ID AF394606; SV 1; linear; genomic RNA; STD; VRL; 6006 BP. XX AC AF394606; XX DT 02-JUL-2002 (Rel. 72, Created) DT 26-FEB-2005 (Rel. 83, Last updated, Version 3) XX DE Bean pod mottle virus strain K-Hancock1 segment RNA-1, complete sequence. XX KW . XX OS Bean pod mottle virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-6006 RX DOI; 10.1016/j.virol.2005.01.020. RX PUBMED; 15721361. RA Gu H., Ghabrial S.A.; RT "The Bean pod mottle virus proteinase cofactor and putative helicase are RT symptom severity determinants"; RL Virology 333(2):271-283(2005). XX RN [2] RP 1-6006 RA Gu H., Zhang C., Ghabrial S.A.; RT "Natural reassortants of Bean pod mottle virus: Molecular characterization RT and symptom severity"; RL Unpublished. XX RN [3] RP 1-6006 RA Gu H., Zhang C., Ghabrial S.A.; RT ; RL Submitted (26-JUN-2001) to the INSDC. RL Plant Pathology, University of Kentucky, S-305 Ag Sci Bldg.-North, RL Lexington, KY 40546, USA XX DR MD5; 6c1f740361cc4163f20924ecec785385. XX FH Key Location/Qualifiers FH FT source 1..6006 FT /organism="Bean pod mottle virus" FT /segment="RNA-1" FT /strain="K-Hancock1" FT /mol_type="genomic RNA" FT /db_xref="taxon:12260" FT CDS 371..5926 FT /codon_start=1 FT /product="polyprotein 1" FT /note="proteolytically processed by virus-encoded protease FT to generate five mature proteins required for viral RNA FT replication" FT /db_xref="GOA:Q8JUF5" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:Q8JUF5" FT /protein_id="AAM73715.1" FT /translation="MKFYPGQNVSEIVYHFQSNETANRLDAYFACGCEEDTEVLARLKQ FT CNPRLLHLSYAAFCLEMGSHSVEEIEYDDGELVFLYFQNFLLSIVSNSSKTANLRAYIR FT SAFAYHFQHFVEFDQYTNDSLNVMDTSVSAQGIADLALSMVRWIPTQIKKVVNFGVGSV FT IESFSEHFNKLIMQYCPIVFQAFSWVNNIWTMVKEWIEEAAKEISWFLQGCKELLAWGM FT CILASSCALGLVEKCLISLGMISESFDLVGLFVRSAIVGAFCVSIKTGKFVSNSELITC FT ATIAVSTIATVMSQAFKPSEEIKGQFQALSVLEGLATQLTSFCDTSLIAMGKTCTAFNQ FT ICTAGKNVKVIAGRLLDVVSNFVRKLLGLDSAFLRDAALIFSQDVDGWLRNISWCQEQF FT LLKAYMSQDDLIVLRSLVVKGERMREQMLEGEVKVSPSVCNLIVKGCEEASKLMRESVL FT HCSKTVRKIPFVIFAHGDSRVGKSLLVDRLITDFCDHLEIGEDAVYSRNPSDPFWSGYR FT RQPIVTIDDFAAVVSEPSAEAQLIPLISSAPYPLNMASLEEKGMHFDSQIMMCSSNFLE FT PSPEAKIRDDMAFRNRRHVLITVELKPGVEYDESDFTKNQRYLLKTWFHDHYVVDQTFE FT SYADLLAYCFTKWERHVKEQESNLSQIKGKKSESGHFNNFQQLMDLAVSWNLSANIMKE FT RIKADKSDMVYVFSAGRKDKIVHCFLNKEGECSIRPDSIEDPEAQLLLKASETMLMKAY FT AFLKYNNATNLIVRTHLAELVNEDFYDEKFNFIGTIGTPAFHRQIAAHLEKMPLWQKAI FT LCGMGHCLSRKSKETWYSGMKEKFVQMMKSIYETEVTDWPVPLKIISGTILATILGTTF FT WKLFSFLRDAGNGGVFVGNVASAFTTSSVLEAQSRKPNRYEVSQYRYRNVPIKRRAWVE FT GQMSFDQSVVAIMSKCKASMRMGNTDAQILMVPGRRFIAHGHFFKNLTQKVRVQIVTSE FT KSYWHVYDPDKFQMFDNSEIGLYSNPTLEDIPHSAWDLFCWDSEKTLPNNFSAELLSCK FT LDTVTGQYYPEWAPINCRVHRQPIHITEGNYVRKQDVSIEYDACTIPNDCGSLVVAKVG