ID AF406744; SV 1; linear; genomic RNA; STD; VRL; 7560 BP. XX AC AF406744; XX DT 05-SEP-2001 (Rel. 69, Created) DT 21-NOV-2002 (Rel. 73, Last updated, Version 2) XX DE Indian citrus ringspot virus, complete genome. XX KW . XX OS Indian citrus ringspot virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Mandarivirus. XX RN [1] RP 1-7560 RX DOI; 10.1007/s007050070064. RX PUBMED; 11043949. RA Rustici G., Accotto G.P., Noris E., Masenga V., Luisoni E., Milne R.G.; RT "Indian citrus ringspot virus: a proposed new species with some affinities RT to potex-, carla-, fovea- and allexiviruses"; RL Arch. Virol. 145(9):1895-1908(2000). XX RN [2] RP 1-7560 RX DOI; 10.1007/s00705-002-0875-6. RX PUBMED; 12417955. RA Rustici G., Milne R.G., Accotto G.P.; RT "Nucleotide sequence, genome organisation and phylogenetic analysis of RT Indian citrus ringspot virus. Brief report"; RL Arch. Virol. 147(11):2215-2224(2002). XX RN [3] RP 1-7560 RA Accotto G.P., Rustici G.; RT ; RL Submitted (06-AUG-2001) to the INSDC. RL Istituto di Fitovirologia Applicata, Consiglio Nazionale delle Ricerche, RL Strada delle Cacce, 73, Torino 10135, Italy XX DR MD5; 1979fe1158af954c0d38ae5f34bbe962. DR EuropePMC; PMC3486449; 23087111. XX FH Key Location/Qualifiers FH FT source 1..7560 FT /organism="Indian citrus ringspot virus" FT /host="Kinnow mandarin" FT /isolate="K1" FT /mol_type="genomic RNA" FT /db_xref="taxon:104664" FT CDS 79..5055 FT /codon_start=1 FT /product="putative RNA-dependent RNA polymerase RdRp" FT /note="encodes methyltransferase, helicase and GDD domains FT typical of replicases of several RNA viruses" FT /db_xref="GOA:Q918W3" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/Swiss-Prot:Q918W3" FT /protein_id="AAK97522.1" FT /translation="MATIRGAIDRITDTTVRTTLQEEACRQIRTELKNVEHVNRYAIPP FT DAADALEHLGIGTNPFSVKLHTHGACKAIENQLLYVVGTLLPKERVTMLFLKKAKLNFM FT KRCPKFQDIFLNQHIEPRDVSRYCDFNVQSTSTSIPTHTAYISDTLHFMDRKDLVRLFI FT NSPNLDTLYATIVLPVEAAYRQPSRYPDLYQINYDFDGFQYIPGGHGGGAYHHEFSHLE FT WLDVGHIHWRGPDNKDIQLTITAQMIESLGANHLFCFRRGNLRTPRVRTFGRDTQVLLP FT KIFRPVDKNFNRAIPLTLANKMLLYAKSINTVTFRDVVAKTRQLMKDKELETYTGADLL FT HMANYFFVVGALSGVNSYDQMLGLSAWEACTMALKNTVTNLWERITGKREFGKLLEALE FT WETLTYSRQVTQKYVGGTPARLPLPDITDQEEIFAQQEALDALTSGATKITTHHLMSAA FT ARRSTEGPTMPTPAAQVPPTQNPKHTIDEVASRALVTKLQKNKRVYIQDDGPEYIMGHM FT AEVPAWYLEQDETTTRLRNRCAWFFGPPTHRYGHNDIEYHTTEYYPWVERIGNIFGKFN FT TCLAQTHDQGARIGYHADDEDCYDKDVTVATVNLTGNATFSLKTATGTRTWKLKPGDFI FT