ID   AF414287; SV 1; circular; genomic DNA; STD; VRL; 2739 BP.
XX
AC   AF414287;
XX
DT   09-OCT-2001 (Rel. 69, Created)
DT   31-AUG-2025 (Rel. 144, Last updated, Version 13)
XX
DE   Pepper leaf curl virus-[Malaysia] segment A, complete sequence.
XX
KW   .
XX
OS   Pepper leaf curl virus
OC   Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes;
OC   Geplafuvirales; Geminiviridae; Begomovirus; Begomovirus capsici.
XX
RN   [1]
RP   1-2739
RA   Shih S.L., Roff M.M.N., Green S.K.;
RT   ;
RL   Submitted (24-AUG-2001) to the INSDC.
RL   Virology Unit, Asian Vegetable Research and Development Center, P.O. Box
RL   42, Shanhua, Tainan, Taiwan, Republic of China
XX
DR   MD5; 089c70cfeb85931f272b72106c15a84d.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2739
FT                   /organism="Pepper leaf curl virus"
FT                   /segment="DNA-A"
FT                   /host="chilli"
FT                   /mol_type="genomic DNA"
FT                   /geo_loc_name="Malaysia: Klang"
FT                   /note="collected in August 1997 from chilli with leaf curl
FT                   symptoms"
FT                   /db_xref="taxon:83839"
FT   CDS             129..479
FT                   /codon_start=1
FT                   /gene="V2"
FT                   /product="pre-coat protein"
FT                   /protein_id="AAL11515.1"
FT                   /translation="MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDL
FT                   ILVIRARDYVEASRRYSHFHSRLQGASPFELRQPICQPCCCPYCPRHKQKEVMGQPAHE
FT                   QKAQDIQDVQKS"
FT   gene            129..479
FT                   /gene="V2"
FT   CDS             289..1062
FT                   /codon_start=1
FT                   /gene="V1"
FT                   /product="coat protein"
FT                   /protein_id="AAL11516.1"
FT                   /translation="MSKRPADIVISTPASKVRRRLNFDSPYVSRAAAPTVLVTNKRRSW
FT                   ANRPMNRKPRIYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTH
FT                   RVGKRFCIKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNE
FT                   PSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDN
FT                   HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
FT   gene            289..1062
FT                   /gene="V1"
FT   CDS             complement(1059..1463)
FT                   /codon_start=1
FT                   /gene="C3"
FT                   /product="C3 protein"
FT                   /protein_id="AAL11517.1"
FT                   /translation="MDSRTGEHITAAQAENGVYIWTVNNPLYFKITQHHERPFLRNHDI
FT                   ITVQIQFNYNLRKALELHQCFLICQIWTRLHPQTSRFLRVFKYQCIKYLDYLGVISINN
FT                   VIRAIRHVLYNVLEGTIDAGLSEIIKFNIY"
FT   gene            complement(1059..1463)
FT                   /gene="C3"
FT   CDS             complement(1204..1608)
FT                   /codon_start=1
FT                   /gene="C2"
FT                   /product="C2 protein"
FT                   /protein_id="AAL11518.1"
FT                   /translation="MQSSSPSEPHSTQVPIKVRHRIAKRTTRRRRVDLPCGCSYFVALS
FT                   CHNHGFTHRGTHHCSSSREWRIYLDGQQSPIFQNHTTPREAIPEEPRHNHSADPVQLQP
FT                   EESVGTTSMLSNLPNLDSFTSSDLAFLKSI"
FT   gene            complement(1204..1608)
FT                   /gene="C2"
FT   CDS             complement(1526..2596)
FT                   /codon_start=1
FT                   /gene="C1"
FT                   /product="replication-associated protein"
FT                   /protein_id="AAL11519.1"
FT                   /translation="MAPPKKFRINAKNYFLTYPHCSLTKEEALSQIQAIETPTNKLFIR
FT                   ICRELHEDGTPHLHILIQFEGKFQCKNPRFFDLTSPTRSAHFHPNIQGAKSSTDVREYI
FT                   AKNGDVLDHGVFQIDGRSARGGCQSANDAYAEALNSGSKASALTILKERAPKDYILQFH
FT                   NLNSNLDKIFSPRIEMYISPFCSSSFDQVPEELNEWVAANVVSAAARPLRPISIVVEGD
FT                   SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNEAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT                   QSNTKYGKPVQIKGGIPTIFLCNPGPHSSYKEFLEEEKNTALKNWAVKNAIFVTLRAPL
FT                   YSGSYQGSTQNRQEDN"
FT   gene            complement(1526..2596)
FT                   /gene="C1"
FT   CDS             complement(2146..2439)
