ID AF427517; SV 1; linear; genomic RNA; STD; VRL; 6997 BP. XX AC AF427517; XX DT 23-OCT-2001 (Rel. 69, Created) DT 09-JAN-2022 (Rel. 144, Last updated, Version 4) XX DE Pichinde virus large RNA segment, complete sequence. XX KW . XX OS Pichinde virus OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Arenaviridae; Mammarenavirus. XX RN [1] RP 1-6997 RX DOI; 10.1006/viro.2001.1127. RX PUBMED; 11883003. RA Zhang L., Marriott K.A., Harnish D.G., Aronson J.F.; RT "Reassortant analysis of guinea pig virulence of pichinde virus variants"; RL Virology 290(1):30-38(2001). XX RN [2] RP 1-6997 RA Harnish D.G., Zheng S., Polyak S., Scheid E.E.; RT ; RL Submitted (03-OCT-2001) to the INSDC. RL Pathology and Molecular Medicine, McMaster University, HSC 1J11, 1200 Main RL St. W., Hamilton, Ontario L8N 3Z5, Canada XX DR MD5; 345aae07d9f48fdc90d3b2a4026d21ae. DR EuropePMC; PMC2680969; 19478873. DR EuropePMC; PMC3210867; 21982818. XX FH Key Location/Qualifiers FH FT source 1..6997 FT /organism="Pichinde virus" FT /segment="L RNA" FT /strain="AN3739" FT /mol_type="genomic RNA" FT /db_xref="taxon:2905917" FT CDS 31..6603 FT /codon_start=1 FT /gene="L" FT /product="L polymerase" FT /db_xref="GOA:Q915A5" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR010453" FT /db_xref="InterPro:IPR026382" FT /db_xref="PDB:4I1T" FT /db_xref="UniProtKB/TrEMBL:Q915A5" FT /protein_id="AAL16099.1" FT /translation="MEEYVSEFKDMVRKWVPEWEELSEQKNNVLAQVKDRAITIEGLKL FT LSMLVEVDSCKKHSCRHNTRMTVNAILRELKVTCPTLPDVTPDGYCMVGDVLILLEVFV FT RTSQEAFEKKYNQDFLKLMQLSSDLKRQNITLVPVIDGRSSYYVEYIPDWVVERLRWLL FT LKLMDGLRTSGEEVEELEYERLISSLSSLENQSLGLESLLAVKERGLPYKVRLEKALVS FT CINNKLTTDQCRTKIMEVFQQFKMLQLSGQHDRKLQATDREDMISKLQNHEFIQCSIKD FT MPKSEIRLCEFCSVHILGIIDQLRQSEIRHPSIESKEYFRVLSICNKIKSQKVFNTRRN FT TLLVLDLIMYNILCDLDKSSPGTVFREVLLMQGLPSVNDRLINVDFLIEQITKKFIKNP FT SWLEKAKKRLSLVCSEFPLDDILPLLREPDIEYYFDLKTSILDEWGAKPYLQYKTKSRC FT MCGGRPGRGQPDYAIMGESEFEELLKALSSLSLSLINSMKTAAVPKMKVNNADEFYGKV FT YCDEVFFQRFGEGGSLTLLYQKTGERSRCYAVAFRSKSGGLYETKASFYCDPKRFFLPI FT FSADVIQRTCEEMLSWLDFMSQPLLDLVSDLLRRLILCILCTPSKRIQIYLQGFRYYIM FT AFVNEVHFKELFEKLKVVMLTPSEWQTAILIDDLILLVLNNSREEDMAKIFKFVLNVSY FT LCHFITKETPDRLTDQIKCFEKFLEPKLKFDSVLVNPSNSMELPIEEEEKMVHDMERLL FT SKKLESKCEGRPGINKDVLSVCLSLFNNGSLEVKPSSSCDPMTPSFTSTALDMSSNKSV FT VVPKLDEVGEVITEYDYSSIVSAVVVEIVEHFKTKGKYKLDPKEINFKILKRLSSLIQI FT KKESVEPDETEELLSEDQSDCLKEIETRVSKVLSKVDTNVKPDLKTPCPLERLCPKSTM FT VIIKRETSLHDVKDFDYNLFSAEVYEDLVNLIYEDVTARSMYFADRLMNPCPLEYLIKN FT LTLKAYKEADYFECFKYILIASDFDNRVGRYDHKSRSRLGFTDAALQIRETSRISSRES