FT NHKQIVGFHVAGSKGRLGYASLIPYVEPVVQAQSAEVYFDFFPVEVDSQEGVAHIGELK FT SGVYVPLPTKTNLVETPKEWQLDLPCDKIPSVLTTTDERLVGTEHEGYDPFLGGIQKYA FT TPMMPLDEEILSKVAQDMVEEWFDCVDEEDSFEEVSLSAALNGVEGLDYMERIPLATSE FT GFPHVLSRKNGEKGKRRFVSGDGEEMTLIPGTSVEEAYNKLIVELEKSVPTLVGIECPK FT DEKLPRRKIFDKPKTRCFTILPMEFNLVVRQKFLNFVRFIMKKRDKLSCQVGINPYSME FT WTGLANRLLSKGNDILCCDYASFDGLITKQVMSKMAEMINSLCGGDEKLMRERTHLLLA FT CCSRMAICKKDVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSF FT KNFVSLCVYGDDNLISVHEYVKPYFSGSKLKSFLAGHNITITDGIDKTSATLQFRKLAD FT CDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVSCNNLEMQEAYLVNLVNVLRELYLHSP FT EEARQLRRKALSRIEWLQKADVPTIAQIEEFHSMQRMMNAPDSNDNIDLLLSIDLLGLQ FT GAGKAFPNKIVFDDKLVLANTQEFFDGNFPVDSWLPIFVNCLYPVSQLPSEAVVVNVTC FT GSGRGGLPTTAWISSAVNNRSSDINKKIRTALGKGKKIVFLTRVDPFPVALLAVLFGVK FT NEILSSNATNPMLTRLLENCKSLKYLVDECPFAFVN" XX SQ Sequence 6006 BP; 1748 A; 984 C; 1302 G; 1972 T; 0 other; tattaaaatt ttcataagat ttgaaatttt gataaaccgc gatcacaggt tgccgcacct 60 taaaaccgga aacaaaagca atcgttactt gttctcaaga atcttcaaac tttcttctgt 120 tttctctgca ctcggttttt caggaaaaga aaatcactct ctgtattgat tacagacttc 180 gtgaatcatt ttctttttca actttcagtt cacttgctga acactctcct ataaatatat 240 aggacttcgt gtcagatttg aacttttcct gtctctttct cggttttctt tcttattctc 300 atcttcttta aattttaagg ctcgtatttt gtttctttaa actttctgtt ggactcattt 360 gaaatacaac atgaagtttt atccaggaca aaatgtctct gaaattgttt atcattttca 420 gagtaatgag acagctaata ggcttgatgc ttattttgcc tgtggctgtg aagaggatac 480 tgaagtcctc gctcgcttga agcaatgtaa ccctcggtta ctgcatttat cttatgctgc 540 tttctgtttg gaaatgggca gtcattctgt tgaagaaata gaatatgatg atggagagtt 600 ggttttcttg tatttccaaa attttctact ctccatagtg tccaattctt ccaaaacagc 660 aaatctgaga gcatacatac gttcagcttt tgcatatcat tttcagcatt ttgttgaatt 720 tgatcaatat acaaatgatt ctctcaatgt gatggataca agcgtatctg ctcaaggaat 780 tgcagatttg gctctgtcca tggtcagatg gattcctact caaattaaaa aagttgtgaa 840 ttttggggta ggatcggtca tagaatcctt ttcagaacat ttcaataagc tcataatgca 900 atattgtcca atagtgttcc aagcttttag ctgggtcaac aatatttgga ccatggttaa 960 agaatggatt gaagaggctg cgaaggaaat ttcttggttc ctgcagggtt gtaaggaatt 1020 attagcttgg ggaatgtgta ttctggctag ttcctgtgct ttgggattgg ttgaaaaatg 1080 tctcatttct ttaggcatga tttctgaatc ttttgatttg gttggtttgt ttgttcgatc 1140 agccattgtt ggggccttct gtgtttctat caagacgggc aagtttgttt caaatagtga 1200 gttgatcaca tgtgctacca ttgcagtttc tacaattgca actgttatgt ctcaagcttt 1260 caaaccttct gaagaaatta aagggcaatt ccaggctctt tctgttttag agggattggc 1320 aacacaactc acttcatttt gtgacacatc tttgattgcc atgggaaaaa cctgcacagc 1380 atttaatcaa atttgtactg ctgggaaaaa tgttaaagtg attgctggca gattgttgga 1440 tgtagtttcc aattttgtaa ggaaactttt gggattggat agtgcttttc ttagagatgc 1500 