VLKPGAQGCTKHAISDCTTNRTSLTFRWQARPCPSQLRRVVNLGNVNNPKRKSKAQQWT FT PKTSNSDSPRLTQTPNSPTPKDVPVVSPKLADATAPTIRAVPENGAHTNMACVELTDLP FT ETTTTHRPGKEPINDLTDSEPETESEQTENLVLNRFIQDLPTTSTHAWASETDSICSFQ FT AEALGPSSVEALPWHEHLELINSLGFTGLERQYGPDNNLIWPITHYRTLPKSRTIEAPT FT DLVELLDTIDRHPTDVPYSKTRASAFGSDVKNLRIGALVKNQDKQWRASLALLCEENEH FT VLPTTVIHGAGGSGKSHLLQQWVSSTERGNVVVILPTIELLRDWLNKCPTTPKDSFKTF FT EKALVQNSAPVVIMDDYSKLPPGYIEAYVALKGQCKLLVLTGDPRQSHYHEENPEALIS FT TLDPATDYFSKYCTYNINATHRNATTFANALGVYSERKLPVSVTCSSYQKSGWPTLVPS FT ILKKTALNDMGQRSLTYAGCQGLTTPKVQIVLDNATPLCSEQVMYTALSRAVDQIHFFN FT TGPNHSDYWEKMNATPFLKTFIDHTREENLKEHQPAEPTVREHTPATHFPPANEALALE FT PWVEPLTDKHSRELHHKALGHSNCVQTDNPVVQLFPHQQAKDETLFWKTIDARIKITTP FT EENVRNFNMASDIGDILFLNYKEAMCLPADPIPFQQSLWDSCQAEVQQTYLSKPLAALA FT NAAQRQDPDFDSNKIQLFLKSQWVKKVEKLGCLKIKPGQTIASFMQQTVMLYGTMARYM FT RRIRISLCPSHIMINCETNPTQISSWVRENWDFSGQSHENDFEAFDQSQDANMLQFELI FT KAKFHSIPEEIIAGYKHLKCHAHIFLGTIAIMRLSGEGPTFDANTECSIAYNHTRYFVP FT KGCAQLYAGDDSACAAPLSEKPSFQHISPELSLKSKAKIRSQTKGDYATFCGWLITPKG FT FIKNPTQLYASWLLAKHNKDLQDVARNYALDLRIAYQLKDELYELLSPEELDHHQLLVR FT EMVKHKMGHLLNLPEGFKQT" FT CDS 5063..5740 FT /codon_start=1 FT /product="25 kDa triple gene block protein" FT /db_xref="GOA:Q918W2" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/Swiss-Prot:Q918W2" FT /protein_id="AAK97523.1" FT /translation="MDFAELLESKAFTRTRLPLSKPIVVHAVAGAGKTSLLENYARINP FT AARIYTPIAQQSNSLLLSPFTQSLEQADIVDEYPLSTLHPGVEYVLADPIQYLGSKDLL FT KPHYICPTTHRFGHSTAEFLTSLGIETYAHKPDRLTIANIFKTEPHGQVIACDLDTQQL FT AARHSLDYLRPCQSIGKTFKDTTILISHELNRDTLTKEIYIALTRHTNSVTILTPDAPS FT TSS" FT CDS 5718..6047 FT /codon_start=1 FT /product="12 kDa triple gene block protein" FT /db_xref="GOA:Q918W1" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/Swiss-Prot:Q918W1" FT /protein_id="AAK97524.1" FT /translation="MPLQPPPDHTWAVRIIALGLAVTALIFTSTRDTSRHVGDPSHSLP FT FGGHYRDGSKVIHYNSPRSSKPSNHTPYLLFAPIGIILLIHALHRLGNSAHICRCTHCM FT PHSQT" FT CDS 5974..6156 FT /codon_start=1 FT /product="6.4 kDa triple gene block protein" FT /db_xref="GOA:Q918W0" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/Swiss-Prot:Q918W0" FT /protein_id="AAK97525.1" FT /translation="MHYIDWVILLTFAAALIVCLTPKPEPCIITVSGASATVSNCPNPE FT LLTDLVKALKPAKPV" FT CDS 6179..7156 FT /codon_start=1 FT /product="capsid protein CP" FT /db_xref="GOA:Q9QEE7" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/Swiss-Prot:Q9QEE7" FT /protein_id="AAK97526.1" FT /translation="MSFDYTDPTFRNYPFPHYCDFDRHQHCDHDLRTNPPPTEPPSRKS