ID AF369926; SV 1; linear; genomic RNA; STD; VRL; 2835 BP. XX AC AF369926; XX DT 27-JUN-2001 (Rel. 68, Created) DT 22-JAN-2002 (Rel. 70, Last updated, Version 2) XX DE Sugarcane yellow leaf virus isolate SCYLV-N6 protease and RNA-dependent RNA DE polymerase genes, partial cds; capsid protein and movement protein genes, DE complete cds; and aphid transmission factor gene, partial cds. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-2835 RX PUBMED; 11773408. RA Moonan F., Mirkov T.E.; RT "Analyses of genotypic diversity among North, South, and Central American RT isolates of sugarcane yellow leaf virus: evidence for Colombian origins and RT for intraspecific spatial phylogenetic variation"; RL J. Virol. 76(3):1339-1348(2002). XX RN [2] RP 1-2835 RA Moonan F., Mirkov T.E.; RT ; RL Submitted (12-APR-2001) to the INSDC. RL Plant Pathology, The Texas A & M Agricultural Experiment Station and Texas RL A & M University System, TAES-2415 East Highway 83, Weslaco, TX 78596, USA XX DR MD5; 76afed8e9b3e79eb6378e1111b12e7d9. XX FH Key Location/Qualifiers FH FT source 1..2835 FT /organism="Sugarcane yellow leaf virus" FT /isolate="SCYLV-N6" FT /mol_type="genomic RNA" FT /country="Argentina: Santa Rosa" FT /clone="Q136" FT /db_xref="taxon:94290" FT CDS <1..677 FT /codon_start=3 FT /product="protease" FT /note="ORF1" FT /db_xref="GOA:Q91L48" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q91L48" FT /protein_id="AAK66840.1" FT /translation="DIADYAEEVYEKALAEPKVWKPASGKYWWEMAEEEDDFVVEAKSP FT PPDKPVENATAKEQTPASTVEKAMVADQPTPXQGNEPSGADHLKTPEXTPLKQDESTKE FT LLNNIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKRKTSNTSSKPHTNG FT KSPPVTSQGSGNAANSPRYTIPQNRRAHNGESASSQSTQKWRPKSPVSGGPPSALKPKR FT QV" FT CDS <218..1936 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2; produced by predicted -1 translational FT frameshift of ORF1 gene product" FT /note="ribosomal slippage" FT /db_xref="GOA:Q91L47" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q91L47" FT /protein_id="AAK66841.1" FT /translation="SADSXPGKRAKWRRPLKNTGXHPAQARRIYKRVAQQHRLAVDSKD FT RPEFHCNEGGGETAASGPEQTAAERREEVAQKTQDLEHFFQAAYKWEESTSDIPGFRKC FT GKLPALYHPPKPKSTQWGERIISEHPEMASKVAGFGWPSFGAQAEETSLRLQAARWLKR FT AESAEKPTEKQRKLVIDRVVKAYEPCRTNAPHTSSSDSLIWSDFLKDFKEAVNSLELDA FT GIGLPYKLLHKDTHRQMVEDPKFLPLLTRLTWNRLQKMSQVDFQEMTPEQLVREGLCDP FT IRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQNKRDIALWRAIPSXPGFG FT LSTDREAREFIESLSKTVGCSPAEVIHGWRNKIVPTDCSGFDWSVADWMLEDDMEVRNL FT LTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGVQKSGSYNTSSSNSRIRVMA FT AFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQLEFCSHVFEQEDLAXPLNVN FT KMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLVATLHEWLVPGAATK" FT CDS 2131..2721 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF3" FT /db_xref="GOA:Q91L46" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q91L46" FT /protein_id="AAK66843.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDHKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK" FT CDS 2131..>2835 FT /codon_start=1 FT /transl_except=(pos:2719..2721,aa:OTHER) FT /product="aphid transmission factor" FT /note="ORF5; produced by translational readthrough of the FT stop codon of ORF 3; readthrough occurs at a frequency of FT about 25%" FT /db_xref="GOA:Q91L45" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q91L45" FT /protein_id="AAK66844.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDHKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPTPTPPAPTPAPAPKY FT FGYQGVPNNIVKT" FT CDS 2162..2614 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q91L44" FT /protein_id="AAK66842.