Dbfetch

Dbfetch

ID   AF441235; SV 2; linear; genomic RNA; STD; VRL; 1277 BP.
XX
AC   AF441235;
XX
DT   11-FEB-2002 (Rel. 70, Created)
DT   20-JUL-2006 (Rel. 88, Last updated, Version 4)
XX
DE   Grapevine virus A JP98 movement protein gene, partial cds; and coat protein
DE   and ORF5 genes, complete cds.
XX
KW   .
XX
OS   Grapevine virus A
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus.
XX
RN   [1]
RP   1-1277
RA   Goszczynski D.E., Jooste A.E.C.;
RT   "Identification of divergent variants of Grapevine virus A";
RL   Eur. J. Plant Pathol. 109:397-403(2003).
XX
RN   [2]
RP   1-1277
RX   DOI; 10.1016/S0166-0934(03)00198-8.
RX   PUBMED; 12951225.
RA   Goszczynski D.E., Jooste A.E.;
RT   "Identification of grapevines infected with divergent variants of Grapevine
RT   virus A using variant-specific RT-PCR";
RL   J. Virol. Methods 112(1-2):157-164(2003).
XX
RN   [3]
RP   1-1277
RA   Goszczynski D.E., Jooste A.E.C.;
RT   ;
RL   Submitted (31-OCT-2001) to the INSDC.
RL   Plant Virology, Plant Protection Research Institute, Private Bag X134,
RL   Pretoria 0001, South Africa
XX
RN   [4]
RC   Sequence update by submitter
RP   1-1277
RA   Goszczynski D.E., Jooste A.E.C.;
RT   ;
RL   Submitted (19-JUL-2006) to the INSDC.
RL   Plant Virology, Plant Protection Research Institute, Private Bag X134,
RL   Pretoria 0001, South Africa
XX
DR   MD5; 9d54c8867f945bc8c2a50a21200dc247.
XX
CC   On Jul 19, 2006 this sequence version replaced gi:18642558.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1277
FT                   /organism="Grapevine virus A"
FT                   /isolate="JP98"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:35288"
FT   CDS             <1..>234
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="ORF3; coding region disrupted by sequencing gap"
FT                   /db_xref="UniProtKB/TrEMBL:Q0WX60"
FT                   /protein_id="ABG76013.1"
FT                   /translation="LNKALHRGDVYDTELIEKVFPRRTKKCVVHRELIVKDGRVDCDLD
FT                   LMDSGLDDVDEDEFPLYHVGCIVVALMPHGKNL"
FT   gap             235..334
FT                   /estimated_length=unknown
FT   CDS             <335..434
FT                   /codon_start=2
FT                   /product="movement protein"
FT                   /note="ORF3; coding region disrupted by sequencing gap"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QYT7"
FT                   /protein_id="AAL76172.1"
FT                   /translation="KKLGLKTNGSLRKEGGNEGYHRGVGAGESHPN"
FT   CDS             358..954
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF4"
FT                   /db_xref="GOA:Q8QYT6"
FT                   /db_xref="InterPro:IPR008879"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QYT6"
FT                   /protein_id="AAL76170.1"
FT                   /translation="MAHCAKKVEMRAIIEELVLAKATPTEDATESGYDRTMYLNTLFGY
FT                   IALVGTSKKAIHYGEVDIVGPRASKKMGIDPRGKLVVSELVGRMRTLSVAVSEGPVKGA
FT                   TLRQMCEPFAQNAYDFLVLMAEMGTYSQLATKMTRSGFKEPQVMFDFASGLDLKALTLQ
FT                   EATVIQAMHSRLFRTEGAKGVFNAQASVGEQAVEL"
FT   CDS             955..1227
FT                   /codon_start=1
FT                   /product="ORF5"
FT                   /db_xref="InterPro:IPR008891"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QYT5"
FT                   /protein_id="AAL76171.1"
FT                   /translation="MDDPSFLAGRSTYAKRRRARRMNVCRCGAIMHNNKDCKSSSISGH
FT                   KLDRLRFVKEGRVALTGETPVYRTWVKWVETEYHIYVLETSDDEE"
FT   3'UTR           1228..>1277
XX
SQ   Sequence 1277 BP; 319 A; 238 C; 354 G; 266 T; 100 other;
     ctgaacaagg ccctgcacag gggggatgtc tatgatactg agctgataga gaaggtattc        60
     ccacggagaa ccaagaagtg cgtggtgcac agggaactca tcgtcaaaga cggtcgcgta       120
     gattgtgatc tggacctgat ggactccggt cttgacgacg tagatgagga tgagttccct       180
     ctgtaccacg ttggttgcat agtcgtggca ttgatgcccc atggcaagaa tctannnnnn       240
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       300
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnaaagaa gctggggttg aagacaaatg       360
     gctcactgcg caaagaaggt ggaaatgagg gctatcatcg aggagttggt gctggcgaaa       420
     gccaccccaa ctgaagacgc tactgagagc ggctacgacc gaacaatgta cctgaatact       480
     ctcttcgggt acatcgcctt ggtcggtact agcaaaaagg cgatccatta tggagaggta       540
     gatatagtag gacctagagc tagcaagaag atggggatag acccgcgtgg gaagttggtt       600
     gtgtccgagc tggtgggaag gatgaggact ctgagcgtgg ctgtaagcga ggggcccgtc       660
     aaaggggcta cactcaggca gatgtgtgaa cctttcgcac agaacgccta tgatttcctc       720
     gtgttaatgg cggaaatggg cacttactcg cagttagcaa ctaagatgac aaggtcaggc       780
     ttcaaggagc cacaggttat gttcgatttc gcatcgggct tagatctgaa agcactgaca       840
     ttacaggaag ctactgtgat acaggccatg cactcgcgtc tctttcggac agagggtgct       900
     aaaggagtgt tcaacgccca ggcttcggtt ggcgaacagg ctgttgagtt atagatggat       960
     gacccatcgt ttctcgcggg taggtctacg tatgctaagc gtaggcgcgc taggcgcatg      1020
     aatgtgtgta ggtgtggtgc tataatgcac aataataagg attgcaaatc cagtagtatc      1080
     tctggtcaca agctcgatag gctgaggttc gtgaaagagg gaagagtagc cctgacgggc      1140
     gagactcctg tttaccggac ctgggtcaag tgggtggaga ctgagtatca tatatatgta      1200
     ctagaaacct cagacgatga ggaataatcg tctatcctag ctaaggagtt gataataaca      1260
     taataataaa gcaagct                                                     1277
//