FT KLMSTSENKGKQPLHPPPTEGFPKPPPPPSSTPTTPTPPDQTKAPEPIEKRIIHAFHAE FT PKTHTNGEAPPAFNPNNMNAVPLNLLNINLKYSPVTNSIANPKQTEAIGKAWVRILQID FT PANVFLYAIDLARACADAGSSPEADIIGANEDLNPVVERNALAGVVRDFCPLRAFCAYY FT SRVVWNLMIKADQPPANWMKSGIDEGAKFAAFDFFHGVLSPASLYVPLERHPTAAERIA FT NQAMFAVKIANAPGNGSELTMDHVAFTKGRITADSKPRPTPFNT" FT CDS 6856..7524 FT /codon_start=1 FT /product="putative 23 kDa nucleic acid binding protein" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/Swiss-Prot:Q9QEE6" FT /protein_id="AAK97527.1" FT /translation="MEPHDQSGSTTRQLDEIRDRRGSQIRSVRLLPWRPFTRFPVCPSG FT TSPYSRGTHSQPSYVRCQNCERARQWFRAHDGPRCLHQRPDYSRLQAPPDPFQHLNSFE FT PILLAALSVLRPLPRDIQITIISCACDYFHSVRCASSRYLGSSRSAVKRRAARLNYCYK FT CGHPLYLNKPHTCRPGRLCSASISERLALLREGPIRSLTENPINARAAHFLAHELLDPR FT " XX SQ Sequence 7560 BP; 2114 A; 2444 C; 1484 G; 1518 T; 0 other; gaaaagcaaa cataaccata cacactcaaa atattgacta ttctctccgc atcaacagca 60 cagctgagaa ccggggacat ggccactatt aggggtgcca tcgatcgtat cacagacacc 120 accgtacgca cgacactaca ggaggaggct tgcagacaaa tccgtaccga acttaagaac 180 gtagaacatg ttaacaggta cgccatcccg ccagatgccg cagacgccct agaacatctt 240 ggcattggca ccaacccctt ctcggtcaaa ttgcatacac acggtgcctg taaagcgatc 300 gaaaaccagc tactctacgt agttggtact ttgctaccaa aagaaagagt caccatgctc 360 ttccttaaga aagctaagct caacttcatg aagagatgcc cgaagttcca agacatcttc 420 ctaaatcagc acatagaacc tagggacgtc tcaagatact gcgatttcaa cgtgcaatcc 480 acatccacta gcattcctac ccatacggca tacatcagcg atacactaca tttcatggat 540 aggaaggact tagtaaggct cttcatcaac agtcctaact tagacaccct ctatgccacc 600 atcgtactac ccgtggaggc cgcataccgc caaccgagtc ggtatcccga cctatatcaa 660 atcaactatg acttcgacgg tttccagtac atccctggtg gccatggggg tggtgcctac 720 caccacgaat tcagccacct cgagtggttg gacgtaggcc acatacactg gcgtggacca 780 gacaataagg acattcaact cacaataacc gcgcagatga ttgaaagcct tggggcaaat 840 cacctgtttt gcttccggag aggcaactta cgcacaccca gagttaggac cttcggccga 900 gacacacaag ttctgctccc taaaatattc cgcccggtcg acaaaaactt caatagagcc 960 ataccactca ctctggctaa taaaatgcta ctttacgcca aatcaatcaa cacggtcaca 1020 ttccgtgatg ttgtagcaaa aacccgccag ctcatgaaag ataaggagct ggagacatac 1080 accggcgccg acctacttca tatggctaac tacttcttcg tcgtcggcgc cctatctgga 1140 gtcaactctt acgaccaaat gctggggctc tcagcatggg aagcatgcac catggccctc 1200 aaaaacacgg ttaccaacct ctgggagcgc atcactggaa aaagagagtt cggaaagctt 1260 ctcgaggcac tcgagtggga gaccctcacc tactctcgcc aagtaaccca gaaatacgta 1320 ggtggcacgc ccgcacgact tccactgccc gacatcactg atcaagaaga gattttcgct 1380 