FT NSESIAKRLDQSFFTNSSLRNLCFYSDESPTERSSVSTNVGRLKFGLSYKEQVGGNREL FT YVGDLNTKLTTRLIEDYSESLMQNMRYTCLNNEKEFERALLDMKSVVRQSGLAVSMDHS FT KWGPHMSPVIFAALLKGLEFNLKDGSEVPNAAIVNILLWHIHKMVEVPFNVVEAYMKGF FT LKRGLGMMDKGGCTIAEEFMFGYFEKGKVPSHISSVLDMGQGILHNTSDLYGLITEQFI FT NYALELCYGVRFISYTSSDDEIMLSLNEAFKFKDRDELNVDLVLDCMEFHYFLSDKLNK FT FVSPKTVVGTFASEFKSRFFIWSQEVPLLTKFVAAALHNIKAKAPNQQADTIDTILDQC FT VANGVSIEVVGAIAKRTFSMIIYSGFPNDPFLCLEEMDVLDWVNGSRGYRLQRSIESLF FT PDDLLLSIIRKACRKIFYKIQSGALEESYIVTTLQQSPDDCLKQLLETCDVETEAIEDA FT LDIRWLNLRVHGDLRLVLRTKLMSTTRTVQREEIPSLVKSVQSKLSKNYVRGAKKILAD FT AINKSAFQSSVASGFIGVCKSMGSRCVRAKRGIQIHQDHTGKITLHRDCHHCNQRKGVY FT CKAALSEVSEYSRPLIWDYFALVLTNACELGNWVFQKAEVPKIVTHLNNPNHFWPIKPS FT THSELEDKVGINHILYSIRRNFPTLFDEHISPFLSDLNMLRLSWVQKIKFLDLCVAIDI FT TSECLGIVSHIIKHRREELYIVKQNELAMSHSRESHPLERDSTLSQRVCANFLIQILFE FT SMLVPVIMSTSQFKKYFWFGEVELLPNNAQHDLKQLTQFVCDCKKNNTSRTMNLDDLDV FT GFVSSNLILSCANLNISVFINELDWMNRDDYENMEQHILASPSEIIPIELNLTFSHKRV FT SHKFRYERSTNYILKLRFLIERGSLLDSLDCDGYLLLKPHSVEYYVLNPLKSHKLDGVS FT LLVLNPLINGKDVLDFNDLLEDQDVRFKSRSAVFQKVKLDMKDYFKDLKNKFSYKLIGP FT DVGMQPLILENGLIKKEQSVSRLEVNLDSKVVIIRLEALEPEKRSKFIANLFQYLSSAQ FT SHNKGIIMTEQDLRYMIENFPEVFEHMLHDAKDWLNCGHFSIVKSKTLGTVMIADEKGP FT FKIKGIRCRKLFEDNESVEIE" FT gene 31..6603 FT /gene="L" FT CDS complement(6659..6946) FT /codon_start=1 FT /gene="Z" FT /product="Z protein" FT /db_xref="GOA:Q915A4" FT /db_xref="InterPro:IPR003224" FT /db_xref="InterPro:IPR024183" FT /db_xref="InterPro:IPR038485" FT /db_xref="UniProtKB/TrEMBL:Q915A4" FT /protein_id="AAL16100.1" FT /translation="MGLRYSKEVRESHGDEDVVGRVPMTLNLPQGLYGRFNCKSCWFVN FT KGLIRCKDHYLCLGCLTKMHSRGHLCEICGHSLPTKMEFLESPSAPPYEP" FT gene complement(6659..6946) FT /gene="Z" XX SQ Sequence 6997 BP; 2187 A; 1273 C; 1553 G; 1984 T; 0 other; cgcaccgagg atcctaggca tttcttgatc atggaggaat acgtttccga atttaaagac 60 atggtaagaa aatgggttcc agaatgggaa gagttatctg agcagaagaa taacgtgctt 120 gcacaggtta aagacagagc catcacaata gaaggcctga aactcttatc catgttggta 180 gaggtggact catgtaagaa acattcctgc agacacaaca caagaatgac tgtcaatgct 240 atccttagag agttgaaagt cacatgtcct acactaccgg atgtcacacc agatggctac 300 tgcatggttg gagatgtcct catccttttg gaagtgtttg tgaggaccag tcaagaagca 360 tttgaaaaaa agtacaatca ggacttcttg aaattgatgc agcttagttc tgatctcaag 420 aggcagaata taactttagt acctgttatt gatggtagat ccagctatta tgtggaatat 480 attcctgatt gggttgtaga gaggcttcgg tggttgctct tgaagcttat ggatggactg 540 aggacatctg gtgaagaagt tgaggaattg gagtacgaac gccttataag ttccctgtca 600 tctttggaaa atcagagtct tggtttagaa tcactacttg