ID AF369928; SV 1; linear; genomic RNA; STD; VRL; 2832 BP. XX AC AF369928; XX DT 27-JUN-2001 (Rel. 68, Created) DT 22-JAN-2002 (Rel. 70, Last updated, Version 2) XX DE Sugarcane yellow leaf virus isolate SCYLV-C3 protease and RNA-dependent RNA DE polymerase genes, partial cds; capsid protein and movement protein genes, DE complete cds; and aphid transmission factor gene, partial cds. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-2832 RX PUBMED; 11773408. RA Moonan F., Mirkov T.E.; RT "Analyses of genotypic diversity among North, South, and Central American RT isolates of sugarcane yellow leaf virus: evidence for Colombian origins and RT for intraspecific spatial phylogenetic variation"; RL J. Virol. 76(3):1339-1348(2002). XX RN [2] RP 1-2832 RA Moonan F., Mirkov T.E.; RT ; RL Submitted (12-APR-2001) to the INSDC. RL Plant Pathology, The Texas A & M Agricultural Experiment Station and Texas RL A & M University System, TAES-2415 East Highway 83, Weslaco, TX 78596, USA XX DR MD5; 9d9ba62109f6fcde2db0b0ca65f3a091. XX FH Key Location/Qualifiers FH FT source 1..2832 FT /organism="Sugarcane yellow leaf virus" FT /isolate="SCYLV-C3" FT /mol_type="genomic RNA" FT /country="Colombia: Cali" FT /clone="CC85-964" FT /db_xref="taxon:94290" FT CDS <1..677 FT /codon_start=3 FT /product="protease" FT /note="ORF1" FT /db_xref="GOA:Q91L40" FT /db_xref="InterPro:IPR000382" FT /db_xref="UniProtKB/TrEMBL:Q91L40" FT /protein_id="AAK66850.1" FT /translation="DIADYAEEVYEKXLAEPKVWKPASGKYWWEMAEEEDDFVVEAKXP FT PPXXPVEXAXXXXQTPXXTVEKAXXXXZXTPXQGNEPSGADHLKTPESTPLKXDESTKE FT LLNNIVSQLIQKIDLSSIATRVEEKLLXXAQNKQQQNGGKKSPRKRKTSNTSSKPXTNG FT KXPPVTSQGSGXAANSXRYTIPQNRXAHNGESASSQXTQXWRPKSPXSGGLSSAPKPKR FT QV" FT CDS <218..1936 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2; produced by predicted -1 translational FT frameshift of ORF1 gene product" FT /note="ribosomal slippage" FT /db_xref="GOA:Q91L39" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q91L39" FT /protein_id="AAK66851.1" FT /translation="XADSXXGKRAXWRRPLKNTGIHPAQARRIYKRVAQQHRLAVDXKD FT RPELHCNEGGGETAAXXXEQTAAERREEVAXKTQDLEHFFQAAYKWEEXXSDIPGFRKC FT GKLPALYHPPKPKSTQWGERIISEHPEMASKVAGFGWPLFGAQAEETSLRLQAARWLKR FT AESAEKPTXXXXXLVIDRVVKAYEPCXTNAPHTSSSGSLXWXDFXKDFKEAXNSLELDA FT GIGLPYKLLXKDXHRQMVEDPKFLPLLTRLTWNRLQKMSQVDFXEMTPEQLVREGLCDP FT IRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQNKRDIALWRAIPSKPGFG FT LSTDREAREFIESLSKTVGCSPAEVIRGWRBKIVPTDCSGFDWSVADWMLEDDMEVRNL FT LTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGVQKSGSYNTSSSNSRVRVMA FT AFHCGADWAIAMGDDALESPNSNINAYQXLGFKVEVASQLXFCSHVFEQEDLARPLNVN FT KMLYRLIFGYNPACGNAEVLCNYXQAVASVLNELRHDPQLVATLHQWLVPGATTK" FT CDS 2128..2718 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF3" FT /db_xref="GOA:Q91L38" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q91L38" FT /protein_id="AAK66853.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKIISFPVKRNAKKTFPAPFIRGKDFMTT FT SADQFWLLYKGNGDGSLAGQLVCRFECLFQNPK" FT CDS 2128..>2832 FT /codon_start=1 FT /transl_except=(pos:2716..2718,aa:OTHER) FT /product="aphid transmission factor" FT /note="ORF5; produced by translational readthrough of the FT stop codon of ORF 3; readthrough occurs at a frequency of FT about 25%" FT /db_xref="GOA:Q91L37" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q91L37" FT /protein_id="AAK66854.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKIISFPVKRNAKKTFPAPFIRGKDFMTT FT SADQFWLLYKGNGDGSLAGQLVCRFECLFQNPKXVGDAPPTPTPQPTPPAPAPAPAPKY FT FGYQGVPNNIVKT" FT CDS 2159..2611 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q91L36" FT /protein_id="AAK66852.