caacaggagg ccctagacgc actcacgtca ggcgcgacta agatcaccac acaccacttg 1440 atgagtgcgg cagcccgacg cagcaccgag ggccccacaa tgcccacccc agccgcccaa 1500 gttcccccta ctcaaaatcc aaaacacacc atcgatgagg tggcatcacg cgctctcgta 1560 acaaaactac aaaagaacaa gcgcgtctac atacaagatg acggtccaga gtatatcatg 1620 ggccacatgg ctgaagtacc tgcctggtac ctagaacaag atgaaaccac tacgagacta 1680 cgcaaccgtt gcgcctggtt cttcggacca cccacccacc ggtatggaca taatgacatt 1740 gagtaccaca caacagaata ctacccgtgg gtggaacgca tcggcaacat atttggaaag 1800 ttcaacacat gcctcgcgca aactcatgac cagggcgccc ggataggcta ccacgctgac 1860 gacgaagatt gctatgacaa agacgtaacc gtggccacag tgaaccttac aggtaatgcc 1920 accttttctc tcaagacagc tacaggcacc cgtacatgga aattgaagcc gggcgatttt 1980 atcgttctca aacctggcgc tcaagggtgc accaaacatg ccatcagtga ctgcacaacc 2040 aaccgcactt ccttaacatt cagatggcaa gctcgaccat gtccgagcca gctacgccga 2100 gtggtcaacc ttggaaatgt caacaacccc aagaggaaat ctaaagcgca acaatggacc 2160 ccaaaaacca gcaactcaga tagcccaaga ctgactcaga ccccaaatag cccaacaccc 2220 aaggatgtgc cggtcgtaag cccaaaactc gctgacgcta ccgcaccgac gattagggcc 2280 gtgcccgaaa acggtgccca caccaacatg gcgtgtgtag agcttacgga cctgcccgaa 2340 accaccacta cccatcgccc gggcaaagag ccaattaatg acctcacaga ctcagaaccc 2400 gagactgagt ccgaacaaac tgaaaacctt gtgctcaacc gcttcataca ggacttgccc 2460 accacctcca ctcacgcgtg ggcctctgaa accgactcca tctgcagctt ccaggccgag 2520 gctcttggtc catcttctgt cgaagcccta ccatggcatg aacatctcga gttaataaac 2580 tctctaggct tcactggtct tgaacgccaa tacggcccag acaacaatct catctggccc 2640 attacccact accgcacact cccaaaatcc agaaccattg aggcacccac tgacctggtt 2700 gaactcctcg acaccattga ccgacatccc accgacgtcc cttactccaa gacgcgagcg 2760 tcagctttcg gctctgacgt taagaacctt cgtatcggag cgttggtcaa gaaccaggat 2820 aaacaatgga gggcgtctct cgcactcctc tgtgaggaaa acgaacacgt cctgcccacc 2880 actgtcatac acggcgcagg tggttctgga aaatcccacc tcctccaaca atgggtctcc 2940 tccactgaac gcggcaacgt cgtcgtcatt cttccgacga ttgaactact tcgagattgg 3000 ctcaacaagt gccccactac accgaaagac agctttaaga ccttcgaaaa agctcttgtg 3060 caaaacagtg cccccgtagt cataatggac gactactcca aattgccgcc tggctatatc 3120 gaagcttacg tagcactcaa gggccaatgc aagctgctcg tcctcaccgg agacccacgc 3180 caaagccact atcatgaaga aaacccagaa gctctcattt cgaccctaga ccctgcaacc 3240 gattacttct ccaaatactg cacctacaat atcaacgcca cacaccgaaa cgccaccacc 3300 ttcgcaaacg ccctcggcgt ttactctgag agaaagttgc cagtgtcggt aacttgttcg 3360 tcttatcaga agagcgggtg gcccacactc gtcccatcaa tcctcaagaa aaccgcactc 3420 aatgatatgg gacaacgctc