FT                   /codon_start=1
FT                   /gene="C4"
FT                   /product="C4 protein"
FT                   /protein_id="AAL11520.1"
FT                   /translation="MGLLTCISSSNSKVNSNAKIHDSSTSHPQPGQHISIRTFRELKAQ
FT                   QMSGNISQRTETFLIMGFSRSMEDRLEGAANLPTTHMPRHSIQDPKLRHSQY"
FT   gene            complement(2146..2439)
FT                   /gene="C4"
XX
SQ   Sequence 2739 BP; 737 A; 564 C; 609 G; 829 T; 0 other;
     accggatggc cgcgattttt tttcaagtgg tccccccacg tgcgctggac caatcataac        60
     catccctcaa agcttagtta tgaggtggta tcctataaaa cgtggtcccc aagtacttac       120
     atcaaaacat gtgggatcct ttactaaacg agtttcctga aaccgtacat ggttttaggt       180
     gtatgttagc aattaagtat ttgcaactag tagaaaatac atactctccc gatacattag       240
     gctacgacct aatacgtgat ctcatcttgg ttattcgtgc tagggattat gtcgaagcgt       300
     cccgcagata tagtcatttc cactcccgcc tccaaggtgc gtcgccgttt gaacttcgac       360
     agcccatatg tcagccgtgc tgctgcccct actgtcctcg tcacaaacaa aaggaggtca       420
     tgggccaacc ggcccatgaa cagaaagccc aggatataca ggatgtacaa aagtcctgat       480
     gttcctcggg gctgtgaagg cccatgtaag gtccagtcct atgaacaacg tcatgatgta       540
     gcccatgtag ggaaggtaat ttgtgtctcc gatgtcactc gaggtaatgg gctgacacat       600
     cgtgttggta agaggttctg tattaagtct gtgtacgtat tggggaaaat ttggatggat       660
     gagaatatca agaccaagaa ccacactaat actgtcatgt tctttttagt tcgtgatagg       720
     agaccatttg gtactccaca ggactttggt caggtgttca acatgtatga taatgagccc       780
     agtactgcga cggtgaagaa cgataacaga gatcgatttc aagtccttcg tcgtttccag       840
     gcaactgtga caggtggtca atatgcaagc aaggagcaag ccatagttag gaaattcatg       900
     aaggtgaata atcatgtgac ttacaaccat caagaagctg caaagtatga caatcacaca       960
     gagaatgctc ttttattgta tatggcatgt acgcatgcca gtaatccagt gtatgcaact      1020
     ttgaagatca gaatctactt ctatgactct gtacaaaatt aataaatatt gaattttatt      1080
     atttctgaaa gaccagcatc aattgtgccc tccaatacat tgtacaatac atgtctaatc      1140
     gccctaatta cattgtttat actaatcact cctaaataat ctaaatactt gatacattga      1200
     tatttaaata ctcttaagaa acgcgaggtc tgaggatgta aacgagtcca aatttggcag      1260
     attagaaagc attgatgtag ttccaacgct ttcctcaggt tgtagttgaa ctggatctgc      1320
     actgtgatta tgtcgtggtt cctcaggaat ggcctctcgt ggtgttgtgt gattttgaaa      1380
     tataggggat tgttgaccgt ccagatatat acgccattct ctgcttgagc tgcagtgatg      1440
     tgttcccctg tgcgtgaatc catggttatg acagcttaga gcgacgaaat acgaacaccc      1500
     acaagggaga tcaactcgtc ttcgtctagt tgtcctcttg gcgattctgt gtcgaacctt      1560
     gataggaacc tgagtagagt ggggctctga gggtgacgaa gattgcattc tttacagccc      1620
     aattcttaag tgcggtgttc ttttcttcct ccaagaactc tttataactt gaatgtggtc      1680
     ctggattgca gaggaagata gtgggaattc cgcctttaat ttgaactggc tttccgtatt      1740
     tcgtgttgct ttgccagtct ctttgggccc ccatgaattc tttaaaatgc tttaggtaat      1800
     gcggatctac gtcatcaatg acgttatacc aagcctcgtt gttgtacact tttgggctta      1860
     agtctaaatg accacataaa tagttatgtg gtcctaacga cctggcccac attgtcttcc      1920
     ccgtcctgct atcaccctct accactatac ttatcggtct taatggccgc gcagcggcgc      1980
     tgacaacgtt tgcagcaacc cattcattaa gttcctctgg aacttggtca aaagaagaag      2040
     aacaaaaagg agaaatgtac atttctattc gaggactaaa aatcttatct aaattactat      2100
     ttaaattatg aaattgtaaa atataatctt ttggggccct ttccttcaat attgtgagtg      2160
     ccgaagcttt ggatcctgaa ttgagtgcct cggcatatgc gtcgttggca gattggcagc      2220
     cccctcgagc cgatcttcca tcgatctgga aaaccccatg atcaagaacg tctccgttct      2280
     ttgcgatata ttccctgaca tctgttgagc ttttagctcc ctgaatgttc ggatggaaat      2340
     gtgctgacct ggttggggat gtgaggtcga agaatcgtgg atttttgcat tggaatttac      2400
     cttcgaattg gatgaggata tgcaagtgag gagtcccatc ttcgtgcaat tccctgcaaa      2460
     tcctgataaa gagtttattt gtaggggttt cgatggcttg gatttgggaa agtgcttctt      2520
     ctttagtgag agagcaatgt gggtatgtga ggaaatagtt ttttgcattt attctaaatt      2580
     ttttaggagg agccattgac cggtcaatcg gtgtctctca actctgtcta tgtaattggt      2640
     gtctggggtc ttatttatat ggagacccca atggcataat ggtaattatg aaaaagtaac      2700
     tttaattcaa atacccaaag cggccatccg tataatatt                             2739
//