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISRPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKPSRPPSSGGKTS" XX SQ Sequence 2832 BP; 742 A; 737 C; 673 G; 555 T; 125 other; cagacattgc tgattacgcy gargargtgt atgaraaarc ccttgcagag ccyaaagtgt 60 ggaaaccygc cagcggyaaa tactggtggg aaatggcyga rgaagaggat gatttygtsg 120 twgargcraa rytwcctccc cctgrwwmmc cygttgagaa mgctmcagsa rarragcaga 180 ctccagywys sactgtygag aaagctwygr ytsctgwysa gcmgactccr gwycagggaa 240 acgagccrag tggcgccgac cacttaaaaa caccggaatc caccccgctc aagcmagacg 300 aatctacaaa agagttgctc aacaacatcg tctcgcagtt gatycaaaag atcgacctga 360 gctccattgc aacgagggtg gaggagaaac tgctgcrwma rgcmcagaac aaacagcagc 420 agaacggagg gaagaagtcg ccmmgaaaac gcaagacctc gaacacttct tccaagccgc 480 wtacaaatgg gaagarwccm ccagtgacat cccagggttc aggaartgcg gcaaactccc 540 mgcgctatac catcccccaa aaccgaarag cacacaatgg ggagagcgca tcatctcaga 600 rcacccagar atggcgtcca aagtcgccgg wttcgggtgg cctctcttcg gcgcccaagc 660 cgaagagaca agtctgagrc tccaagcggc mcgctggcty aaacgagcyg agtcagcgga 720 aaagccgacw gmaaammmam ssmagctcgt cattgatcgt gtggtsaagg catatgaacc 780 gtgtaraacc aatgccccac acaccagctc ctctggyagc ctcmtstggw mygayttcyt 840 saargattty aargaggctr tcaactcact agaactygay gcwggaatag gtctcccata 900 yaarctycty macaargacr ytcatcgtca ratggttgaa gaccccaaat tcctgccgct 960 cctgacgcga ttgacctgga accgtttaca gaagatgtcc caggttgayt tccrggagat 1020 gactcctgaa caactagtga gagaaggatt gtgcgayccg attcgtttgt tcgtcaargg 1080 rgaaccgcac aagcaggcma arcttgatga agggcgctac cgcctcatca tgtcagtctc 1140 gctggtagat caactggtag cccgggtttt rttycargca caaaacaara gagatatagc 1200 tttgtggaga gctatcccgt caaagcccgg ttttggctta tccacagaca gggaagcacg 1260 cgaattcata gaatccctgt ccaagacagt agggtgttcc ccagctgaag tcattcgtgg 1320 ctggcggrac aagatcgtac ccaccgactg ttccggcttc gactggtcag tcgccgactg 1380 gatgctcgag gacgacatgg aagtgagaaa ccttctcact atcaacaaca acgagctcac 1440 ccggcgcctt cgggcatgct ggctgaagtg catcactaac tcagtgattt gcacgtccgg 1500 cggtgtcttg tacgcccaaa ctcaccctgg tgtgcagaaa tctggatctt ayaacacgag 1560 ttcatccaat tccagggttc gagtgatggc cgcttttcat tgcggtgctg attgggcgat 1620 agccatgggg gatgacgcac ttgaatcccc aaactccaac atcaacgcgt accaaargtt 1680 ggggttcaaa gtcgaggttg cttcacagct agrattttgc tcacacgtct ttgagcagga 1740 agacctcgcc aggccgttga acgtraacaa gatgctttat cgtttgatat ttggatacaa 1800 tccggcctgt ggcaacgcgg aggtattgtg caattaccyc caagctgtgg cttcagttct 1860 caacgagtta cgccacgatc cgcagctagt tgccaccctc catcagtggt tggtacctgg 1920 cgccaccaca aaataaatac ggagggtcat cccgagccac catttaggtt gcgagagtgg 1980 aacgggcagt cctaacaagc cgcgagattc tggattacaa gctactagct ggggtcctta 2040 ttggcattct cattgcgatc cccctagtga ttttagcggc ttacctgata ttcctcaaaa 2100 tcagtgcaca tatccgagcg attgttaatg aatacgggcg ctaaccgctc acgaaggaat 2160 gtcagaagac gcgctaaccg tcgtcgacag actcggccag tggtcgtggt ccggcctgcc 2220 gcaggaccta gacgagtacg acgacgtaga gcacgtgttg gaggaaacgc tgtgcgagga 2280 ccgggaggaa gaagcaacag ggatgttctc actttcacga ttgacgatct caaggccaac 2340 tcaaccggga tcctcaaatt cggaccgaac ctatctcagt acgcagcgtt caacaatggc 2400 ttactcaaag cctaccatga gtataaaatc acaagtctca ctattcagta taactcatgc 2460 tcctccgacg caactccagg tgcaatcgca cttgaagtgg atacatcctg ctcccaaaca 2520 acaacaggct ccaagattat tagcttcccc gtcaagagga acgccaagaa aaccttcccg 2580 gcccccttca tcagggggaa agacttcatg actacatcag ctgatcagtt ttggcttttg 2640 tacaaaggga atggagacgg aagcctagca ggacaactcg tctgccgatt tgaatgttta 2700 ttccagaatc ccaaataggt aggcgacgct ccccctacac ccacaccaca accaacccca 2760 cctgctccgg ccccggcacc agcacctaaa tattttggat atcaaggtgt gccgaacaac 2820 atcgtgaaaa ca 2832 //