ccgtgaaaga aagaggactt 660 ccttacaagg tgaggttaga aaaggcattg gtgtcttgca ttaataacaa attgacaaca 720 gatcaatgca gaacaaagat catggaagtt tttcagcaat ttaaaatgtt gcaactctct 780 ggccaacatg ataggaaact gcaagctaca gatagagaag atatgatctc caaactccag 840 aaccatgaat tcatccaatg ttctatcaaa gatatgccta aatcagaaat cagattatgt 900 gaattttgtt cagtacatat tttaggcata atagaccaac ttaggcaatc tgaaatcagg 960 cacccatcaa tcgaaagcaa agagtacttc agagtgcttt caatatgtaa caaaattaag 1020 tcccagaagg tttttaacac aagaaggaac actttattgg ttttggacct catcatgtac 1080 aacatcttgt gtgacttaga caaatcttct ccaggcactg tgttcagaga ggtgctctta 1140 atgcaagggc tgccgtctgt aaatgacagg ttaattaatg ttgatttctt aatagagcaa 1200 atcaccaaaa aatttatcaa aaatcccagt tggttggaga aagccaagaa aagactaagt 1260 ctggtgtgta gtgaatttcc tcttgatgac atcttgcctc ttctaaggga accagacatt 1320 gaatactact ttgatctaaa aacatcaata ttagatgagt ggggagccaa gccttatctt 1380 caatacaaga ctaagtcacg gtgtatgtgt ggaggtagac cagggagggg gcaacctgat 1440 tatgcaatta tgggtgaaag tgagtttgag gagttgttga aagcattgtc aagtctaagt 1500 ttgtcactca ttaacagcat gaagacagca gcagttccta agatgaaagt gaacaatgct 1560 gatgagtttt atggaaaggt ctactgtgat gaagttttct ttcaacgatt tggagaaggg 1620 ggctctctca cactattgta ccaaaagaca ggagagagat ccaggtgtta tgctgttgct 1680 ttcagatcca aaagtggagg tttatatgag acaaaagcat cattttactg tgatcctaag 1740 aggtttttct tgccgatctt tagtgcagat gtgattcaaa gaacttgtga agaaatgttg 1800 tcttggttag actttatgtc ccaacccttg ttggatttgg tatctgattt gctcagacgt 1860 ctcatccttt gcatactatg cactccttcc aagcgtattc aaatttactt acaaggcttt 1920 agatattata ttatggcttt tgtgaatgaa gttcatttta aggaattgtt tgagaaactg 1980 aaagttgtta tgctaacacc ttcagaatgg cagacagcaa tacttattga cgatctcata 2040 ctcctagtac tcaacaattc aagagaggaa gatatggcta aaatctttaa atttgttcta 2100 aatgtatcct acttgtgtca tttcataacc aaggagaccc ctgatagatt gactgatcaa 2160 atcaaatgtt ttgagaagtt cttagaacca aagttaaagt ttgactcagt cctggtcaac 2220 ccctccaaca gtatggagct ccctattgag gaggaagaga aaatggtgca tgacatggag 2280 agactactaa gtaaaaagct ggaatctaaa tgcgaaggga gaccagggat caacaaggat 2340 gtgcttagtg tttgtctatc attgttcaac aatggctcac tcgaagtgaa accctcatct 2400 tcttgcgacc ctatgacccc ctccttcaca agcacagctc tggacatgtc cagcaataaa 2460 agtgtggtgg ttcccaaact tgatgaagtt ggtgaagtta tcactgagta tgactactct 2520 tctattgtct ctgctgttgt tgtggaaata gttgaacatt tcaaaaccaa aggtaagtac 2580 aagctggacc caaaagagat aaacttcaaa attctaaaga ggttatcatc attgattcaa 2640 ataaagaagg agtcagtaga gcctgatgag actgaggagc tgttatcaga agatcagagt 2700 gattgtctta aagagattga gactagagtt tcgaaagtgt tatctaaggt tgacaccaat 2760 