ID AF369927; SV 1; linear; genomic RNA; STD; VRL; 2832 BP. XX AC AF369927; XX DT 27-JUN-2001 (Rel. 68, Created) DT 22-JAN-2002 (Rel. 70, Last updated, Version 2) XX DE Sugarcane yellow leaf virus isolate SCYLV-C1 protease and RNA-dependent RNA DE polymerase genes, partial cds; capsid protein and movement protein genes, DE complete cds; and aphid transmission factor gene, partial cds. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-2832 RX PUBMED; 11773408. RA Moonan F., Mirkov T.E.; RT "Analyses of genotypic diversity among North, South, and Central American RT isolates of sugarcane yellow leaf virus: evidence for Colombian origins and RT for intraspecific spatial phylogenetic variation"; RL J. Virol. 76(3):1339-1348(2002). XX RN [2] RP 1-2832 RA Moonan F., Mirkov T.E.; RT ; RL Submitted (12-APR-2001) to the INSDC. RL Plant Pathology, The Texas A & M Agricultural Experiment Station and Texas RL A & M University System, TAES-2415 East Highway 83, Weslaco, TX 78596, USA XX DR MD5; 4d86f761dffd54f5d0ab86ebd3308c14. XX FH Key Location/Qualifiers FH FT source 1..2832 FT /organism="Sugarcane yellow leaf virus" FT /isolate="SCYLV-C1" FT /mol_type="genomic RNA" FT /country="Colombia: Cali" FT /clone="SP71-6163" FT /db_xref="taxon:94290" FT CDS <1..677 FT /codon_start=3 FT /product="protease" FT /note="ORF1" FT /db_xref="GOA:Q91L43" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q91L43" FT /protein_id="AAK66845.1" FT /translation="DIADYAEEVYEKTLAEPKVWKPASGKYWWEMAEEEDDFVVEAKLP FT PPDKPVENATAXEQTPAXTVEKAMVADQPTPDQGNEPSGADHLKTPESTPLKQDESTKE FT LLNNIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQBGGKKSPRKRKTSNTSSKPHTNG FT KSPPVTSQGSGNAANSPRYTIPQNRRAHNGESASSQSTQKWRPKSPVSGGPPSAPKPKR FT QV" FT CDS <218..1936 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2; produced by predicted -1 translational FT frameshift of ORF1 gene product" FT /note="ribosomal slippage" FT /db_xref="GOA:Q91L42" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q91L42" FT /protein_id="AAK66846.1" FT /translation="SADSRPGKRAKWRRPLKNTGIHPAQARRIYKRVAQQHRLAVDSKD FT RPELHCNEGGGETAASGPEQTAAXRREEVAQKTQDLEHFFQAAYKWEESTSDIPGFRKC FT GKLPALYHPPKPKSTQWGERIISEHPEMASKVAGFGWPSFGAQAEETSLRLQAARWLKR FT AESAEKPTEKQRKLVIDRVVKAYEPCRTNAPHTSSSGSLIWSDFLKDFKEAVNSLELDA FT GIGLPYKLLHKDTHRQMVEDPKFLPLLTRLTWNRLQKMSQVDFQEMTPEQLVREGLCDP FT IRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQNKRDIALWRAIPSKPGFG FT LSTDREAREFIESLSKTVGCSPAEVIRGWRNKIVPTDCSGFDWSVADWMLEDDMEVRNL FT LTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGVQKSGSYNTSSSNSRVRVMA FT AFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVXSQLEFCSHVFEQEDLARPLNVN FT KMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLVATLHQWLVPGAXTK" FT CDS 2128..2718 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF3" FT /db_xref="GOA:Q9QQN7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9QQN7" FT /protein_id="AAK66848.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK" FT CDS 2128..>2832 FT /codon_start=1 FT /transl_except=(pos:2716..2718,aa:OTHER) FT /product="aphid transmission factor" FT /note="ORF5; produced by translational readthrough of the FT stop codon of ORF 3; readthrough occurs at a frequency of FT about 25%" FT /db_xref="GOA:Q91L41" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q91L41" FT /protein_id="AAK66849.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPTPTPPAPTPAPAPKY FT FGYQGVPNNIVKT" FT CDS 2159..2611 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q9WI47" FT /protein_id="AAK66847.