ID AF395898; SV 3; linear; genomic RNA; STD; VRL; 6485 BP. XX AC AF395898; AF395899; AF400156-AF400157; AY497578; XX DT 24-OCT-2002 (Rel. 73, Created) DT 16-DEC-2013 (Rel. 119, Last updated, Version 5) XX DE Hibiscus latent Singapore virus, complete genome. XX KW . XX OS Hibiscus latent Singapore virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6485 RX DOI; 10.1007/s00705-002-0829-z. RX PUBMED; 12181677. RA Srinivasan K.G., Narendrakumar R., Wong S.M.; RT "Hibiscus virus S is a new subgroup II tobamovirus: evidence from its RT unique coat protein and movement protein sequences"; RL Arch. Virol. 147(8):1585-1598(2002). XX RN [2] RP 1-6485 RX DOI; 10.1007/s00705-004-0404-x. RX PUBMED; 15654508. RA Srinivasan K.G., Min B.E., Ryu K.H., Adkins S., Wong S.M.; RT "Determination of complete nucleotide sequence of Hibiscus latent Singapore RT virus: evidence for the presence of an internal poly(A) tract"; RL Arch. Virol. 150(1):153-166(2005). XX RN [3] RP 1-6485 RA Niu S., Wen Y., Wong S.-M.; RT "An infectious RNA with a hepta-adenosine stretch responsible for RT programmed -1 ribosomal frameshift derived from a full-length cDNA clone of RT Hibiscus latent Singapore virus"; RL Virology 0:0(2013). XX RN [4] RP 1-6485 RA Srinivasan K.G., Narendrakumar R., Wong S.M.; RT ; RL Submitted (28-JUN-2001) to the INSDC. RL Biological Sciences, National University of Singapore, Block S2, Science RL Drive 4 117543, Singapore XX RN [5] RP 1-6485 RA Srinivasan K.G., Low L.H., Wong S.M.; RT ; RL Submitted (15-JUL-2001) to the INSDC. RL Biological Sciences, National University of Singapore, Block S2, Science RL Drive 4 117543, Singapore XX RN [6] RP 1-6485 RA Niu S., Wen Y., Wong S.M.; RT ; RL Submitted (09-DEC-2003) to the INSDC. RL Biological Sciences, National University of Singapore, Block S2, Science RL Drive 4 117543, Singapore XX RN [7] RC Sequence update by submitter RP 1-6485 RA Srinivasan K.G., Wong S.M.; RT ; RL Submitted (23-AUG-2006) to the INSDC. RL Biological Sciences, National University of Singapore, Block S2, Science RL Drive 4 117543, Singapore XX RN [8] RC Sequence update by submitter RP 1-6485 RA Srinivasan K.G., Wong S.M.; RT ; RL Submitted (11-DEC-2013) to the INSDC. RL Biological Sciences, National University of Singapore, Block S2, Science RL Drive 4 117543, Singapore XX DR MD5; fef1e9f20bc4e08fc64e9b78ac2ec075. DR EuropePMC; PMC5282660; 28137291. DR EuropePMC; PMC5814506; 29449391. XX CC On Dec 11, 2013 this sequence version replaced