ID AF416899; SV 1; linear; mRNA; STD; VRL; 3390 BP. XX AC AF416899; XX DT 16-JAN-2002 (Rel. 70, Created) DT 15-MAR-2002 (Rel. 71, Last updated, Version 2) XX DE Cucumber mosaic virus 1a protein mRNA, complete cds. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3390 RX DOI; 10.1128/JVI.76.7.3382-3387.2002. RX PUBMED; 11884564. RA Roossinck M.J.; RT "Evolutionary history of Cucumber mosaic virus deduced by phylogenetic RT analyses"; RL J. Virol. 76(7):3382-3387(2002). XX RN [2] RP 1-3390 RA Roossinck M.J.; RT ; RL Submitted (05-SEP-2001) to the INSDC. RL Plant Biology Division, The Samuel Roberts Noble Foundation, 2510 Sam Noble RL Parkway, Ardmore, OK 73401, USA XX DR MD5; 19c586180428a7867ad9c6a6bd6402ae. DR EuropePMC; PMC136033; 11884564. DR EuropePMC; PMC2593348; 18842732. DR EuropePMC; PMC3650197; 24426254. DR EuropePMC; PMC4223077; 25375140. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3390 FT /organism="Cucumber mosaic virus" FT /host="Lactuca saligna" FT /strain="LS" FT /mol_type="mRNA" FT /country="USA: New York" FT /note="pLS1" FT /db_xref="taxon:12305" FT CDS 96..3074 FT /codon_start=1 FT /product="1a protein" FT /note="encodes helicase and methyltransferase" FT /db_xref="GOA:Q8V394" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q8V394" FT /protein_id="AAL60175.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGL FT KVYIRNVLDVKDSEVIRTRYGGKYDLHLTQQELAPHGLAGALRLCETLDCLDFFPRSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMSMRKVILNDPQQFDGRQ FT PDFCTKSAAECKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GFIPELKCQWRKIKSAFSEEEDATCLAAKLNSTVFSRVRNGKTLIAFDFVEESTMSYVH FT DWDNIKSFMTDQTYSFNGMTYGIERCVIYAGVMTYKIVGVPGMCPPELIRHCIWFPSMK FT DYVGLKIPASDDLVKWKTVRILLSTLRETEEIAMRCYNDKKNWMDQFKIILGVLSSKSS FT TIVINGMSMQSGERIDLNDYHYIGFAILLHTKLKYEQLGKMYDMWNASFIWKWFASMSR FT PFRVFFSTVVKTLFPTLRPREEKEFLVKLSTFVTFNEECSFDGGKEWDVISSAAFVAAQ FT AVADGTILAEEKAKKLADRLAVPVEEVSAIPEVSPTPVDQGTACGLETETSELDSLSAQ FT TRSPITRIAERATAMLEYSAYEKQLHDTTVSNLQRIWCMAGGDNKRNSLESNLKFVFDT FT YFSVDALVNVHFPTGRWMHPVPEGVVYSVGYNEKGLGPKLDSELYIVNGDCVISNSHDL FT FSITKSLLAPTGTISQVDGVAGCGKTTAIKSMFNPSTDIIVTANKKSAQDVRYALFKST FT DSKEACAFVRTADSILLNDCPTVSRVLVDEVVLLHFGQLCAVMSKLHAVRALCFGDSEQ FT IAFSSRDASFDMRFSKLIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTRTKYSRWV FT SQSKVRKSVTSRAVASVSLVELDPTRFYITMTQADKASLITRAKELNLPKAFYTDRIKT FT VHESQGISEDHVTLVRLKSTKCDLFKKFSYCLVAVTRHKVTFRYEYCGVLGGDLIATCI FT PLV" XX SQ Sequence 3390 BP; 862 A; 740 C; 782 G; 1006 T; 0 other; gttttattta caagagcgta cggttcaacc cctgcctcct ctgtaaaact accctttgaa 60 ttcttcttct cgacttttct tagtttaaaa ttcctatggc aacgtcctca ttcaacatca 120 atgaattggt agcctcccac ggcgataaag gactacttgc gacagccctc gttgacaaga 180 cagctcatga acagctggag gagcaacttc aacatcaacg tagaggcctt aaggtctaca 240 tccgtaatgt tttggatgta aaggactccg aagtcattcg gactcggtat ggtggtaagt 300 acgacctcca tctcacccag caggaattag ctccccatgg cctcgctggt gccctccgct 360 tgtgtgaaac tctcgattgt ctagactttt tccctcgttc aggtctgcgg caggacctcg 420 tcttagactt cggaggaagt tgggtcacac actatcttcg cggacacaac gtacattgct 480 gctccccatg tttgggtatt cgtgacaaga tgcgtcacgc tgaaagattg atgagcatgc 540 gcaaggtcat tttaaacgat ccacaacagt ttgatggccg ccagccggac ttttgcacta 600 agtctgcagc tgaatgcaaa gttcaagccc acttcgctat ttctatacac ggaggatatg 