cttgacctat gccggctgtc agggcctcac aactcccaag 3480 gttcaaattg tactggacaa cgccactcca ctctgctctg agcaggtgat gtacaccgct 3540 ctctctcgtg ccgtcgacca gatacacttc tttaacacag gcccaaacca ctcagactat 3600 tgggaaaaga tgaacgccac ccctttcctc aagaccttca tagaccacac ccgcgaagag 3660 aacctcaaag aacaccagcc cgcagagccc accgtcagag aacacacccc cgccacacac 3720 tttccaccag ccaacgaagc tctagcactt gaaccctggg ttgaacccct cacagacaaa 3780 cactcacgag aattgcacca caaggcgctg ggtcacagca actgcgtgca aaccgataac 3840 ccagtggtac aactcttccc ccaccaacaa gccaaggacg aaaccctctt ctggaaaact 3900 atcgacgctc gaatcaaaat cacgacaccg gaagagaacg tccgtaactt caacatggcc 3960 tccgacatcg gagacattct tttcctgaac tacaaggaag ccatgtgctt acctgccgac 4020 cccatcccct tccaacagtc tctttgggac agttgccagg ctgaggtgca acagacttac 4080 ctcagcaaac ctcttgcagc acttgccaac gctgcccagc ggcaagatcc agacttcgac 4140 tccaacaaga ttcaattatt cctaaagtct caatgggtca agaaggtgga aaaacttggc 4200 tgcctcaaga ttaagccagg acagaccatc gcctcattca tgcaacaaac ggtcatgctc 4260 tatggcacta tggcgcgata catgcgcagg atccgtatct ctctttgtcc ctcacacatc 4320 atgataaact gcgagaccaa ccctacccaa ataagctctt gggtacgaga gaattgggac 4380 ttttccggac aaagccacga gaacgacttt gaggcttttg accaatcaca ggacgcgaac 4440 atgctgcaat tcgagctgat caaggcaaaa ttccactcca ttcctgagga gatcatcgct 4500 ggatacaaac acctaaaatg ccatgcacac atctttctag gcaccatcgc tatcatgcgc 4560 ctgtccggag agggccccac tttcgacgca aacactgagt gctccatcgc ttataaccac 4620 accaggtact tcgtccctaa gggttgtgct caactttacg ctggcgacga ctcggcctgt 4680 gctgctccac tctctgaaaa acccagcttc caacacatct cacctgagct gagcttgaaa 4740 tcaaaagcta aaatccgaag ccagactaaa ggagactatg ccactttctg tggttggcta 4800 atcactccca aaggtttcat caagaaccca actcagctct atgcctcctg gctactggcc 4860 aaacacaaca aagatctaca ggacgttgcg cgcaactacg cccttgacct ccggatagca 4920 taccaactca aagacgaact ttacgagctg ctatcccccg aggagctaga tcaccaccaa 4980 ctcttagtcc gcgagatggt caaacacaaa atgggacacc tcttaaacct ccctgagggg 5040 tttaaacaaa cctaatctcg acatggactt tgccgagctc ctcgaatcca aagctttcac 5100 tcgcacccga ttgcccctct ccaaacccat tgtcgtgcat gctgtggccg gcgccggtaa 5160 gacctcactc ttagagaatt acgccagaat caaccctgcc gcccgaattt acactccaat 5220 tgcccaacaa tcgaattcac tactactctc tcccttcaca cagtcccttg aacaagcaga 5280 cattgtagac gagtacccgc tcagcaccct tcatcctgga gtagagtacg tcctcgcaga 5340 tcctatccaa tacttaggtt ccaaagacct cctgaagccg cattacatct gccccaccac 5400 acatcgcttc ggtcattcca cagcagaatt cctaacctcc ttgggcatcg aaacatacgc 5460 gcacaaaccc gaccgtctca caattgccaa catcttcaag