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS" XX SQ Sequence 2832 BP; 779 A; 769 C; 696 G; 578 T; 10 other; cagacattgc tgattacgcc gaggaggtgt atgagaaaac ccttgcagag cctaaagtgt 60 ggaaacctgc cagcggtaaa tactggtggg aaatggctga agaagaggat gattttgtcg 120 tagaggcaaa gttacctccc cctgataaac ctgttgagaa cgctacagca raagagcaga 180 ctccagctyc gactgtcgag aaagctatgg ttgctgatca gccgactcca gaccagggaa 240 acgagccaag tggcgccgac cacttaaaaa caccggaatc caccccgctc aagcaagacg 300 aatctacaaa agagttgctc aacaacatcg tctcgcagtt gattcaaaag atcgacctga 360 gctccattgc aacgagggtg gaggagaaac tgctgcgtca ggcccagaac aaacagcagc 420 agracggagg gaagaagtcg cccagaaaac gcaagacctc gaacacttct tccaagccgc 480 atacaaatgg gaagagtcca ccagtgacat cccagggttc aggaaatgcg gcaaactccc 540 cgcgctatac catcccccaa aaccgaagag cacacaatgg ggagagcgca tcatctcaga 600 gcacccagaa atggcgtcca aagtcgccgg tttcgggtgg ccctccttcg gcgcccaagc 660 cgaagagaca agtctgagac tccaagcggc acgctggctt aaacgagctg agtcagcgga 720 aaagccgaca gaaaaacaac gcaagctcgt cattgatcgt gtggtcaagg catatgaacc 780 gtgtagaacc aatgccccac acaccagctc ctctggcagc ctcatctggt ccgacttctt 840 gaaagatttc aaggaggctg tcaactcact agaactcgat gcaggaatag gtctcccata 900 taagcttctt cacaaagaca ctcatcgtca gatggttgaa gaccccaaat tcctgccgct 960 cctgacgcga ttgacctgga accgtttaca gaagatgtcc caggttgact tccaggagat 1020 gactcctgaa caactagtga gagaaggatt gtgcgatccg attcgtttgt tcgtcaaagg 1080 agaaccgcac aagcaggcaa aacttgatga agggcgctac cgcctcatca tgtcagtctc 1140 gctggtagat caactggtag cccgggtttt gtttcaggca caaaacaaaa gagatatagc 1200 tttgtggaga gctatyccgt caaagcccgg ttttggctta tccacagaca gggaagcacg 1260 cgaattcata gaatccctgt ccaagacagt agggtgttcc ccagctgaag tcattcgtgg 1320 ctggcggaac aagatcgtac ccaccgactg ttccggcttc gactggtcag tcgccgactg 1380 gatgctcgag gacgacatgg aagtgagaaa ccttctcact atcaacaaca acgagctcac 1440 ccggcgcctt cgggcatgct ggctgaagtg catcactaac tcagtgattt gcacgtccgg 1500 cggtgtcttg tacgcccaaa ctcaccctgg tgtgcagaaa tctggatctt acaacacgag 1560 ttcatccaat tccagggttc gagtgatggc cgcttttcat tgcggtgctg attgggcgat 1620 agccatgggg gatgacgcac ttgaatcccc aaactccaac atcaacgcgt aycaaaagtt 1680 ggggttcaaa gtcgaggttk cttcacagct agaattttgc tcacacgtct ttgagcagga 1740 agacctcgcc aggccgttga acgtaaacaa gatgctttat cgtttgatat ttggatacaa 1800 tccggcctgt ggcaacgcgg aggtattgtg caattacctc caagctgtgg cttcagttct 1860 maacgagtta cgccacgatc cgcagctagt tgccacyctc catcagtggt tggtacctgg 1920 cgccrccaca aaataaatac ggagggtcat cccgagccac catttaggtt gcgagagtgg 1980 aacgggcagt cctaacaagc cgcgagattc tggattacaa gctactagct ggggtcctta 2040 ttggcattct cattgcgatc cccctagtga ttttagcggc ttacctgata ttcctcaaaa 2100 tcagtgcaca tatccgagcg attgttaatg aatacgggcg ctaaccgctc acgaaggaat 2160 gtcagaagac gcgctaaccg tcgtagacag actcggccag tggtcgtggt ccgggctccc 2220 ccaggaccta gacgagtacg acgacgtaga gcacgtgttg gaggaaacgc tgtgcgagga 2280 ccgggaggaa gaagcaaccg ggatgttctc actttcacgg ttgacgatct caaagccaac 2340 tcaaccggga tcctcaaatt cggaccgaac ttatctcagt acgcagcgtt caacaatggc 2400 ttactcaaag cctaccatga gtataaaatc acaagtctca ctattcagta taactcatgc 2460 tcctccgacg caactccagg tgcaatcgca cttgaagtgg atacatcctg ctcccaaaca 2520 acaacaggct ccaagattac tagcttcccc gtcaagagga acgccaagaa agtcttcccg 2580 gcccccttca tcagggggaa agatttcatg actacgtcag ctgaccagtt ttggttgctg 2640 tacaaaggra atggagactc gagcctagca ggacaattcg tctgccgatt tgaatgcctt 2700 ttccagaatc ccaaataggt aggcgacgct cccccaacac ccaccccaac accaacccca 2760 cccgctccga ccccggcacc ggctcccaag tattttggat accaaggagt gccgaacaac 2820 atcgtgaaaa ca 2832 //