLPKEEYRVPKLPRIKPASEVDNDHYGESQQ FT TLAEIERRNVWASKDDAVAVESPPPGYPLGPIEARELMPVEWSRPDYEPPKPKKSLFGR FT LKSQAKVEANPSSPRNDIRRSSFSSFRR" FT CDS 3093..3683 FT /codon_start=1 FT /product="coat protein P3" FT /note="ORF3; translated from subgenomic RNA1; occasional FT read-through of stop codon produces P3-P5 fusion protein" FT /db_xref="GOA:Q8V2F6" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q8V2F6" FT /protein_id="AAL66235.1" FT /translation="MVARGKRVVVRQLQTRARRRLPVVLATAPVRPQRKRRQRGRNNKS FT RGGNGFARRSSQVHEFVFSKDNLNGNSKGSITFGPSLSECKPLADGILKAYHEYNITNV FT ELAYITEASSTSSGSIAYELDPHLKNTTIQSKINKFSITKSEKKKFSRKAINGQAWHDT FT SEDQFRILYEGNGDAKIAGSFRVTIKVLTQNPK" FT CDS 3238..3666 FT /codon_start=1 FT /product="movement protein P4" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q8V2F4" FT /protein_id="AAL66236.1" FT /translation="MDLPEDQARFTNSYSLRTTSMETPREVSRSGRLYQSASRSQMAYS FT RPTMSIISRTSSWRTSPRPLPPPQVPSLMNSILTSRTQQSSPKLTNSASPSLRRKSSLG FT RLSMDRHGTTLQRTNSGFSMKETETPRLLDRSESLSRY" XX SQ Sequence 5964 BP; 1740 A; 1317 C; 1391 G; 1514 T; 2 other; ggtaaagttg acacctttac aagagcaggt tttacaagtt gactacttgt gtattggaaa 60 cctcactgcc caacgcctcc gtatcgcgat tgcagtttac attagtgtct tttaaatgtt 120 taacctcact gcccaacgcc tccgtaycgc gattgcagtt tgtattagtr tcttttaaat 180 gtttaatttt gatagcttga tcaccgcgtc ttcgcgggtg gtcaaagatt ttattcattt 240 ttgttacaat agggcaaggt cagtatactg tgcccttaaa cgctggctgt gggagctgca 300 gggaaaattt gatgcacata atgcgtttgt tgatctctgc tacgatgcca tgtatggcat 360 tgaaaaattt gaggaggagc tagccgagga atataccctg gctgaatctg aagtcgccct 420 agctgagtgc cattataggt acttggttag caatggtgct cccctcaccc actggccggt 480 accttgcccg cctcctggtg ctcatcgttc catagatgac tatgaagatt ctgtggacga 540 ggctggggca tttgaggaag tgattccctc tgtgcctaaa cctgaaccta tcccttctaa 600 ggatgggaag aaggaccact ctaaaagtaa tccttttagg gttaaagctt tcattaacct 660 cgtgaaagca aaagaggttc tacaggccac tgaacaaaaa attaaggtgg tctatgagga 720 agagattgga gagagcccct ttggaaggtg gtttaatact ctcccgtccc gcatgcatta 780 catcaagcgt gcgctgaaga aacgtgctgt caacgcaaag agagcaaagc acgtaacaag 840 catgatgaag gaagtcaacg tgattcctga cttcgtcgca tgctgtgaag tcgtccaggt 900 acctactggc gaaatgatac ccccaaagaa aaatgaacat ggggaagatg ttggcgaacc 960 cactcccaaa acaaaaatgg tgagaagggt actccccgaa tgtgcagctg aagcgcgttc 1020 gtacataagg cagcatatcc gtaataacaa catgcgcctt attgacggca ctgacgtggc 1080 ccacgctacc ataaataggt atgcgttaaa gttctgcgag gaacttgatc tggatctacc 1140 aagcacaact atgctggttg attatgccat gactatggtc ccccttcccc tcaaaaatga 1200 cattgagagg gcgaagatag ttcactcacc taatgctaga cgcattagag atgagttgga 1260 ctgtctcacc tcatcggttt tttagagggg ctctgctccg actctggttt tgaatccccc 1320 ttttctattt tgggattacc agagatcgtg gtgcgtagcg gggctatccc taggaagagt 1380 cgtagtaaga ttaattttct tagtcagttt