ID   AF401605; SV 1; linear; genomic RNA; STD; VRL; 1054 BP.
XX
AC   AF401605;
XX
DT   27-AUG-2001 (Rel. 68, Created)
DT   26-MAY-2002 (Rel. 71, Last updated, Version 2)
XX
DE   Potato virus Y N 5Yt polyprotein gene, P1 protease region, partial cds.
XX
KW   .
XX
OS   Potato virus Y
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1054
RX   DOI; 10.1016/S0166-0934(02)00023-X.
RX   PUBMED; 12008009.
RA   Nie X., Singh R.P.;
RT   "Probable geographical grouping of PVY(N) and PVY(NTN) based on sequence
RT   variation in P1 and 5'-UTR of PVY genome and methods for differentiating
RT   North American PVY(NTN)";
RL   J. Virol. Methods 103(2):145-156(2002).
XX
RN   [2]
RP   1-1054
RA   Nie X., Singh R.P.;
RT   ;
RL   Submitted (24-JUL-2001) to the INSDC.
RL   Potato Research Centre, Agriculture and Agri-Food Canada, P.O. Box 20280,
RL   850 Lincoln Road, Fredericton, New Brunswick E3B 4Z7, Canada
XX
DR   MD5; 7b57185622077edbb215ff81177ef5da.
DR   EuropePMC; PMC2704195; 19419565.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1054
FT                   /organism="Potato virus Y"
FT                   /strain="N"
FT                   /isolate="N 5Yt"
FT                   /mol_type="genomic RNA"
FT                   /note="from North American tobacco"
FT                   /db_xref="taxon:12216"
FT   CDS             152..>1054
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q91HT7"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q91HT7"
FT                   /protein_id="AAK95176.1"
FT                   /translation="MATYTSTIQIGSIECKLPYSPAPFGLVAREREVSTTTDPFAGLEM
FT                   QLSARLRRQEFATVRTSKSGTCMYRYKTDAQIARIQKKREEREREEHNFQMAASSVVSK
FT                   ITIAGGEPPSKFESQVQRGVIHTTPRMRTVKTYHVPKVTEKQMNHLIKQVKQIMSTKGG
FT                   SVQLISKKSTHVQYKEVLGARRAVVCTAHMRGLRKRVDFQCDKWTAVCLKHLARTDKWT
FT                   NQVRATDLRKGDSGAILSNTNLKGYFGRSSEGLFIVRGSHEGKIYDARSKVTQGVLDSM
FT                   VQFSNAESFWNGLDGNWAQM"
FT   mat_peptide     152..976
FT                   /product="P1 protease"
XX
SQ   Sequence 1054 BP; 323 A; 217 C; 252 G; 262 T; 0 other;
     cgcaaaaaca ctcacaaaag ctttcaactc taactcaagc actttgttaa gtttcaactt        60
     tgatcttcgt cgtacaaacc ttttcaactt cagtgtaagt tatcgtaact caataagtta       120
     tttcaagttc ttaaatagta acatatcagc catggcaact tatacgtcaa cgatccagat       180
     tggttccatt gaatgcaaac ttccatattc acccgcccct tttgggctag ttgcgaggga       240
     acgagaagtt tcaaccacca ctgacccctt cgcgggtttg gagatgcagc ttagtgcgcg       300
     actacgacgg caagagtttg caaccgttcg tacgtccaag agtggtactt gcatgtatcg       360
     atataagact gatgcccaga ttgcgcgcat tcaaaagaag cgcgaggaaa gagaaagaga       420
     agaacacaac ttccaaatgg ctgcatcaag tgttgtgtcg aagattacta ttgctggtgg       480
     agagccacct tcgaagtttg aatcacaagt gcagaggggt gttatccaca caactccaag       540
     aatgcgtaca gtgaaaacat accacgtgcc aaaggtgaca gagaaacaaa tgaaccatct       600
     tatcaagcag gtaaagcaaa ttatgtcaac taaaggaggg tctgttcaac tgattagcaa       660
     gaaaagtacc catgttcagt ataaagaagt tttgggagca cgtcgcgcag tcgtttgcac       720
     tgcacatatg agaggtttgc gaaagagagt agactttcag tgtgacaagt ggactgctgt       780
     gtgtctgaag catctcgcca ggacggataa gtggactaac caagttcgtg ctactgatct       840
     acgaaagggc gatagtggag ccatattgag taatactaat ctcaaaggat actttgggag       900
     aagttcggag ggtctattta tagtgcgtgg atcgcacgaa ggaaaaatct atgacgcgcg       960
     ttccaaggtt actcaagggg ttctagactc aatggttcag ttctcaaacg ctgagagctt      1020
     ctggaatgga ctggacggca attgggcaca aatg                                  1054
//