660 atatgggctt tagaggttta tgtgaggcaa tgaacgctca cggaactacg attttgaaag 720 ggacgatgat gttcgacggc gctatgatgt ttgacgacca aggctttatt cctgaactta 780 aatgtcagtg gcgaaaaatt aaatccgcct tttctgagga ggaggatgcc acttgtttag 840 cagctaaact caactctact gttttttcac gcgtgcgaaa tgggaaaacc ttaatcgcat 900 ttgacttcgt tgaggaatcc acgatgtctt atgttcacga ttgggataat ataaaatcgt 960 ttatgacaga tcaaacgtac tctttcaatg gtatgaccta tggaattgag cgttgtgtta 1020 tttacgctgg cgtgatgact tacaagattg ttggcgtgcc tggtatgtgt ccacccgaac 1080 tcattcgaca ttgtatctgg ttcccctcta tgaaggacta tgttggtctt aagattcccg 1140 cgtctgatga cttggttaaa tggaaaacag tccgtatttt actgtcaaca ttacgtgaga 1200 ctgaggaaat agctatgcgt tgttataacg acaagaagaa ttggatggat caattcaaga 1260 ttattctcgg tgttttatca tcgaagtcct ccacgatcgt tatcaatggt atgtctatgc 1320 aatccggtga acgtattgat ctcaacgatt atcattacat cggttttgct atccttctcc 1380 acacgaaact aaaatacgaa caacttggaa aaatgtacga tatgtggaat gcttccttca 1440 tttggaagtg gtttgcgtct atgtctagac cattccgtgt tttcttttcc actgttgtta 1500 agactttgtt tccgactttg agaccgcgcg aggaaaagga gtttttggtc aaactttcca 1560 ccttcgtcac ctttaacgag gagtgctctt ttgacggagg gaaagaatgg gacgtgatat 1620 catcagcggc tttcgtagcc gctcaggctg ttgcagatgg tactattctg gccgaggaga 1680 aagctaagaa attagctgat cgtctggccg tgcctgttga agaagtatct gctattcctg 1740 aggtgtctcc tacacctgtt gatcagggca ctgcttgtgg actggaaaca gaaacatcgg 1800 aactggattc tctgtctgcc caaacacgtt cccccatcac acggatcgct gaaagagcga 1860 ccgctatgct tgaatattca gcttatgaga aacaattgca cgataccacc gtttcaaatc 1920 ttcaacgaat ttggtgcatg gcaggtggcg acaacaagag aaactcttta gagagtaatt 1980 tgaaatttgt gtttgacact tatttttctg ttgacgccct agtgaatgtt cattttccta 2040 ctgggaggtg gatgcaccct gtgcctgagg gcgtggtata ctctgttggt tataatgaga 2100 agggtcttgg tcctaaactt gatagtgagt tgtacatagt taatggtgat tgtgtgattt 2160 cgaacagtca tgatttgttt tcaatcacta aatctttgtt agctcccacc ggaaccatca 2220 gccaagtcga tggtgtagct gggtgcggaa aaaccactgc tataaaatcc atgtttaatc 2280 cttccacaga tataattgtc acagccaaca agaaatctgc tcaagatgtg cgttatgcgc 2340 tgtttaaatc tactgactcc aaagaagctt gtgcttttgt taggaccgct gattccatat 2400 tactcaatga ttgccctacg gtgtctcgag tgcttgtgga tgaagttgtt ttgttgcact 2460 ttggtcagtt gtgcgctgtc atgtcgaaac ttcatgctgt cagagctttg tgtttcggag 2520 actccgaaca gatagctttc tcctctcgtg acgcttcgtt cgacatgcgt ttctctaagc 2580 ttattccgga tgagaccagt gatgcggaca caactttccg tagcccacaa gatgtagtac 2640 cacttgtgcg tttgatggct acgaaggctc taccgaaagg gacccgtacg aaatactcaa 2700 gatgggtgtc ccaatctaaa gtgaggaagt ctgttacttc gcgtgctgtt gctagtgtat 2760 ctctagttga actggacccc accagattct atattacgat gacgcaagct gataaagcct 2820 cactaatcac tagagctaag gaactgaacc tacccaaggc attctacact gataggataa 2880 agactgtcca tgaatctcaa ggtatttcag aagatcatgt gaccctggtt aggttgaaga 2940 gtactaaatg tgacctgttc aagaaatttt catactgctt agttgcagtt actcgacaca 3000 aggtcacctt ccgctatgag tactgtggtg tgttaggtgg ggacctaatc gctacttgta 3060 ttccgttagt ctgaacgcgg aaggtccgaa gacgttaaac tacactctct ttattgcgag 3120 tgctgagttg gtagtttgct ttaaactatc tgaagtcgct aaatccagta ttggttgcga 3180 acgggttgtc catccagctt acggctaaaa tggtcagtca tgccccaaag gcatgccgac 3240 atcttacaag gttgtcgagg tacccttgaa atcatctcct agatttcttc ggaagggctt 3300 cgtgagaagc tcgtgcacgg taatacactg atattaccaa gagtgcgggt atcgcctgtg 3360 gttttccaca ggttctccat aaggagacca 3390 //