ID AF394608; SV 1; linear; genomic RNA; STD; VRL; 5998 BP. XX AC AF394608; XX DT 02-JUL-2002 (Rel. 72, Created) DT 26-FEB-2005 (Rel. 83, Last updated, Version 3) XX DE Bean pod mottle virus strain K-Hopkins1 segment RNA-1, complete sequence. XX KW . XX OS Bean pod mottle virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-5998 RX DOI; 10.1016/j.virol.2005.01.020. RX PUBMED; 15721361. RA Gu H., Ghabrial S.A.; RT "The Bean pod mottle virus proteinase cofactor and putative helicase are RT symptom severity determinants"; RL Virology 333(2):271-283(2005). XX RN [2] RP 1-5998 RA Gu H., Zhang C., Ghabrial S.A.; RT "Natural reassortants of Bean pod mottle virus: Molecular characterization RT and symptom severity"; RL Unpublished. XX RN [3] RP 1-5998 RA Gu H., Zhang C., Ghabrial S.A.; RT ; RL Submitted (26-JUN-2001) to the INSDC. RL Plant Pathology, University of Kentucky, S-305 Ag Sci Bldg.-North, RL Lexington, KY 40546, USA XX DR MD5; 521291d69e41101646220f07ce37cc4b. DR EuropePMC; PMC2880234; 20376682. XX FH Key Location/Qualifiers FH FT source 1..5998 FT /organism="Bean pod mottle virus" FT /segment="RNA-1" FT /strain="K-Hopkins1" FT /mol_type="genomic RNA" FT /db_xref="taxon:12260" FT CDS 368..5923 FT /codon_start=1 FT /product="polyprotein 1" FT /note="proteolytically processed by virus-encoded protease FT to generate five mature proteins required for viral RNA FT replication" FT /db_xref="GOA:Q8JUF2" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:Q8JUF2" FT /protein_id="AAM73718.1" FT /translation="MKFYPGQNISEIVYHFQSNETANRLDAYFACGCEEDTEVLARLKQ FT CNPRLLHLSYAAFCLEMGSHSIEEMEYDDGELIFSYFQNFLLSIVSNSSKTTKLRAYIR FT SAFAYHFQHFVEFDQYTNDSLNTVDTSVSAQGIADLALSMVRWIPTQIKKVVNFGVGSV FT IESFSEHFNKLLMQYCPIVFQAFSWVNNIWTMVKEWIEEAAKEISWFLQGCKELLAWGM FT CILASSCALGLVEKCLISLGMISESFDLVGLFVRSAIVGAFCVSIKTGKFVTNSELITC FT ATIAVSTIATVMSQAFKPSEEIKGQFQALSVLEGLATQLTSFCDTSLVAMGKTCTAFNQ FT ICTAGKNVKVIAGRLLEVVSNFVRKLLGLDSAFLRDAALIFSQDVDGWLRNISWCQEQF FT LLKAYMSQDDLIVLRSLVVKGERMREQMLEGEVKVSPSVCNLIVKGCEEANKLMRESAL FT HCSKTIRKIPFVIFAHGESRVGKSLLVDRLITDFCDHLEIGEDAVYSRNPSDPFWSGYR FT RQPIVTIDDFAAVVSEPSAEAQLIPLVSSAPYPLNMAGLEEKGMHFDSQIMMCSSNFLE FT PSPEAKIRDDMAFRNRRHVLITVELKPGVEYDESDFTKNQRYLLKTWFHDHYVVDQTFE FT SYADLLAHCFTKWERHVKEQESNLSQIKGKKNESGHFNNFQQLMDLAVSWNLSADIMKN FT RIKAERNDMVYVFSAGRKDKIFHCFLNKEGECTVRPDSIDDPEAQALLKASETMLMKAY FT AFLKYNNATNLIVRTHLAELVNEDFYDEKFNFIGTIGTPAFHRQIAAHLEKMPLWQKAI FT LCGMGHCLSRKSKETWYTGMKEKFVQMMKSIYETEVTDWPVPLKIISGTILATILGTTF FT WKLFSFLRDAGNGGVFVGNVASAFTTSSVLEAQSRKPNRYEVSQYRYRNVPIKRRAWVE FT GQMSFDQSVVAIMSKCKASMRMGNTDAQILMVPGRRFIAHGHFFKNLTQKVRVQIVTSE FT KTYWHVYDPDKFQMFDNSEIGLYTNPTLEDIPHSAWDLFCWDSEKTLPNNFSAELLSCK FT