accctaggcc tagattacca gtgtcctaat 1440 cccagcttgc acaatgcact ggtcgcagtt gaacgtcgag tgttcactgt aggaaaagga 1500 aatgaggtgg tgcgtcctta ctctcccctt cagggtcagt ttgaaaagat gaactacttt 1560 agagatgcta ttgttaagga tgttggatgt ccaaagacat acacaccaga acaacttgct 1620 gccactttca aatctgggaa gaggtcgctg tacaacacag cggttctctc cttgaagagg 1680 aaagctgttg agaagcaaga ttcgtttgtt acagcatttt tgaagatgga aaaacatatg 1740 atgtgtaaga agatcgcacc cagacttatc tgcccccgaa ataaacggta caatgttgaa 1800 ttagggcggc ggcttaaatt ctctgagaag aaatttatgc acgcaataga taatgtcttt 1860 aaatccccca ccgttctcag cggttatgat agtttcaaag tgggaaggat tatagccgat 1920 aaatggggca ggtttaagcg ccccgtagcc attggtgttg atgccagtcg ctttgaccaa 1980 catgtcagca agcaggccct agaatgggaa cactctattt ataatgggtg ttttcgagac 2040 aaacaactag aggaactctt gaaatggcaa acagaaaaca aagttatgct gtttgttgaa 2100 gataagatat tgaagttcaa agtgtctgga cacagaatgt caggagacat caacacatca 2160 atgggcaaca aattgatcat gtgcgggatg atgcacaatt acttcagaga gcttggtgta 2220 gaagctgagc tatgcaacaa tggagatgat tgtgtcatta tctgtgagcg aaaaaacgag 2280 aaaagattct cagatatgca cagatggttt aaggaatatg gcttcgatat gcagatagag 2340 aaacccgttt acaaactaac ggagttagaa ttttgccaat ccaaaccggt caagatcaac 2400 ggcttttaca gaatggtgcg taaaccacag tctatttcaa aggacgcaca ttctctcatt 2460 tccatggcat cagctgaaga tgtcaagacc ttcatgagtg ctactgctca atgcgggtta 2520 attttaaata gtggagtacc cgtgttggaa gcatttcata attgcctata caaagcttcc 2580 gggtacaaac atgtttcgca ggaactaatc gacaaggtag tctcctttgg cacgcaagac 2640 aaactcgggc tcaggaaaga gcgagttgaa gagccagtaa ctatggaaaa taggttgagt 2700 tactgggagt cttttggggt tgacccgcaa actcaggtcc ttgttgaacg atacttcaac 2760 aatttgcagg ttagcatcga gccccgtggc gtaaagagat tgacgccttt acttgacgcg 2820 aaacttttaa acatagacat ccctgctaga tgctctgtgt ccttacccac tattctgcag 2880 tagattatat tatattatta gtagctatta ttatattagt agttctcaac ctcttgctta 2940 gctattgcct gagaagagaa gaataggttc cttcgattac aagttcttag ctgcgtttgt 3000 gttgggcttt gtatccaaca ttccagttac agcattggga atctatattg tttaccaacg 3060 gattctaaaa gagatcagag aaataatcaa cgatggtcgc tagaggaaaa cgagttgtcg 3120 ttcgacaatt acagacccgc gcaaggagac gtttaccagt cgttctggct acggcccctg 3180 tgcgaccaca acgaaaacga cgacaacgag gacgaaataa caaatctcga ggaggaaatg 3240 gatttgcccg aagatcaagc caggttcacg aattcgtatt ctctaaggac aacctcaatg 3300 gaaactccaa gggaagtatc acgttcgggc cgtctctatc agagtgcaag ccgctcgcag 3360 atggcatact caaggcctac catgagtata atatcacgaa cgtcgagctg gcgtacatca 3420 ccgaggcctc ttccacctcc tcaggttcca tcgcttatga actcgatcct cacctcaaga 3480 acacaacaat ccagtccaaa attaacaaat tcagcatcac caagtctgag aagaaaaagt 3540 tctctcggaa ggctatcaat ggacaggcat ggcacgacac ttcagaggac caattcagga 3600 ttctctatga aggaaacgga gacgccaaga ttgctggatc gttcagagtc actatcaagg 3660 tattaactca gaatccaaaa taggtagacg