ID AF416900; SV 1; linear; mRNA; STD; VRL; 3038 BP. XX AC AF416900; XX DT 16-JAN-2002 (Rel. 70, Created) DT 15-MAR-2002 (Rel. 71, Last updated, Version 2) XX DE Cucumber mosaic virus 2a protein and 2b protein mRNAs, complete cds. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3038 RX DOI; 10.1128/JVI.76.7.3382-3387.2002. RX PUBMED; 11884564. RA Roossinck M.J.; RT "Evolutionary history of Cucumber mosaic virus deduced by phylogenetic RT analyses"; RL J. Virol. 76(7):3382-3387(2002). XX RN [2] RP 1-3038 RA Roossinck M.J.; RT ; RL Submitted (05-SEP-2001) to the INSDC. RL Plant Biology Division, The Samuel Roberts Noble Foundation, 2510 Sam Noble RL Parkway, Ardmore, OK 73401, USA XX DR MD5; 072dda5829ebb5b41264f99450d7abdf. DR EuropePMC; PMC136033; 11884564. DR EuropePMC; PMC2593348; 18842732. DR EuropePMC; PMC4223077; 25375140. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3038 FT /organism="Cucumber mosaic virus" FT /host="Lactuca saligna" FT /strain="LS" FT /mol_type="mRNA" FT /country="USA: New York" FT /note="pLS2" FT /db_xref="taxon:12305" FT CDS 93..2615 FT /codon_start=1 FT /product="2a protein" FT /note="encodes replicase and RNA-dependent RNA polymerase" FT /db_xref="GOA:Q8V393" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q8V393" FT /protein_id="AAL60176.1" FT /translation="MTSPPPTFSFANLLNGSYGVDTPEEVERVRREQREDAEAALRNYK FT PLPTVDVSESVPRDEPIVSQTVTTAPVTPVVDAFVSFGAEDYLEMSPSELLSAFELMVK FT PLRIGEVLCPNFDRSLFISSVAMARTLLLAPLTSTRTLKRFEDLVAAIYLKTDFFLEDD FT GSQTDVSQSDVPGYTFEPGQHSSGFEPPPICAKCDLILYQCPCFDFNALRESCAEKTFS FT HDYVIEGLDGVIDNATLLSNLGPFLLPVHCSYSKTEDPDFVVDPSLARPTDRVDVHVVQ FT AVCDTTLPTHVNYDDSFHQVFVDSADYSIDMDHVRLRQSDLVAKIPDGGHMLPVLNTGS FT GHKRVGTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAERFRLSYMNVDALAKSNFVN FT VVGNFHAYMQKWQSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVVTDTLNVDRPVPATI FT TFHKKTITSQFSPLFVSLFERFQRCLRERIVLPVGKISSLEMTGFSVLNKHCLEIDLSK FT FDKSQGEFHLMIQEHILNDLGCPAPVTKWWCDFHRFSYIKDKRAGVGMPISFQRRTGDA FT FTYFGNTIVTMAEFAWCYDTDQFDRLLFSGDDSLAFSKLPPVGDPSKFTTLFNMEAKVM FT EPAVPYICSKFLLSDEFGNTFSVPDPLREIQRLGTKKIPYSDNNDFLFAHFMSFVDRLK FT FMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYKELYYSDRQQCDLV FT NTFCISEFQVIRRTTVKKKKNGCVDSSGVDRRPPPSPFAGGETSKTKVSRQKPASEGLQ FT KSQRESAIYSETFPDVTIPRSRSRGLVS" FT CDS 2413..2715 FT /codon_start=1 FT /product="2b protein" FT /note="supressor of post-transcriptional gene silencing" FT /db_xref="InterPro:IPR004946" FT /db_xref="UniProtKB/TrEMBL:Q8V392" FT /protein_id="AAL60177.1" FT /translation="MDVLTVVVSTADLHLAHLQEVKRRRRRSHVRNRRARGYKSPSERA FT RSIARLFQMLPFHGVDPVDWFPDVVRSPSVTSLVSYESFDDTDWFAGNEWAEGSF" XX SQ Sequence 3038 BP; 724 A; 694 C; 682 G; 938 T; 0 other; gtttattctc aagagcgtat ggttcaaccc ctgcctcccc tgtgaaatta ccctagttgt 60 attgatctac ttctagtctc ttttctgtta ctatgacaag tcctccaccc actttctcat 120 tcgccaatct gttgaatggc tcctatggtg ttgacactcc cgaggaagtg gaacgcgtta 180 gacgtgaaca acgcgaagat gctgaggcgg ctttacgtaa ttataagcct ttacccactg 240 tggatgtcag tgagagtgtc cctagagacg aacctattgt ctcgcaaacc gtcactacag 300 ctcctgttac accagtcgtt gacgcgtttg tttcttttgg tgctgaggac taccttgaaa 360 tgtccccatc tgagctgctt tccgctttcg