gi:113145526. XX FH Key Location/Qualifiers FH FT source 1..6485 FT /organism="Hibiscus latent Singapore virus" FT /host="Hibiscus" FT /isolate="Singapore" FT /mol_type="genomic RNA" FT /collection_date="08-Aug-2001" FT /db_xref="taxon:185955" FT 5'UTR 1..58 FT CDS 59..4978 FT /codon_start=1 FT /transl_except=(pos:3461..3463,aa:Gln) FT /product="RNA-dependent RNA polymerase" FT /note="viral replication; 185 kDa" FT /db_xref="GOA:Q5K6D3" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q5K6D3" FT /protein_id="AAQ03050.2" FT /translation="MTTDIKQQITNVRDDACQGASSLIKGLATRRVYDEAVQTLTVLDK FT RPKFTFSNMVTADQAKLVTEAYPEFNISYVGNRNAVHSLAGGLRKLEMEYLMTLVPYGS FT PTYDIGGNYAQHLLKGRSYVHCCNPCLDFRDIARNENYKETLDSYLKRFTTPDCGWFSA FT ACRKVTARPLPYFQQDAFERYRQNPKDVTCSEPFQDCCMQPPSNQDCFAISVHSLYDIP FT VDELGAALLRKNVKTLYAALHFSEELLMGATEARLGTIGAKFFREGDEVTFGFDGESTL FT LYTHSFKNICAYITRSFFYAGARFAYMKEFLVRRVDTVYCKFIKIDTQCLYKSVFHTDI FT DNENMIKGMDEAFMYKREAALLNAARPIFKDKAAFRVWFPNSVGKVIIPFFKGSSCTSA FT KVKVKKRLVDEDFVFTVLNHIRTYSGKQLSYENVLSFVESIRSRVVANGANVRSEWDIP FT KSEIQDIAMSLFLITRLRTLQDSNVLQQFSVKGKSLTDLVKEALGGLVGSMFEPLTQVC FT IDRGWFKLAEHTLKVEVPELSQTFESYMQTEFSESKAIEALDVWSYLDESNQLYTHVSK FT LMEKYTMPDFDVEKFRELCALLKVGPNVISTVIEAVLDNSLGFTIVGGKPEHQYSDEMK FT AAVAVSSEYGKGKEYGNIAAAASTYTPEGPLKKEWVKKNAVQMPLQATTEKVQRFHLSE FT ESEHINVENLHMVNTSVFTKAKACLLYTGTLKEQQMKNYLDYLSASICATISNIEKVLH FT DYWTTGTQQYQSYGLWDVKKKKWVLCPPTAGHAWGVAAIKGKHHIVMLNFDGNDQPICD FT KEWDLVCVSNDTKLFSTMKILENLQGCKIQEPKAKITLVDGVPGCGKTAEILSKADFKR FT DLIITQGKQAAAMIRKRANANDPTRPANNDNVRTVDSFLMNPKPFEYKVLWIDEGLMLH FT TGAISFCVALSHCEQCYVFGDTQQIPFINRVMNFDYPKTLQTLVTDSVEKRRITSRCPL FT DVTCYLAQRYKGPVVSTNNVERSLDTKLVAGAARFEPQLTPLPGKVITFTQADKETLKK FT RGYQDVHTVHEVQGETYTEVSLVRLTPTPLSIISPDSPHVLVSLSRHKNRLVYYTVVND FT CITYAIGELAKLNNFMFDMYTVENQKAQQLQQHRLYIHKNIFCPTPKTGTISDLQEYYD FT RCLPGNSFVLNDYDRVCMRLVDNTFNVEPCTLTLSKADPVEAEMRLNSKNFLTPLLRTA FT VEKPRVPGLLENLVALIKRNFNSPDLAGIIDTKQVATNVVDKFFSDYFTVEGLDHINRC FT RNNKFLYSKENLSVWYDKQQPQSIGQLANADFIDFPSVDEYKHMIKTQPKGKLDCSIQS FT EYPALQTIVYHSKHVNAIFGPIFSEFTRIILESIDTNKFFFYTRKTVEDLELFFSDLSD FT SSDMDVLELDISKYDKSQNDFHFCVEMLIWERLGIDNFVKSIWETGHKKTTLKDYQAGI FT KTIIYHQRKSGDVTTFIGNTLIIAACVSSLLPVKSVIKGAFCGDDSVLYFPKGVDLTDV FT QANANLMWNFEAKLFRKKYGYFCGKYIIHHSNGCIVYPDPLKLIQKLGNKSLTSREHAE FT EFRISLCDVSKSLGNCAYFDLLDKAIAEVFKGAGGGSYAFRSYWKHITNPGLFKTLYDE FT S" FT CDS 59..3463 FT /codon_start=1 FT /product="replicase" FT /note="methyltransferase; helicase; 128 kDa" FT /db_xref="GOA:Q5K6D2" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q5K6D2" FT /protein_id="AAQ03051.2" FT /translation="MTTDIKQQITNVRDDACQGASSLIKGLATRRVYDEAVQTLTVLDK FT RPKFTFSNMVTADQAKLVTEAYPEFNISYVGNRNAVHSLAGGLRKLEMEYLMTLVPYGS FT PTYDIGGNYAQHLLKGRSYVHCCNPCLDFRDIARNENYKETLDSYLKRFTTPDCGWFSA FT ACRKVTARPLPYFQQDAFERYRQNPKDVTCSEPFQDCCMQPPSNQDCFAISVHSLYDIP FT VDELGAALLRKNVKTLYAALHFSEELLMGATEARLGTIGAKFFREGDEVTFGFDGESTL FT LYTHSFKNICAYITRSFFYAGARFAYMKEFLVRRVDTVYCKFIKIDTQCLYKSVFHTDI FT DNENMIKGMDEAFMYKREAALLNAARPIFKDKAAFRVWFPNSVGKVIIPFFKGSSCTSA FT KVKVKKRLVDEDFVFTVLNHIRTYSGKQLSYENVLSFVESIRSRVVANGANVRSEWDIP FT KSEIQDIAMSLFLITRLRTLQDSNVLQQFSVKGKSLTDLVKEALGGLVGSMFEPLTQVC FT IDRGWFKLAEHTLKVEVPELSQTFESYMQTEFSESKAIEALDVWSYLDESNQLYTHVSK FT LMEKYTMPDFDVEKFRELCALLKVGPNVISTVIEAVLDNSLGFTIVGGKPEHQYSDEMK FT AAVAVSSEYGKGKEYGNIAAAASTYTPEGPLKKEWVKKNAVQMPLQATTEKVQRFHLSE FT ESEHINVENLHMVNTSVFTKAKACLLYTGTLKEQQMKNYLDYLSASICATISNIEKVLH FT DYWTTGTQQYQSYGLWDVKKKKWVLCPPTAGHAWGVAAIKGKHHIVMLNFDGNDQPICD FT KEWDLVCVSNDTKLFSTMKILENLQGCKIQEPKAKITLVDGVPGCGKTAEILSKADFKR FT DLIITQGKQAAAMIRKRANANDPTRPANNDNVRTVDSFLMNPKPFEYKVLWIDEGLMLH FT TGAISFCVALSHCEQCYVFGDTQQIPFINRVMNFDYPKTLQTLVTDSVEKRRITSRCPL FT DVTCYLAQRYKGPVVSTNNVERSLDTKLVAGAARFEPQLTPLPGKVITFTQADKETLKK FT RGYQDVHTVHEVQGETYTEVSLVRLTPTPLSIISPDSPHVLVSLSRHKNRLVYYTVVND FT CITYAIGELAKLNNFMFDMYTVENQKA" FT CDS 4968..5816 FT /codon_start=1 FT /product="movement protein" FT /note="cell-to-cell movement" FT /db_xref="GOA:Q8BE67" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q8BE67" FT /protein_id="AAN51975.2" FT /translation="MSLNLADPMKLLDESTVFKTNILDRFRGGMKKNLKACNVVDCDVA FT KLSGNGQSLFSVNLTSNLTLEQKSYKYVHLLAIVISGKWHLHNTVGGGATVALLDKRIT FT NPQQAQLAKMVVAAKVGEFQGRLTPNYSVTLEDALKDPWEVFISIKDVPIEQGFHPLSV FT EIAALLMFSDICILKSLRAKMIESQIGFTDGTDGDIPSENMDAFVQSASIMQDLRRLRM FT ANNSLGSGVIGGRDKKGKKFVKDFKKKTVVSDNSDTDFSGAESSYTTEFDSRSETSYAL FT P" FT CDS 5803..6294 FT /codon_start=1 FT /product="coat protein" FT /note="encapsidation" FT /db_xref="GOA:Q8BE68" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="PDB:3PDM" FT /db_xref="UniProtKB/TrEMBL:Q8BE68" FT /protein_id="AAN51974.2" FT /translation="MPYLNLTPLNLIYTSGTFAPYDVFLEILVKSRSNSFQTQAGRDTL FT REQLINSLQIVANLNTRYPLLGFYVWVRNPTLAPVFEALLRATDTKNRIIEVEEESRPT FT TAETLNATQRVDDATVAIHKEIDNILLLLQGGTAVYDRTAFEVVSGLSWADPTTTSTTT FT " FT 3'UTR 6295..6485 XX SQ Sequence 6485 BP; 1972 A; 1216 C; 1490 G; 1807 T; 0 other; gtatgttttt agtttgaaca tttcaacaac attcaactac gaaacagcaa caacaaatat 60 gactacagac attaaacaac aaatcacaaa cgtacgcgac gacgcatgcc aaggggcatc 120 gtcgttaatt aaaggtttgg ccacccgtcg tgtgtacgat