ID   AF441234; SV 2; linear; genomic RNA; STD; VRL; 1277 BP.
XX
AC   AF441234;
XX
DT   11-FEB-2002 (Rel. 70, Created)
DT   19-JUL-2006 (Rel. 88, Last updated, Version 4)
XX
DE   Grapevine virus A 92/778 movement protein gene, partial cds; and coat
DE   protein and ORF5 genes, complete cds.
XX
KW   .
XX
OS   Grapevine virus A
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus.
XX
RN   [1]
RP   1-1277
RA   Goszczynski D.E., Jooste A.E.C.;
RT   "Identification of divergent variants of Grapevine virus A";
RL   Eur. J. Plant Pathol. 109:397-403(2003).
XX
RN   [2]
RP   1-1277
RX   DOI; 10.1016/S0166-0934(03)00198-8.
RX   PUBMED; 12951225.
RA   Goszczynski D.E., Jooste A.E.;
RT   "Identification of grapevines infected with divergent variants of Grapevine
RT   virus A using variant-specific RT-PCR";
RL   J. Virol. Methods 112(1-2):157-164(2003).
XX
RN   [3]
RP   1-1277
RA   Goszczynski D.E., Jooste A.E.C.;
RT   ;
RL   Submitted (31-OCT-2001) to the INSDC.
RL   Plant Virology, Plant Protection Research Institute, Private Bag X134,
RL   Pretoria 0001, South Africa
XX
RN   [4]
RC   Sequence update by submitter
RP   1-1277
RA   Goszczynski D.E., Jooste A.E.C.;
RT   ;
RL   Submitted (18-JUL-2006) to the INSDC.
RL   Plant Virology, Plant Protection Research Institute, Private Bag X134,
RL   Pretoria 0001, South Africa
XX
DR   MD5; d44804b8ce2884c2ada874efd83e27be.
XX
CC   On Jul 18, 2006 this sequence version replaced gi:18642554.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1277
FT                   /organism="Grapevine virus A"
FT                   /isolate="92/778"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:35288"
FT   CDS             <1..>234
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="ORF3; coding region disrupted by sequencing gap"
FT                   /db_xref="UniProtKB/TrEMBL:Q0WX61"
FT                   /protein_id="ABG73580.1"
FT                   /translation="LNKALHRGDVYDTELIEKVFPRRTKKCVIHKELIVKDGRVDCDLD
FT                   IMDEGLDDIDEVEFPLYHVGCIVVALMPHGKNL"
FT   gap             235..334
FT                   /estimated_length=unknown
FT   CDS             <335..434
FT                   /codon_start=2
FT                   /product="movement protein"
FT                   /note="ORF3; coding region disrupted by sequencing gap"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QYU0"
FT                   /protein_id="AAL76169.1"
FT                   /translation="KKLGLKTNGSLRQEGGDKGDNRRVGAGESPAN"
FT   CDS             358..954
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF4"
FT                   /db_xref="GOA:Q8QYT9"
FT                   /db_xref="InterPro:IPR008879"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QYT9"
FT                   /protein_id="AAL76167.1"
FT                   /translation="MAHYAKRVEIRAIIEELVLAKAQPTDDASESGYDRTMYLNTLFGY
FT                   IALVGTSKKAVHYGEVDIVGPKASKKTGIDPRGKLVVSELVGRMRTLSVAVSEGPVKGA
FT                   TLRQMCEPFAQNAYDFLVLMAEMGTYSQLATKMTRSGFKEPQVMFDFASGLDLKALTLQ
FT                   EATVIQAMHSRLFRTEGAKGVFNAQSSVGEQAVEI"
FT   CDS             955..1227
FT                   /codon_start=1
FT                   /product="ORF5"
FT                   /db_xref="InterPro:IPR008891"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QYT8"
FT                   /protein_id="AAL76168.1"
FT                   /translation="MDDPSFLSGRSTYAKRRRARRMNVCKCGAIMHNNKDCKSSSISGH
FT                   KLDRLRFVKEGRVALTGETPVYQTWIEWVQTEYHIYILETSDDED"
FT   3'UTR           1228..>1277
XX
SQ   Sequence 1277 BP; 338 A; 244 C; 335 G; 260 T; 100 other;
     ctgaacaagg ccctgcacag aggcgatgtg tacgatactg agctcataga gaaggtcttc        60
     cccaggagaa caaagaagtg cgtgatccac aaggaactca tagtcaagga tggtcgcgtg       120
     gactgtgacc tggacataat ggatgagggc ctggacgaca tagacgaggt ggaattcccg       180
     ctctatcatg tagggtgcat tgtggtggca ctgatgcccc atggcaagaa tctannnnnn       240
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       300
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnaaagaa acttgggttg aagacaaatg       360
     gctcattacg ccaagagggt ggagataagg gcgataatag aagagttggt gctggcgaaa       420
     gcccagccaa ctgatgacgc ttccgagagc ggctacgacc gaactatgta cctgaatact       480
     ctcttcgggt acatcgcctt ggtcggtaca agcaaaaagg cggtccacta tggggaggta       540
     gatatagtag gtcctaaagc tagcaaaaag acaggaatag atccgagggg aaagttggtc       600
     gtgtcagaac tggtgggcag gatgcgcact ctgagcgtgg cagtcagcga gggacccgtc       660
     aagggggcaa ccctaaggca gatgtgcgaa ccattcgcac agaacgctta cgatttcctc       720
     gtactgatgg ctgagatggg cacgtactca cagttagcta ccaagatgac taggtcaggc       780
     ttcaaggagc cacaggttat gttcgacttt gcgtcgggct tagatctgaa agcgctgaca       840
     ttgcaagaag ctactgtgat acaggctatg cactctcgcc tctttcgtac agaaggcgcg       900
     aagggggtgt tcaacgccca gtcatcagtt ggcgaacagg ctgtcgaaat atagatggat       960
     gacccatcgt ttctctcggg taggtccacg tatgctaagc gtaggcgcgc taggcgcatg      1020
     aatgtgtgta agtgtggtgc tataatgcac aataataagg attgtaaatc cagtagtatc      1080
     tctggtcaca aacttgacag attacggttc gtgaaagagg gaagagtagc cttaacaggc      1140
     gagactcctg tttaccaaac ttggatcgaa tgggttcaga ccgagtatca tatatatata      1200
     ttagaaacct cagacgatga ggattaatcg tctatcctag ctaaggagta aagtataact      1260
     taataataaa gcaagct                                                     1277
//