agcgcttatt ttctctcaag atgttgacgg ttggttgcgc aatatcagct ggtgtcagga 1560 acaattccta ctgaaagcat acatgtctca agatgatctt attgtcttgc gttccttagt 1620 tgtcaaaggt gaaagaatga gagagcaaat gctggaggga gaggttaaag tgtctcctag 1680 tgtttgtaat cttattgtaa aaggttgtga agaagcaagt aagttgatga gagaaagtgt 1740 gctacattgt tcaaagactg tacgaaaaat tccatttgtt atttttgcac acggtgattc 1800 tcgtgttgga aaatctttgc tagttgatag acttatcaca gatttttgtg atcatctaga 1860 aattggggag gatgctgttt attcaaggaa tccttcggat cctttctgga gtgggtatag 1920 gagacaacca atcgtcacta ttgatgattt tgctgctgtt gtatcagagc catctgctga 1980 ggctcaattg attccattaa tttcaagtgc tccataccca ttgaacatgg caagtttaga 2040 ggaaaaggga atgcattttg attctcagat catgatgtgc tcttcaaatt ttttggaacc 2100 ttctcctgaa gccaaaatta gagatgacat ggcttttaga aatagaagac atgttttgat 2160 aacagttgag cttaaacctg gagtggagta tgatgagagc gattttacca aaaatcagcg 2220 gtatttactc aaaacttggt ttcatgatca ttatgttgta gaccaaactt ttgaatctta 2280 tgctgatctt ttggcatatt gcttcactaa atgggagaga catgtgaagg aacaagagtc 2340 taatttgtct caaattaaag gcaagaaaag tgagagtggc catttcaata attttcaaca 2400 acttatggat ttggcagttt catggaatct cagtgcaaat atcatgaagg aacgaatcaa 2460 agctgataaa agtgatatgg tttatgtctt ctctgctgga aggaaggaca aaattgtaca 2520 ttgctttttg aacaaagaag gcgaatgtag tatacgtcct gattcaatag aagatccaga 2580 agcacaactc ttgctcaaag cttcagaaac tatgctcatg aaagcttatg cttttttgaa 2640 gtacaacaat gcgaccaatt tgattgtcag gacccatttg gcagaattgg tcaatgaaga 2700 cttttatgat gaaaagttta attttattgg cacaattggg actccagctt ttcatcgaca 2760 aattgctgca cacttggaga aaatgccatt atggcaaaaa gcaattttgt gtggaatggg 2820 acattgtttg tctcggaaaa gcaaagagac atggtattct gggatgaagg aaaaatttgt 2880 acaaatgatg aagagcatct atgaaacaga agttacagat tggccagtac cactgaaaat 2940 catttctgga accattcttg caacaatttt gggaacaacc ttctggaaac tcttttcctt 3000 tcttagagat gctggtaatg ggggagtttt tgttggtaat gttgcttcag cattcacaac 3060 ttcaagtgtg cttgaggccc aaagtagaaa gcccaacaga tatgaagttt cccaatacag 3120 atatcgcaat gtgccaataa agcgcagagc atgggttgaa ggccagatgt ctttcgatca 3180 gtctgtagta gcaattatgt ctaaatgcaa agccagcatg agaatgggaa acactgatgc 3240 tcaaatcttg atggttccag ggcgcagatt catagctcat ggacattttt tcaaaaatct 3300 gactcagaaa gtgcgagtcc agattgttac atctgaaaag agttactggc atgtgtatga 3360 tcctgacaag tttcagatgt ttgacaacag tgaaataggt ctttattcta atcccacttt 3420 ggaagatatc ccacattcag cttgggacct tttttgctgg gacagtgaga aaactttgcc 3480 aaataatttt tctgcagaat tgctctcttg caaattggat actgttactg gccaatacta 3540 tcctgagtgg gctccaatta attgtcgagt tcatcgacaa ccaattcaca tcactgaagg 3600 aaattatgtc agaaagcaag atgtcagtat tgaatatgat gcatgtacaa ttccaaatga 3660 ttgtggttca ttggttgttg ccaaggttgg aaatcacaaa caaattgttg gtttccatgt 3720 tgctggaagc aaaggaagac tgggatatgc ttcattgata