gaggcggtac aaaccttaac 180 agtgttggac aaaaggccga aattcacctt ttctaatatg gttacagccg atcaggcgaa 240 acttgtcact gaggcttacc ccgagtttaa tataagctat gtgggcaata ggaacgccgt 300 ccattcactg gccggaggat tgaggaagtt ggaaatggaa tatttgatga cactcgttcc 360 ttacggttct cctacctatg acataggagg aaattatgcg cagcaccttt tgaaaggacg 420 atcatatgtt cactgctgca atccttgttt ggatttcaga gatatagcca gaaacgagaa 480 ttacaaggag actttggatt catatctgaa gcggttcact acgccagatt gcggttggtt 540 ctccgcggcg tgcagaaagg ttactgcaag acctttgcct tattttcaac aggatgcatt 600 cgaacggtat agacaaaatc cgaaagacgt cacctgttca gaaccctttc aggattgttg 660 tatgcaaccc cctagtaatc aggattgttt tgcaatttct gtgcattcac tctatgacat 720 tcctgtcgat gaattgggcg cggcactctt aaggaagaac gtaaaaactc tttacgccgc 780 actccatttc tccgaggagc ttttaatggg cgcaactgaa gcgcgactgg gcacgattgg 840 tgcaaaattt ttccgggagg gtgacgaggt cacattcggt ttcgatggtg aatccaccct 900 tctttacacg cactccttta aaaatatttg tgcttatatt actaggagtt ttttttatgc 960 aggagctaga tttgcttaca tgaaagaatt tttagtacgc cgtgtagata ctgtctattg 1020 taaatttatt aagatagaca cgcagtgttt atataagtcc gtattccata ctgatatcga 1080 taacgaaaat atgataaaag gtatggatga ggccttcatg tacaaacgag aagccgcgtt 1140 gttgaacgca gcaagaccta tttttaagga taaggccgct tttcgtgtgt ggtttcccaa 1200 ttctgtagga aaagtgatta tccctttttt taaaggtagt tcatgtacat ccgccaaggt 1260 aaaggtgaaa aaaagactgg ttgatgaaga ctttgtcttc actgtgctaa atcacatccg 1320 cacctattcc ggcaagcaac tgtcatatga aaatgtttta tcgtttgtcg agtccatccg 1380 atcgagggtg gtagctaacg gtgctaacgt gcggtcagag tgggatatcc caaagtctga 1440 gatccaagat atcgccatgt cattgttttt gatcacacgg ttaagaactc tgcaggacag 1500 taatgttctt cagcagtttt cggtcaaggg caagagtctg acagatctcg tgaaggaggc 1560 cctagggggt cttgtcggtt cgatgtttga accactgact caagtttgta tagaccgggg 1620 ttggtttaag ttagcagagc acactttaaa agtggaggtg ccagagcttt ctcaaacctt 1680 cgagagttat atgcaaacgg agtttagtga gtcgaaagca atcgaagcac tggacgtctg 1740 gagctatctg gatgagagca atcagcttta cacccatgtc tcaaaattga tggagaagta 1800 tacaatgcct gattttgatg tggaaaaatt cagggagctc tgcgcgctac taaaggtggg 1860 accgaacgtt atatcaacgg tcattgaagc agttcttgat aattcactag gcttcacaat 1920 tgttggtggg aaacccgagc atcaatattc tgatgagatg aaggccgctg tcgccgtaag 1980 ttctgagtac ggaaaaggga aagaatatgg caacatcgcc gctgcggcta gcacctacac 2040 acctgaaggc ccgcttaaaa aggagtgggt taaaaaaaac gctgtgcaaa tgcctctaca 2100 ggctacaacg gagaaggttc aacgctttca tttgagcgag gagagcgagc atattaacgt 2160 ggaaaatctg cacatggtca acaccagcgt gttcaccaag gcaaaagctt gcttactcta 2220 cacaggcacg ttaaaagagc agcagatgaa gaattactta gattatctct cagcatctat 