gtcaaacccg acttgaagac tccgtgtccg ttggagaggt tgtgccctaa atccacaatg 2820 gtaatcatca aaagggaaac ttcgcttcat gatgtgaaag actttgacta caacttattt 2880 tcagctgaag tgtatgaaga tcttgtgaat ttgatttatg aggatgtcac tgctagatca 2940 atgtactttg cagacagact aatgaatccg tgtcctttgg agtacttgat aaagaacctc 3000 acactgaagg cttataaaga ggctgattat tttgagtgct tcaagtacat ccttattgca 3060 agcgattttg ataatcgagt tggaagatat gatcacaaaa gtagaagcag acttggattc 3120 acagatgcag cactacaaat aagggagaca tcacgcatta gttcaagaga gagcaactct 3180 gaatcgatag ctaaaagatt agatcagagt ttctttacaa actcatcttt acgaaacctt 3240 tgtttctatt cagatgaatc cccaacagag aggtctagtg tgtctactaa tgtggggaga 3300 ttgaaattcg gactttctta caaggagcaa gtaggtggta acagagagct ttatgtcggt 3360 gacttgaaca ccaagctcac aactagactt attgaggatt actctgaatc cctcatgcag 3420 aacatgaggt acacctgcct gaacaatgaa aaggagtttg agagagcatt attagatatg 3480 aaatcagttg tcagacaaag cggccttgca gtgtcaatgg accactcaaa atgggggcca 3540 cacatgtcac cagtcatctt tgccgcatta ttgaagggcc ttgagttcaa tctcaaagat 3600 ggatcagaag ttcctaatgc tgcgattgtc aacatattac tatggcatat ccacaagatg 3660 gtagaagtgc ctttcaatgt tgtagaagca tacatgaagg gcttcttgaa aagagggttg 3720 ggtatgatgg acaaaggagg gtgcacaatt gcagaagaat ttatgtttgg atattttgaa 3780 aagggtaagg tgccatcaca catttcttca gtcctggata tgggtcaagg cattttgcac 3840 aatacctctg atctgtatgg cctaatcact gagcaattca ttaactatgc attggagctc 3900 tgctatggtg tgcggttcat ctcatatact tcaagtgatg atgaaatcat gctgtcctta 3960 aatgaggctt tcaaatttaa agatagagat gagctaaatg ttgacctggt gttagattgt 4020 atggagtttc actacttttt atcagacaaa ctcaacaaat ttgtgagtcc taaaacagtt 4080 gtggggacct ttgcaagtga atttaaatcg agattcttta tttggtctca agaagtcccc 4140 ctccttacaa agtttgttgc tgcggcctta cacaatataa aggctaaagc acctaaccag 4200 caagcagata caattgacac aatattagac caatgtgtcg ccaatggggt gtcaatagag 4260 gttgtggggg ccattgcaaa gcgaactttc agcatgatta tctacagtgg atttccaaat 4320 gatccattct tgtgcctaga agagatggat gtgctagatt gggtcaacgg gtcgagaggg 4380 tacagactcc aacgatcaat tgaatcattg tttcctgatg atttgctact ttcaataatt 4440 aggaaggcat gcaggaagat attttacaaa atacaatctg gagctctgga agaaagttat 4500 attgtaacaa ctcttcagca gtcaccggat gactgtttga aacagttgtt ggagacttgt 4560 gatgttgaga ctgaggctat tgaagatgct ctagacatca gatggttgaa tctaagggtt 4620 catggtgatc tgaggttggt gcttcggacc aagttgatga gcaccacaag aactgtgcaa 4680 cgggaagaaa tacctagtct tgttaaatcc gtacaatcta aattgtcaaa aaattacgtt 4740 agaggagcca agaaaatttt agctgatgct atcaataaat cagctttcca aagtagtgtg 4800 gcatcaggat tcataggagt ctgtaaaagc atgggttcaa gatgcgttag agcgaaaagg 4860 gggattcaaa tacatcagga