ID   AF401603; SV 1; linear; genomic RNA; STD; VRL; 1056 BP.
XX
AC   AF401603;
XX
DT   27-AUG-2001 (Rel. 68, Created)
DT   26-MAY-2002 (Rel. 71, Last updated, Version 2)
XX
DE   Potato virus Y Sl 50 polyprotein gene, P1 protease region, partial cds.
XX
KW   .
XX
OS   Potato virus Y
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1056
RX   DOI; 10.1016/S0166-0934(02)00023-X.
RX   PUBMED; 12008009.
RA   Nie X., Singh R.P.;
RT   "Probable geographical grouping of PVY(N) and PVY(NTN) based on sequence
RT   variation in P1 and 5'-UTR of PVY genome and methods for differentiating
RT   North American PVY(NTN)";
RL   J. Virol. Methods 103(2):145-156(2002).
XX
RN   [2]
RP   1-1056
RA   Nie X., Singh R.P.;
RT   ;
RL   Submitted (24-JUL-2001) to the INSDC.
RL   Potato Research Centre, Agriculture and Agri-Food Canada, P.O. Box 20280,
RL   850 Lincoln Road, Fredericton, New Brunswick E3B 4Z7, Canada
XX
DR   MD5; b06ae42914776c4ec95f1299464bfad1.
DR   EuropePMC; PMC2704195; 19419565.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1056
FT                   /organism="Potato virus Y"
FT                   /strain="NTN"
FT                   /isolate="Sl 50"
FT                   /mol_type="genomic RNA"
FT                   /country="Slovenia"
FT                   /db_xref="taxon:12216"
FT   CDS             154..>1056
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q91HT9"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q91HT9"
FT                   /protein_id="AAK95174.1"
FT                   /translation="MATYTSTIQFGSIECKLPYSPAPFGLVAGKREVSTTTDPFASLEM
FT                   QLSARLRRQEFATIRTSKNGTCMYRYKTDVQIARIQKKREEREREEYNFQMAASSVVSK
FT                   ITIAGGEPPSKLESQVRRGVIHTTPRMRTAKTYHTPKLTEGQMNHLIKQVKQIMSTKGG
FT                   SVQLISKKSTHVHYKEVLGSHRAVVCTAHMRGLRKRVDFRCDKWTVVRLQHLARTDKWT
FT                   NQVRATDLRKGDSGVILSNTNLKGNFGRSWEGLFIARGSHEGKIYDARSKVTQGVMDSM
FT                   VQFSSAESFWKGLDGNWAQM"
FT   mat_peptide     154..978
FT                   /product="P1 protease"
XX
SQ   Sequence 1056 BP; 332 A; 218 C; 246 G; 260 T; 0 other;
     cgcaaaaaca ctcacaaaag ctttcaactc taattcaaac aatttgttaa gtttcaattt        60
     cgatcttcat caaacaaact ctttcaattt cagtgtaagc tatcgtaatt cagtaagtta       120
     tttcaaactc tcgtaaattg cagaagacca tccatggcaa cttacacatc aacaatccag       180
     tttggttcca ttgaatgcaa acttccatac tcacccgctc cttttgggct agttgcgggg       240
     aaacgagaag tttcaaccac cactgacccc ttcgcaagtt tggagatgca gcttagtgcg       300
     cgattacgaa ggcaagagtt tgcaactatt cgaacatcca agaatggtac ttgcatgtat       360
     cgatacaaga ctgatgtcca gattgcgcgc attcaaaaga agcgcgagga gagagaaaga       420
     gaggaatata atttccaaat ggctgcgtca agtgttgtgt cgaagatcac tattgctggt       480
     ggagagccac cttcaaaact tgaatcacaa gtgcggaggg gtgtcatcca cacaactcca       540
     aggatgcgca cagcaaaaac atatcacacg ccaaagttga cagagggaca aatgaaccac       600
     cttatcaagc aggtgaagca aattatgtca accaaaggag ggtctgttca actgattagc       660
     aagaaaagta cccatgttca ctataaagaa gttttgggat cacatcgcgc agttgtttgc       720
     actgcacata tgagaggttt acgaaagaga gtggactttc ggtgtgataa gtggaccgtt       780
     gtgcgtctac agcatctcgc caggacggac aagtggacta accaagttcg tgctactgat       840
     ctacgcaagg gcgatagtgg agttatattg agtaatacta atctcaaagg aaactttgga       900
     agaagctggg agggcctatt catagcgcgt gggtcgcacg aaggaaaaat ctatgatgca       960
     cgttccaagg ttactcaagg ggttatggat tcaatggttc agttctcaag cgctgaaagc      1020
     ttttggaagg gattggacgg caattgggca caaatg                                1056
//