2280 ctgcgccact ataagcaaca tcgaaaaagt cctacatgat tactggacaa ctggtactca 2340 acagtatcag tcctacggtc tgtgggatgt gaagaaaaag aaatgggtgt tgtgtccacc 2400 cacggcaggt catgcatggg gggtcgcggc tatcaaaggc aagcatcaca ttgtgatgct 2460 caactttgac ggtaatgatc aacctatctg tgataaggag tgggatttag tttgtgtcag 2520 caatgataca aaactatttt ccactatgaa aattttggaa aacctgcagg gttgcaagat 2580 acaggaaccg aaggcaaaga taacattagt ggatggggtt ccgggatgtg gaaaaactgc 2640 cgaaatcttg agtaaggcag atttcaagcg tgatctgatt atcacgcaag gaaaacaggc 2700 agccgctatg ataagaaaaa gggcaaacgc caatgatcct acgagaccag caaacaacga 2760 taacgtgaga acggtggatt cgtttttaat gaatccgaaa ccatttgaat acaaagtctt 2820 gtggatcgat gaagggttaa tgctgcacac tggtgcaatc agtttttgcg tcgcactgag 2880 ccattgtgaa cagtgctacg tttttggaga tacgcagcaa attcccttta ttaacagagt 2940 catgaatttt gattatccga agaccttgca aacgctggtc acggattctg tagagaaacg 3000 gcggattaca tcgcggtgtc cgctagatgt gacctgttat ctggcgcaga ggtataaggg 3060 acccgtggtg tcaacgaaca atgttgagag gtcccttgac acaaagctcg tggctggtgc 3120 cgctcgcttt gaacctcagc ttacaccatt accgggcaag gtaataactt ttacccaggc 3180 tgataaagag acacttaaaa aacgcggata tcaagatgtg catactgtgc acgaggtgca 3240 aggtgagacc tatactgagg tgtcgttagt gcgtctcacg ccaacacccc tgagcattat 3300 ttcgcctgac tctcctcatg tattagttag tttatctaga cataaaaata ggttagttta 3360 ttataccgta gttaatgact gtattactta tgctataggt gagttagcta agttaaataa 3420 ttttatgttt gatatgtata ctgtggagaa tcagaaagca tagcaattac agcagcatcg 3480 cctctacatc cacaaaaaca tcttttgtcc tactcctaaa accggaacca tttctgactt 3540 acaggagtat tacgataggt gtttacctgg gaatagcttc gtccttaatg attacgatcg 3600 agtgtgtatg agactcgttg acaacacgtt caacgttgaa ccatgcacac tgactttaag 3660 taaagctgac cctgtggagg cagagatgcg attaaatagc aagaattttt tgactccatt 3720 gttgcggact gctgtggaaa aacccagggt gcctgggttg ttggagaatc tcgttgcttt 3780 aattaagagg aattttaatt cccctgattt ggctgggata atcgacacca agcaggttgc 3840 aactaatgta gtcgataaat tcttttctga ttactttacc gtagaaggtt tagatcatat 3900 aaatagatgt agaaataata agtttttgta tagtaaagag aacctttctg tatggtacga 3960 taaacagcag ccgcagtcca ttgggcagtt ggctaatgct gatttcatag atttccctag 4020 tgttgatgag tacaagcata tgatcaagac tcaacccaag ggaaaacttg actgcagcat 4080 tcaatctgaa tatcctgccc tacagactat agtgtatcat agtaaacatg taaatgctat 4140 ttttggtcct atttttagtg aatttactag aataatttta gaatccatag atactaacaa 4200 atttttcttt tatactagga aaactgtaga ggacttggag ttgtttttca gcgatctttc 4260 tgattcaagc gacatggatg tcctggagct tgatataagc aaatatgata aatcgcaaaa 4320 cgatttccac ttctgtgtgg aaatgctgat ttgggaacgt ctcggtatag acaattttgt 