LDTVTGQYYPEWAPINCRVHRQPIHITEGNYVRKQDVSIEYDACTIPNDCGSLVVAKVG FT NHKQIVGFHVAGSKGRLGYASLIPYVEPVVQAQSAEVYFDFFPVEVDSQEGVAHIGELK FT SGVYVPLPTKTNLVETPKEWQLDLPCDKIPSVLTTTDERLVGTEHEGYDPFLGGIQKYA FT TPMMPLDEEILSKVAQDMVEEWFDCVDEEDTFEEVSLSAALNGVEGLDYMERIPLATSE FT GFPHVLSRKNGEKGKRRFVTGDGEEMSLIPGTSVEEAYNKLTVELEKCVPTLVGIECPK FT DEKLPRRKIFDKPKTRCFTILPMEFNLVVRQKFLNFVRFIMKKRDKLSCQVGINPYSME FT WTGLANRLLSKGNDILCCDYASFDGLITKQVMSKMAEMINSLCGGDEKLMRERTHLLLA FT CCSRMAICKKDVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSF FT KNFISLCVYGDDNLISVHEYVKPYFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSE FT CDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVSCNNLEMQEAYLVNLVNVLRELYLHSP FT EEACQLRRRALSRIEWLQKADVPTIAQIEEFHSMQRIMNAPDSNDNIDLLLSIDLLGLQ FT GAGKAFPNKIVFDDKLVLANTQEFFDGNFPTDSWLPIFVNCLYPVSQLPAEAVIVNVVC FT GSGRGGLPTTAWISSAVNNRSSDINKKIRTALGKGKKIVFLTRVDPFPVALLAVLFGVK FT NEILSSNATNPMLTRLLENCKSLKYLVDECPFAFVN" XX SQ Sequence 5998 BP; 1740 A; 977 C; 1315 G; 1966 T; 0 other; tattaaaatt ttcataagat ttgaaatttt gataaaccgc gatcataggt tgccgcacct 60 taaaaccgga aacaaaagca atcgttactt gatttcaaag acttctcaat ttctctctac 120 atttcttgta tacagctttc aaagtgaaag aaaatcactc tctgtgctgg tcacagactt 180 cgtgaatcat tttctttctg ttctcagttc atttgctgaa cactctccta tttgatatag 240 gacttcgtgt cagatttgaa cttctcctat ctttctttct cggttcttca tttgatttca 300 aatttctctg aaatttaaat ttcttttgac attttgaact ttgtgttggc tccatttgaa 360 aaacaacatg aagttctatc ctggtcaaaa tatttctgaa attgtttacc actttcagag 420 taatgagaca gccaataggt tagatgcata ttttgcctgt ggctgtgagg aggatactga 480 agtcctcgct cgtttgaagc agtgtaatcc tcgtctgctt catttgtcat atgctgcttt 540 ttgtttggaa atgggcagtc attcaataga ggaaatggaa tatgatgatg gggaattaat 600 tttttcctat tttcaaaatt ttttgctttc catcgtttcc aattcttcta aaacaaccaa 660 attgagagca tacattcgtt cagcatttgc atatcatttt cagcattttg ttgaatttga 720 tcaatataca aatgattctc tcaatactgt agatacaagt gtatcagccc aagggatagc 780 agacttggct ctctctatgg ttagatggat acccactcag attaaaaaag ttgttaattt 840 tggtgtggga tctgttatag agtctttttc agagcatttt aataagctct tgatgcaata 900 ttgtccaata gtttttcaag ctttcagctg ggttaacaat atttggacaa tggtcaaaga 960 atggatagaa gaagctgcga aagaaatttc atggttcttg caaggatgta aagagctgct 1020 agcctgggga atgtgcattt tggctagctc ctgtgctcta ggattggttg aaaaatgcct 1080 tatctctttg ggcatgattt ctgaatcttt tgatttggtt ggtttgtttg ttcgatctgc 1140 cattgtggga gctttctgtg tttccataaa aactggtaag ttcgtcacga acagtgaatt 1200 gatcacttgt gctaccattg cagtttctac aatagcaact gtaatgtctc aggcttttaa 1260 gccttccgaa gagattaagg gacagttcca agccctttca gttctagaag ggttggcaac 1320 acagctcact tcattttgtg acacgtcttt agttgctatg ggaaaaacct gcacagcttt 1380 taatcaaatt tgcactgctg gcaaaaatgt taaggtgatt gcaggtaggt tgctagaagt 1440 tgtttctaat tttgtcagaa aattattagg attggatagt