agttgatggt caaacccttg cgtatcggtg 420 aagtgttgtg cccgaatttt gatcgttcgc tattcatctc cagcgtcgct atggctagga 480 cgttgttgtt ggcaccactc acatccaccc gaacgttgaa gcgttttgaa gaccttgtgg 540 ccgcgatcta tctaaaaact gatttttttt tagaagacga tgggtcccag actgatgtct 600 cccaaagcga tgtgcccggt tataccttcg aaccagggca acactcatcc ggttttgaac 660 ccccccctat ttgtgctaaa tgtgacttga ttttgtatca atgtccgtgt ttcgatttta 720 acgcacttcg tgagtcttgc gcagagaaaa cattctctca cgactatgtt atcgagggtc 780 tcgatggtgt cattgataac gctacgctgt tatcaaattt gggaccattt ttgttacctg 840 tccattgttc ttattcaaag accgaggacc ccgatttcgt cgttgatcct agtcttgcgc 900 gacctactga tagggttgat gtacatgtag ttcaagccgt ttgcgatacc actctgccca 960 cccatgttaa ctacgatgat tcctttcatc aagtctttgt ggactctgct gattattcca 1020 ttgacatgga tcacgttcgg ttacgtcaat ccgatttagt agcaaaaatt ccggatggtg 1080 ggcatatgtt accggtgtta aataccggga gtggtcacaa gagagtaggt actacgaagg 1140 aggtcttaac agcaataaag aaaagaaatg ctgatgtccc tgagcttggt gactctgtta 1200 atctgtcacg cctgagcaaa gcagtagccg aacggtttcg tctctcgtat atgaatgttg 1260 acgctttggc taaaagtaac tttgttaatg ttgtcggtaa ttttcacgct tacatgcaaa 1320 aatggcaatc ttctggactt tcttatgatg atcttcctga tcttcacgcg gagaatttac 1380 agttttatga tcacatgatt aagtccgatg ttaagccagt tgtcaccgac acgttgaacg 1440 tcgatagacc tgtcccagct actattacat ttcacaaaaa gaccataaca tcccagttct 1500 caccattgtt tgtatctctg tttgagagat tccagagatg ccttcgggaa cgtattgttc 1560 tgcccgttgg taagatttcc tcccttgaga tgactggttt ttcagtcttg aacaaacatt 1620 gtcttgaaat tgatttatct aaattcgaca aatctcaagg tgagttccac cttatgattc 1680 aagagcacat tctcaacgat cttggttgcc cagcacccgt caccaaatgg tggtgtgact 1740 ttcataggtt ttcctatatt aaagacaaac gtgctggggt tggaatgccc atcagctttc 1800 aacgccgtac tggtgacgct ttcacctatt ttggcaatac tattgtcacg atggctgagt 1860 ttgcttggtg ttatgacact gatcaatttg atcgattgct cttttctggt gatgattctc 1920 tggctttttc taagctccca cctgttggag atcccagtaa gtttacaact ttattcaaca 1980 tggaagctaa ggtgatggaa cctgcagtac cttacatttg ttcgaagttt ctactctctg 2040 atgagtttgg taatacgttt tcagtccccg acccactacg tgaaatccag cggttaggta 2100 ccaagaagat accgtattcg gacaacaacg atttcttgtt tgctcatttt atgagttttg 2160 ttgacaggct gaagtttatg gacaggatgt cgcagtcctg tattgatcaa ttgtccattt 2220 tcttcgagtt gaaatacaag aagtccggga acgaagccgc ccaagttctg ggcgcgttta 2280 agaagtacac cgctaacttt aacgcctata aggagcttta ttactctgac cgtcaacaat 2340 gtgacttggt caatacgttt tgtatatctg agttccaggt gattcgtcgc actaccgtta 2400 agaagaagaa gaatggatgt gttgacagta gtggtgtcga ccgccgacct ccacctagcc 2460 catttgcagg aggtgaaacg tcgaagacga aggtctcacg tcagaaaccg gcgagcgagg 2520 ggttacaaaa gtcccagcga gagagcgcga tctatagcga gacttttcca gatgttacca 2580 ttccacggag tagatcccgt ggattggttt cctgatgtcg ttcgctctcc gtccgttacc 2640 agccttgttt cttatgaatc ttttgatgat actgattggt ttgctggtaa cgaatgggcc 2700 gaagggtcgt tttgatttcc gacccttcgt cgtccgaaga cgttaaacta cactctcttt 2760 attgcgagtg ctgagttggt agtttgcttt aaactatctg aagtcgctaa atccattact 2820 ggttgcgaac gggttgtcca tccagcttac ggctaaaatg gtcagtcatg ccccaaaggc 2880 atgccgacac cctacagggt tgtcgaggta cccttgaaat catctcctag atttcttcgg 2940 aagggcttcg tgagaagctc gtgcacggta atacactgat attaccaaga gtgcgggtat 3000 cgcctgtggt tttccacagg ttctccataa ggagacca 3038 //