tcacacaggt aagatcacct tacatcgtga ttgtcaccac 4920 tgtaatcagc gcaagggtgt ttactgtaaa gcagcactta gtgaagtgag tgagtactcc 4980 agacctttaa tctgggatta ttttgcactt gtgctgacca atgcttgtga gctaggcaat 5040 tgggtgtttc aaaaggctga agtgccaaag atagtcactc acttaaataa ccctaatcac 5100 ttctggccaa taaaaccaag tacacattct gaactagaag acaaggtggg catcaaccac 5160 atactgtact caatcaggag aaacttcccc acactgtttg atgaacacat atcccccttc 5220 ttgtctgact taaacatgtt gagactgtca tgggttcaga agataaaatt tttagacctt 5280 tgtgttgcaa ttgacataac atcagagtgt cttggtattg ttagtcacat tataaaacat 5340 cgtagagaag agttgtatat tgtaaagcaa aatgagcttg caatgtctca cagtagggag 5400 tctcacccac tagagaggga ttcaaccttg agccagagag tatgtgcaaa ctttttaata 5460 caaatcttgt tcgagtctat gttggtgcct gtgatcatgt caacgtctca atttaaaaag 5520 tacttttggt tcggcgaagt tgagttatta ccaaacaatg cacaacatga tttgaaacaa 5580 ttaacccaat ttgtatgtga ctgcaaaaag aacaacacct ctagaacaat gaatctagat 5640 gacttggacg ttggctttgt tagcagcaac ctgattttgt cctgtgccaa tttgaatatt 5700 agtgtattca ttaatgaact tgactggatg aatagagatg actatgagaa tatggagcaa 5760 cacatcttag catcaccctc ggaaatcatc cctattgagc tcaacttgac attctcgcat 5820 aaaagggtga gtcacaaatt tagatatgag aggtccacca attacatatt aaaactaaga 5880 tttcttattg aaaggggttc attgctggat tcattagact gtgatggcta tctactgttg 5940 aagcctcatt ctgtcgagta ctatgttctc aatcctctga aatcacataa gcttgatggt 6000 gtgtcacttt tagttttaaa tcctctcatc aacgggaaag atgtgttaga ctttaatgat 6060 ttgttagaag atcaagatgt tcgtttcaag tcaaggtcag ctgtattcca gaaagtaaaa 6120 ctagatatga aagactactt caaggacctg aagaacaagt tttcttataa gttgattggt 6180 cctgatgttg ggatgcaacc tctgattttg gaaaacgggt tgatcaagaa ggaacagagt 6240 gtttctagat tggaagtgaa tttggactca aaggtggtca tcattcgact ggaagcactg 6300 gaacctgaga aaaggtcaaa gttcattgct aacctcttcc aatacctctc aagtgcacag 6360 tctcacaata aggggataat catgactgag caagacctaa ggtacatgat cgagaacttt 6420 cctgaagtct tcgaacatat gttgcatgat gctaaagact ggttgaactg tggtcacttt 6480 agcatagtaa aaagcaaaac actagggacc gtcatgattg cagatgaaaa aggacccttc 6540 aagatcaaag gaatcaggtg tcggaaattg ttcgaagaca atgagtcagt ggagatcgag 6600 tgagcaagca cccatggggg cccccggagg ggggccccca ggccccaggg gccctggttt 6660 atggctcata gggaggtgca gacggactct ccagaaactc catcttggtt ggaagtgagt 6720 gtccgcatat ctcacagaga tggcctctgg agtgcatctt ggttaagcat ccaagacaca 6780 gatagtggtc tttgcacctg ataagaccct tgttgacaaa ccaacaggac ttgcaattaa 6840 atctgccata cagaccctgt ggtaggttga gggtcatagg gacccttccc accacatcct 6900 cgtcgccatg actctccctg acttctttgc tgtatctaag tcccatccta aatcccaacc 6960 aagatttgag ctgggtttaa aattggacaa atttgaa 6997 //