gagaaccgga tcctccgggc cctggcccag 3720 atccaccacc accaacacct gcaccaacac cacaaccaca gccaacgccg aagcacgaaa 3780 gattcatcgt ttatactggc gtacccgagt cccgcattag tgcgcaatca acggatgatt 3840 caatctccgt ttattctttg caaaatcaaa gattgcgata catcgaggac gaaaatgcga 3900 actggacgaa tattgaagcc aggtggtact ctaacaacaa tgttaaagcc accccgatgt 3960 ttatttttcc agttcctcaa ggcaagtggt cggttgagat atctactgaa gggtaccaac 4020 caacgtcaag cacaacagac cctaataatg ggaaatgcga tggattgatc gcttacagtg 4080 atgatgacaa gacggatgtt tggaatgtag gagtgcaaaa gaacataacc cttagcaaca 4140 acaaggccga caacacgtgg aagtatggcc acccagactt ggagattaac aactgcaagt 4200 tcaacaatag gcaagtcctg gaacgcgatg cgtacatttc gttccatgtt gaaacaactg 4260 ggcccaatgc ttccttcttc ttagttgcgc ctccagttca aaagactgct cggtataatt 4320 atgccgtatc ttatggagct tggactgata ggatgctaga gtttggttct gttactgttg 4380 cacttgatga acatttagaa ggtggtaaca gttctcgata tattaggagg tcaccaaggc 4440 caggacacct tgagtcgaca agaacatatg atttgcactt attgcctcat atggacgatc 4500 tcatagccgc caacactaca gctgttgtag atggctatgg gagtagtatt agtatagata 4560 gacaagtctt agttgccgtt gacaatcata tagtagattc cggcgacgag acggatgatc 4620 ttccaggtta ttcaagctca tcttctgaag cacctaaatt acctgccgtt aatcaaacga 4680 agttgccacc aaaagggttt ctgtccaggt tgcgagagtc cgagatcgaa gagatagcgg 4740 acaaaccaac cgagataaca acacctgagg ttagacaact agctgatgcc acacatcagc 4800 cttttgccgc agggatgtac aatgacgctt ttgagcgact gtccataaat gaaaagaaac 4860 gcaattttga ttccgtcaag gatgatattg ctgaaataga gaggacattg ccaaaagaag 4920 agtacagggt gccaaaactg ccacgcatca agcccgcttc cgaagtggat aacgatcact 4980 atggtgaaag tcaacaaact ttggcagaga tcgaaagacg taacgtctgg gccagtaaag 5040 atgacgctgt tgcggttgaa tctccacccc cgggttatcc tcttgggcca attgaggcta 5100 gggagttaat gccggttgag tggagtagac cagattatga gcccccgaaa cctaagaagt 5160 cattgtttgg cagactcaag tcacaagcca aggtagaagc taatccttct tctcctcgca 5220 atgacataag aagatcatct tttagtagct ttcgtagata gacatctcta gactcactga 5280 gagccaacgc agcgccacta gtgcatcgaa tcctgggaaa caggcacgga gaacaaaatc 5340 cggtaagctc gggaagccgt caacttccgc cgtattgatg aaaacaactt ggccgacgct 5400 gttaataacc ttagcatctt gagttctact aaaaattaga tagttttccg cctcttccaa 5460 aagttgccac cttttggaat gtgagataga tggagagagg ttgccttgaa taagcaactg 5520 ttgatgtctg ctggtattga gtccaatgat caaaactcac gttgcttctg acgtatacac 5580 tgcccctgat tcaacagggt aaacaaattt gcgccacctc gatgagatga gagtgaagcg 5640 cggagtaaag agttgcatct acttttgtag gttgcaactc tggggagttt tgtagcaggc 5700 caaaagccaa actagttctt cctcgtacgg aaacaaaaac aggtatgatt gttcggacat 5760 cattggtact agttgccaat gtacagatgg tctaacagat accccccctc tgctcgggtt 5820 taaatgtcag cgctggctct tcagcgacaa caagggggcg ttcctgcttg cctcccaatg 5880 gatcctgcag gaacaggtct tcgaatcttt atgagatttg cggacctctt tgttgttaag 5940 gtggcgaaag cgcccacctg cccc 5964 //