ccatatgttg agccagtcgt 3780 gcaagctcaa agtgctgaag tttactttga tttcttccct gtggaggttg atagtcaaga 3840 gggagttgct cacattggtg aattgaaatc tggtgtctat gttccactgc ctacaaaaac 3900 taatttggtg gaaactccca aggaatggca actggatcta ccttgtgata aaattcctag 3960 tgtcttgact acaactgatg agagattggt gggcacagaa catgagggat atgatccttt 4020 tcttggtgga attcaaaaat atgccactcc catgatgccc ctagatgaag aaattctttc 4080 taaggttgca caagatatgg ttgaggaatg gtttgattgt gttgatgagg aggattcctt 4140 tgaggaagtt tctttaagtg cagcactcaa tggtgttgag ggtttggact atatggaaag 4200 aattcctctt gccacatctg agggttttcc tcatgtgctt tcacgcaaaa atggtgaaaa 4260 aggcaaaagg agatttgttt ctggggatgg tgaagagatg acattgatcc cgggaaccag 4320 tgttgaagag gcttacaaca agctaatagt tgaacttgaa aaaagtgttc ctacattagt 4380 tggcattgaa tgtcccaagg atgagaaact tcctcgtcgc aaaatttttg acaaacctaa 4440 gacgcgctgc ttcactattc tccctatgga gtttaatctt gtggttcgtc aaaagttttt 4500 aaattttgtg aggttcatta tgaagaaaag ggacaagctt agttgtcaag tcggaatcaa 4560 cccatactcc atggaatgga ctggtttggc caatagatta ttgagtaagg gcaacgatat 4620 tctgtgttgc gattatgcta gttttgatgg tttgattacc aagcaagtta tgagcaagat 4680 ggcagaaatg ataaacagtc tttgtggtgg tgatgaaaaa ttgatgcgtg aaaggacaca 4740 cctactgttg gcttgttgtt caaggatggc aatttgtaag aaagatgttt ggagggttga 4800 atgtggaatc ccttctggat ttccgctcac agttatttgc aatagcattt ttaatgagat 4860 gctcattaga tatagctatg aaaaattact gcgtcaggct aaagctccaa gtatgttttt 4920 acaatccttc aaaaattttg tttctttgtg tgtgtatggt gatgacaact taattagtgt 4980 tcatgaatat gtcaagcctt actttagtgg ttctaaattg aaaagctttc tagctggtca 5040 taatatcacc attactgatg gtattgacaa aactagtgca actttgcaat ttagaaagtt 5100 agcagattgt gattttctca agagaaactt taagcagatg tctaatgttt tgtgggtggc 5160 tcctgaggac aaggcgagtt tatggtcaca acttcattat gtttcgtgta ataatctgga 5220 aatgcaagaa gcttatcttg tcaatctcgt aaatgtgtta cgagaattgt atttgcacag 5280 tccagaggaa gctcgccaat tgagaaggaa agctctctct cgtatcgaat ggctgcaaaa 5340 agctgatgtg cctaccatag cacagattga agagttccat tcgatgcaga ggatgatgaa 5400 tgctcctgat tcaaatgata atattgacct actgttgagc attgatttgt tgggtttaca 5460 aggagcaggt aaagcttttc caaacaagat tgtttttgat gataagcttg tgttggctaa 5520 cacacaagaa ttctttgatg gaaattttcc agtggattct tggttaccaa tttttgtgaa 5580 ttgtctttat cctgtaagtc aattaccttc agaagctgtt gttgtaaatg tcacatgtgg 5640 tagtggacgt ggtggtttac ccaccactgc ttggattagt tctgcagtta acaatcgctc 5700 ctcagatatc aacaaaaaga ttcgcacagc acttgggaaa ggtaagaaaa ttgtttttct 5760 tactagagtt gatccttttc cagtagcttt actggctgtt ctttttggcg ttaagaatga 5820 aattctgagt tctaacgcca ctaaccctat gctgacgcga cttcttgaga actgtaagag 5880 tctcaaatat ctggttgatg agtgtccttt tgcatttgtg aactagtatg taatatttta 5940 ttcacttaaa taaagcgcat tactatgtgc aatgagtgtg tttaaatata aaaaaaaaaa 6000 aaaaaa 6006 //