gcttttctca gagatgctgc 1500 actcattttt tctcaagatg tggatggatg gttgcgtaac atcagttggt gccaagaaca 1560 gtttttgttg aaggcttaca tgtcgcaaga tgatcttatt gtcctgcgct ccttagttgt 1620 caaaggtgaa agaatgaggg aacagatgct tgaaggagaa gttaaggtgt ctccaagtgt 1680 ttgcaacctt attgtcaaag gctgtgaaga agcaaataaa ttgatgcgtg agagcgcact 1740 tcattgttca aaaacaatta ggaagattcc ttttgttatt tttgctcacg gtgaatcccg 1800 ggttgggaaa tctctgctgg ttgataggct aatcacagat ttctgtgatc atttggaaat 1860 tggagaagat gctgtgtact caaggaatcc atcagatcct ttctggagtg gatatagaag 1920 gcagccaatt gttactattg atgattttgc tgctgttgtt tcggagccat ctgctgaagc 1980 tcagttaatt ccattagttt caagtgctcc ttatccatta aacatggctg gtttggagga 2040 aaagggaatg cactttgatt cccagatcat gatgtgttct tcaaatttct tagagccgtc 2100 tcctgaagct aaaattagag atgatatggc ttttagaaat cgaagacatg tgctgatcac 2160 agttgaactc aaacctgggg ttgaatatga tgagagtgat tttactaaaa atcagcgata 2220 tttgctgaaa acttggtttc atgatcatta tgttgtagac caaacttttg agtcttatgc 2280 tgatctgctg gcacattgtt ttactaagtg ggagagacat gttaaggagc aagaatcaaa 2340 tctgtctcaa atcaagggca agaaaaatga aagtggtcat ttcaataact ttcaacaact 2400 tatggatttg gctgtttcat ggaatcttag tgcagatatc atgaaaaaca ggatcaaggc 2460 tgagagaaat gacatggttt atgttttttc tgcagggagg aaggataaaa tttttcattg 2520 ttttctgaac aaggaaggcg agtgcacggt tcgtcctgat tcaatagatg atcctgaagc 2580 gcaagctttg ctcaaagctt cagagacaat gctcatgaaa gcctatgcct tcctcaaata 2640 taataatgca acaaatttga ttgtcagaac ccatttggca gaactggtga atgaagattt 2700 ctatgatgag aaattcaatt tcattggaac aattggaaca ccggcttttc atcgccaaat 2760 agctgcacat ttggaaaaga tgccattgtg gcaaaaagca attttgtgtg gaatgggaca 2820 ttgtttgtct cggaaaagca aagaaacctg gtatactggt atgaaggaga aatttgtgca 2880 gatgatgaaa agcatctatg aaactgaagt cacagattgg ccagtgccat tgaaaatcat 2940 ttctggtact attctagcca ccattttggg aacaactttt tggaagttat tttccttttt 3000 aagggatgct ggtaatggag gtgtttttgt tggtaatgtt gcttcagcat ttactacatc 3060 aagtgtgctc gaggcgcaaa gccgaaaacc taacagatat gaggtctctc aatataggta 3120 tcgcaatgtg ccaataaagc gcagagcgtg ggttgagggc caaatgtctt ttgatcaatc 3180 agtggtagca attatgtcaa aatgtaaagc cagtatgaga atgggaaaca ctgatgctca 3240 aattttgatg gttccagggc gtagattcat tgcacatggt cattttttca agaatctcac 3300 ccaaaaagtt agagtccaaa ttgttacttc tgagaaaacc tattggcatg tgtatgatcc 3360 tgataaattt caaatgtttg ataacagtga aatcgggttg tatacaaatc caactttgga 3420 ggacatccca cattctgctt gggacctttt ctgctgggac agtgagaaaa ctctgccaaa 3480 taatttttct gctgaattgc tttcctgtaa attggacact gttacgggac agtattaccc 3540 agaatgggct ccaataaatt gtcgagtaca tcggcaacca attcacataa ctgaagggaa 3600 ttatgttagg aaacaagatg taagcatcga atatgatgcc tgcacaattc ctaatgattg 3660 tggatctctg gtggttgcta aggtcggaaa tcacaagcaa attgttggtt ttcatgttgc 3720 tggaagcaaa ggaagattgg