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTITKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSKGTPRKSSRPPSSGGKIS" XX SQ Sequence 2835 BP; 795 A; 772 C; 690 G; 572 T; 6 other; cagacattgc tgattacgcc gaggaggtgt atgagaaagc ccttgcagag cctaaagtgt 60 ggaaacctgc cagcggtaaa tactggtggg aaatggctga agaagaggat gattttgtcg 120 ttgaggcaaa gtcacctccc cctgataaac ctgttgagaa cgctacagca aaagagcaga 180 ctccagcttc gactgtcgag aaagctatgg ttgctgatca gccgactcca kaccagggaa 240 acgagccaag tggcgccgac cacttaaaaa caccggaayc caccccgctc aagcaagacg 300 aatctacaaa agagttgctc aacaacatcg tctcgcagtt gattcaaaag atcgacctga 360 gttccattgc aacgagggtg gaggagaaac tgctgcgtca ggcccagaac aaacagcagc 420 agaacggagg gaagaagtcg cccagaaaac gcaagacctc gaacacttct tccaagccgc 480 atacaaatgg gaagagtcca ccagtgacat cccagggttc aggaaatgcg gcaaactccc 540 cgcgctatac catcccccaa aaccgaagag cacacaatgg ggagagcgca tcatctcaga 600 gcacccagaa atggcgtcca aagtcgccgg tttcgggtgg ccctccttcg gcgctcaagc 660 cgaagagaca agtctgagac tccaagcggc acgctggctt aaacgagctg agtcagcgga 720 aaagccgaca gaaaaacaac gcaagctcgt catygatcgt gtggtcaagg catatgaacc 780 gtgtagaacc aatgccccac acaccagctc ctctgacagc ctcatctggt ccgacttctt 840 gaaagatttc aaggaggctg tcaactcact agaactcgat gcagggatag gtctcccata 900 caagcttctt cacaaagaca ctcatcgtca gatggttgaa gaccccaaat tcctgccgct 960 cctgacgcga ttgacctgga accgtttaca gaagatgtcc caggttgact tccaggagat 1020 gactcctgaa caactagtga gagaaggatt gtgcgatccg attcgtttgt tcgtcaaagg 1080 agaaccgcac aagcaggcaa aacttgatga agggcgctac cgcctcatca tgtcagtctc 1140 gctggtagat caactggtag cccgggtttt gtttcaggca caaaacaaaa gagatatagc 1200 tttgtggaga gctatccctt caragcccgg tttcggctta tccacagaca gggaagcacg 1260 cgaattcaty gaatccctgt ccaagacagt agggtgttcc ccagcagaag tcattcatgg 1320 ctggaggaac aagatcgtac ccaccgactg ctccggtttt gactggtcag tcgccgactg 1380 gatgctcgaa gacgacatgg aagtgagaaa tcttctcaca atcaacaaca acgagctaac 1440 ccgccgcctc agggcgtgct ggttgaagtg catcacaaac tccgtgattt gcacatccgg 1500 cggtgtcttg tacgcccaaa ctcatcctgg agtgcaaaaa tctggatctt ataacacgag 1560 ttcatccaat tccaggattc gagtaatggc cgcttttcat tgcggcgcag attgggcgat 1620 agccatggga gacgatgcac ttgagtctcc aaactccaac atcaacgcgt accaaaagtt 1680 ggggttcaaa gtcgaggttg cctcacagct agaattttgc tcacacgtct ttgagcagga 1740 ggacctcgcc akgccgttga acgtaaacaa aatgctttac cgtttgatct ttggatacaa 1800 tccggcctgt ggcaacgcgg aggtattgtg taattacctc caagctgtgg cttctgttct 1860 caacgagctt cgccatgatc cacagctagt tgctaccctc catgagtggc tggttcctgg 1920 cgccgccaca aaataaatac ggagggacac cccgagccac catataggtt gcaagagtgg 1980 aacgggaagt cctatagata agccgcgcga ttctggatta caaacttcta gcgggagttc 2040 tcatcggtgt tctcatcgca atccccctag tgatcatagc ggcttacctg atattcctca 2100 aaatcagtgc acacatccga gcgatagtga atgaatacgg gcgctaaccg ctcacgaagg 2160 aatgtcagaa gacgcgctaa ccgtcgtaga cagactcggc cagtggtcgt ggtccgggct 2220 cccccaggac ctagacgagt acgacgacgt agagcacgtg ttggaggaaa cgctgtgcga 2280 ggaccgggag gaagaagcaa ccgggatgtt ctcactttca cggttgacga tcacaaagcc 2340 aactcaaccg ggatcctcaa attcggaccg aacttatctc agtacgcagc gttcaacaat 2400 ggcttactca aagcctacca tgagtataaa atcacaagtc tcactattca gtataactca 2460 tgctcctccg acgcaactcc aggtgcaatc gcacttgaag tggatacatc ctgctcccaa 2520 acaacaacag gctccaagat tactagcttc cccgtcaaaa ggaacgccaa gaaagtcttc 2580 ccggccccct tcatcagggg gaaagatttc atgactacgt cagctgacca gttttggttg 2640 ctgtacaaag ggaatggaga ctcgagccta gcaggacaat tcgtctgccg atttgaatgc 2700 cttttccaga atcccaaata ggtaggcgac gctcccccaa cacccactcc aacaccaacc 2760 ccacccgctc cgaccccggc accggctccc aagtattttg gataccaagg agtgccgaac 2820 aacatcgtga aaaca 2835 //