acggaacccc acggccaggt 5520 cattgcctgc gatttagaca cacagcaact tgccgcgcga cactcccttg actatctacg 5580 cccttgccag agtatcggca aaaccttcaa agacaccaca atcctgatct cacacgaact 5640 gaacagagat actctgacaa aagagatcta cattgcccta accagacaca ccaacagcgt 5700 aaccattctt acgcccgatg ccccttcaac ctcctcctga ccatacctgg gccgttcgta 5760 ttatagcatt gggactcgct gttactgccc tcatcttcac atccacaagg gacacatcta 5820 gacacgtagg agacccatca cattctctac ctttcggcgg ccattatcgc gacgggagca 5880 aagtaatcca ctacaactca ccccgatcca gcaaaccttc aaatcacact ccatacctgt 5940 tgtttgctcc gattggcatc atattactaa ttcatgcact acatcgactg ggtaattctg 6000 ctcacatttg ccgctgcact cattgtatgc ctcactccca aacctgagcc gtgcataatc 6060 actgtgtccg gagcatcagc gaccgtctcc aactgcccaa atcccgagct cttaacagac 6120 ttagtcaagg cactcaagcc cgccaaaccg gtttaataaa ctaaaccaca ccgaactcat 6180 gagctttgac tacacagacc caaccttccg taattacccc ttcccgcact actgtgattt 6240 cgaccgccac caacactgcg atcacgacct acgaaccaat ccacctccaa ccgagccacc 6300 atcccgaaaa tccaaactca tgtctaccag tgagaacaaa ggcaaacagc cgcttcaccc 6360 gcctcccacc gaaggctttc caaaacctcc accaccaccg tcgagcactc cgactactcc 6420 tacaccgccc gaccagacga aggctcctga acccattgag aaaagaatca tccacgcctt 6480 ccacgctgaa cctaaaaccc acaccaatgg agaagccccc ccggcattca atcccaataa 6540 catgaacgct gtgccactca acctactcaa catcaacctg aagtattcac cagtcaccaa 6600 ctccattgcg aacccgaaac agacagaagc tattggcaaa gcctgggtcc gtatcctgca 6660 aattgacccg gcgaacgtat tcctctacgc catcgacctc gcccgagcct gcgctgacgc 6720 tggaagctca cccgaagccg acattatcgg cgcgaacgaa gacctcaatc cagtggtcga 6780 gcgaaacgcc ctagctggtg ttgtccgaga cttctgccca ctgcgcgcct tttgcgctta 6840 ctactccagg gtggtatgga acctcatgat caaagcggat caaccacccg ccaactggat 6900 gaaatcaggg atagacgagg gagccaaatt cgcagcgttc gacttcttcc atggcgtcct 6960 ttcacccgct tccctgtatg tccctctgga acgtcaccct acagccgcgg aacgcatagc 7020 caaccaagct atgttcgctg tcaaaattgc gaacgcgccc ggcaatggtt cagagctcac 7080 gatggaccac gttgccttca ccaaaggccg gattacagca gactccaagc cccgcccgac 7140 ccctttcaac acttaaacag cttcgaaccc atactcctgg ccgccctgag tgttctacgg 7200 ccattacccc gagatatcca aattaccata atatcgtgtg cgtgtgacta tttccattct 7260 gtacgctgtg ccagtagtcg gtacttaggc tcaagccgtt ccgccgtcaa aaggcgggct 7320 gccaggctca attactgcta caagtgtggg caccctctct acttaaataa acctcacacc 7380 tgccgcccag gtcgtctttg ctccgcgtca atttctgaac gcttggctct actccgcgag 7440 ggaccgatta ggtcattgac cgaaaatccc atcaacgcta gagctgcgca cttcttggcg 7500 cacgagctcc tcgaccctag atgaaactta aatattcagg ctttcagttt ccattttctg 7560 //