gctatgcttc attaatacca tatgttgagc ctgtggtaca 3780 agcccaaagt gctgaagtct attttgactt ctttcctgtg gaagttgata gtcaagaggg 3840 agttgctcat attggtgaac tcaaatctgg agtttatgta ccattgccca caaaaactaa 3900 tcttgtggaa actcccaaag aatggcagtt ggatttgcct tgtgataaga ttccaagtgt 3960 gttaaccact actgatgaga gattggttgg cacagagcat gaaggatatg acccatttct 4020 tggtggtatt caaaaatatg caactcccat gatgcctctt gatgaggaga ttctttccaa 4080 agttgcacaa gacatggttg aagaatggtt tgattgtgtt gatgaggagg atacatttga 4140 agaagtttct ttgagtgctg cactcaatgg tgttgaaggt ttggattaca tggaacgcat 4200 tcctcttgcc acttcagagg gttttcctca tgttctgtcc aggaaaaatg gtgaaaaagg 4260 caagagaaga tttgtcactg gagatggtga agaaatgtca ctaattcctg gtaccagtgt 4320 tgaagaagca tacaataaat tgactgttga actagaaaag tgtgttccaa cattggttgg 4380 catagaatgt cccaaggatg aaaaacttcc ccgtcgcaaa atttttgata aacccaagac 4440 gcgctgcttc accatacttc ctatggaatt taatctagtg gtgcgtcaaa aattcttgaa 4500 ttttgtgcga ttcattatga agaaaaggga caaattgagt tgccaagttg gaatcaatcc 4560 atattctatg gagtggactg gtttggcaaa tagactgttg agcaagggaa atgacatttt 4620 gtgttgtgac tatgctagtt ttgatggtct gataactaag caagtcatga gcaagatggc 4680 agaaatgata aacagtcttt gtggtggaga tgagaaactg atgcgtgaga gaacacatct 4740 tctgttagct tgttgctcca ggatggcaat ctgtaaaaaa gatgtttgga gagttgagtg 4800 tggtatccct tctggatttc cactcactgt tatctgtaat agcattttca atgagatgct 4860 tatcagatat agttatgaaa agttgttgcg tcaagctaag gctcctagta tgtttctcca 4920 gtcttttaaa aattttattt ctttgtgtgt ttatggagat gataatttaa ttagtgttca 4980 tgagtatgtt aagccatatt ttagtggttc taaattaaaa agtttcctag ctagtcataa 5040 catcaccatt actgatggaa ttgacaaaac tagtgcaact ttacagttta gaaagttgtc 5100 agagtgtgat tttcttaaaa gaaatttcaa gcaaatgtcc aatgttttgt gggtagctcc 5160 tgaagacaaa gctagtttgt ggtcacaatt acactatgtt tcatgtaaca atttggaaat 5220 gcaagaagct tatcttgtta acttggttaa tgtgttgcgt gagttgtacc tgcacagtcc 5280 agaagaagct tgtcagttga gaagaagggc tctctctcgt attgagtggt tgcaaaaagc 5340 tgatgtgccc accatagcac aaattgaaga atttcattca atgcagagga ttatgaatgc 5400 tcctgattca aatgataata ttgatctttt gttgagcatc gacttgttgg gtcttcaggg 5460 tgcaggcaag gccttcccaa ataagattgt gtttgatgat aaattggtat tggcaaatac 5520 acaagaattt tttgatggaa attttccaac agattcttgg ttaccaatat ttgttaattg 5580 tctttaccct gtgagtcaat tgcccgcaga agctgtcatt gttaatgttg tctgtgggag 5640 tgggcgcggt ggtttaccta ctactgcttg gattagttct gcagttaaca atcgctcctc 5700 agatatcaat aagaaaattc ggacagcgct tggaaaaggt aagaaaattg tctttttgac 5760 tagagttgat ccttttcctg tggccttgtt agctgttctt tttggtgtta agaacgaaat 5820 tctgagttct aatgccacaa atccaatgtt gacaaggctt cttgagaact gcaagagtct 5880 taaatatttg gttgatgagt gtccttttgc atttgttaac tagtttgtaa tattttgttc 5940 acttaaataa agcgcattac tatgtgcaat gagtgtgttt aaatataaaa aaaaaaaa 5998 //