4380 caaaagtatt tgggagacgg gccataagaa aacaactctg aaagattatc aggctggtat 4440 aaaaactata atttaccacc agaggaaaag cggtgacgta actacgttca tcggtaacac 4500 cttaatcatc gctgcatgcg tcagctctct attgccggtt aaatcggtaa ttaaaggcgc 4560 gttttgcggt gatgattcgg tattatactt tccgaagggg gtagatttaa ccgatgtaca 4620 agccaatgct aatcttatgt ggaatttcga ggcaaaactc tttaggaaaa aatacggcta 4680 tttctgtggt aaatacatta ttcaccactc taatggttgt atagtctacc cggatccact 4740 gaagctgata cagaaactag gtaacaaatc tttaacttct agggaacacg ccgaggaatt 4800 tagaatatca ctttgtgatg tttcgaagtc ccttggcaat tgcgcatatt ttgatttgct 4860 ggataaggcc attgctgaag tgtttaaagg agcaggtggc ggttcgtacg ctttcagatc 4920 ttattggaaa catataacca accccggcct ttttaaaacc ctttacgatg agtcttaatc 4980 tggctgaccc aatgaagtta ttagatgagt cgactgtgtt taaaactaac attttagata 5040 ggtttagggg tggaatgaaa aagaacttga aggcctgcaa cgtcgtcgat tgcgacgtgg 5100 ctaagctttc aggtaatggt cagtcactat ttagtgttaa ccttacttct aatttaactt 5160 tagaacaaaa atcgtataaa tatgtacatt tgttagctat agtaatttct ggtaaatggc 5220 atctgcataa cacggttggt ggtggtgcga ctgtagcttt gttagataag cgtataacaa 5280 atccacaaca agctcagttg gcaaagatgg ttgtggctgc gaaggtaggg gagtttcagg 5340 gtaggcttac gccaaattac tctgttactc tggaggatgc tctcaaagac ccgtgggaag 5400 tcttcataag cattaaggat gtgccgatag aacaaggttt tcatcctttg tcagttgaga 5460 ttgcagcatt actaatgttt tcagacattt gtatactaaa gtctctgcgg gcaaagatga 5520 tagaatcaca aatcggtttt actgatggaa ccgacggcga cataccttct gagaatatgg 5580 atgcatttgt acagagtgct tctataatgc aagatttgag aagactcagg atggccaata 5640 attctcttgg aagtggtgta attgggggta gagataagaa agggaaaaag tttgtaaagg 5700 attttaagaa gaaaactgtg gttagtgata attccgatac tgatttttca ggagcggaga 5760 gttcgtatac tacagaattc gactcaagat cagaaacaag ctatgcctta ccttaatttg 5820 acacctttga atttaatata tactagtggt acttttgctc cttatgatgt atttctggag 5880 atattggtaa agtcgcgatc aaatagtttt caaacccaag cagggcgcga tactctgaga 5940 gagcaactta ttaattcttt acagatagta gctaatttga atactcgtta tccattatta 6000 gggttttatg tatgggttag aaatcccaca cttgcgcctg tattcgaagc tcttcttcgt 6060 gcaacggaca caaagaacag aatcatcgag gtggaggagg agtctcgtcc taccacggcg 6120 gagactttga atgcaacgca gcgtgtggat gatgctaccg tagcaattca taaagaaata 6180 gataatatat tactattatt acagggtggt actgcagttt atgataggac ggcgttcgag 6240 gtcgtttcag gtttatcctg ggctgatcct acaacaacgt ctactacaac gtaaaaaaaa 6300 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 6360 aaaaaaaaaa aaaaaaaaag agatgagtcg aggtatcggg tcgtcgatgg cgggtgccgc 6420 ctagacaatg gctcattgct ttccgaggga ggttcgaatc ccccctaacc ccgggttggg 6480 gccca 6485 //