ID   AF401606; SV 1; linear; genomic RNA; STD; VRL; 1056 BP.
XX
AC   AF401606;
XX
DT   27-AUG-2001 (Rel. 68, Created)
DT   26-MAY-2002 (Rel. 71, Last updated, Version 2)
XX
DE   Potato virus Y N 27 polyprotein gene, P1 protease region, partial cds.
XX
KW   .
XX
OS   Potato virus Y
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1056
RX   DOI; 10.1016/S0166-0934(02)00023-X.
RX   PUBMED; 12008009.
RA   Nie X., Singh R.P.;
RT   "Probable geographical grouping of PVY(N) and PVY(NTN) based on sequence
RT   variation in P1 and 5'-UTR of PVY genome and methods for differentiating
RT   North American PVY(NTN)";
RL   J. Virol. Methods 103(2):145-156(2002).
XX
RN   [2]
RP   1-1056
RA   Nie X., Singh R.P.;
RT   ;
RL   Submitted (24-JUL-2001) to the INSDC.
RL   Potato Research Centre, Agriculture and Agri-Food Canada, P.O. Box 20280,
RL   850 Lincoln Road, Fredericton, New Brunswick E3B 4Z7, Canada
XX
DR   MD5; fa47bc0ef48ea53696f3731f5b48a88d.
DR   EuropePMC; PMC2704195; 19419565.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1056
FT                   /organism="Potato virus Y"
FT                   /strain="N"
FT                   /isolate="N 27"
FT                   /mol_type="genomic RNA"
FT                   /note="from North America"
FT                   /db_xref="taxon:12216"
FT   CDS             154..>1056
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q91HT6"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q91HT6"
FT                   /protein_id="AAK95177.1"
FT                   /translation="MATYMSTIQFGSIECKLPYSPAPFELVAREREVSTITDPFAGLEM
FT                   QLSARLRRQEFATVRTSKSGTCMYRYKTDVQIAHIQKKREEREREEHNFQMAAPSVVSK
FT                   ITIAGGEPPSKLESQVQRGVIHTTPRMRTVKTYHTPKLPEKQMNHLIKQVKQIMSTKGG
FT                   SVQLISKKSTRVQYKEVLGAHRAVVCTAHMRGLRKRVDFQCDKWTVMCLKHLARTDKWT
FT                   NQVRATDLRKGDSGVILSNTNLKGYFGRSSEGLFIVRGSHEGKIYDARSKVTQGVLDSM
FT                   VQFSNAESFWKGLDGNWAQM"
FT   mat_peptide     154..978
FT                   /product="P1 protease"
XX
SQ   Sequence 1056 BP; 334 A; 220 C; 242 G; 260 T; 0 other;
     cgcaaaaaca ctcacaaaag ctttcaattc taactcaagc aatttgttaa gtttcaactt        60
     tgatctccgt cgtacaaacc gtttcaactt cagtgtaagt tctcgtaact caatagttta       120
     tttcaaactc tctcaaatag taacatacca gccatggcaa cttacatgtc aacgattcaa       180
     ttcggttcca ttgaatgcaa acttccatac tcacccgccc cttttgagct agttgcgagg       240
     gaacgagaag tttcaaccat cactgacccc ttcgcaggtt tggagatgca gcttagtgcg       300
     cgactacgaa ggcaagagtt tgcgactgtc cgtacatcca agagtggtac ctgcatgtat       360
     cgatacaaga ctgatgtcca gattgcgcac atccaaaaga agcgcgagga aagagaaaga       420
     gaagaacaca acttccaaat ggctgcaccg agtgttgtgt cgaagattac tattgctggt       480
     ggagagccac cttcgaaact tgaatcacaa gtgcagaggg gtgtcatcca cacaactcca       540
     agaatgcgta cagtgaaaac atatcacacg ccaaagttgc cagagaaaca aatgaaccat       600
     cttatcaagc aggtaaagca aatcatgtca actaaaggag ggtctgttca actgattagc       660
     aagaaaagta cccgtgttca atataaagaa gttttgggag cacatcgcgc agtcgtttgc       720
     actgcacata tgagaggttt acgaaagaga gtagactttc agtgtgataa gtggactgtt       780
     atgtgtctga agcatctcgc aaggacggac aagtggacta accaagttcg tgctactgat       840
     ctacgaaagg gcgatagtgg agttatattg agtaatacta atctcaaagg atactttggg       900
     agaagttcgg agggtctatt tatagtgcgt ggatcgcatg aaggaaaaat ctatgatgcg       960
     cgttccaagg ttacacaagg agttctagac tcaatggttc agttctcaaa cgctgaaagc      1020
     ttctggaagg gattggacgg caattgggca caaatg                                1056
//