ID AF368272; SV 1; linear; genomic RNA; STD; VRL; 7711 BP. XX AC AF368272; XX DT 04-DEC-2001 (Rel. 70, Created) DT 29-MAY-2003 (Rel. 75, Last updated, Version 2) XX DE Blackcurrant reversion virus RNA1, complete sequence. XX KW . XX OS Blackcurrant reversion virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7711 RX DOI; 10.1016/S0168-1702(01)00342-2. RX PUBMED; 11551655. RA Pacot-Hiriart C., Latvala-Kilby S., Lehto K.; RT "Nucleotide sequence of black currant reversion associated nepovirus RNA1"; RL Virus Res. 79(1-2):145-152(2001). XX RN [2] RP 1-7711 RA Lehto K.M., Pacot-Hiriart C., Latvala-Kilby S.; RT ; RL Submitted (05-APR-2001) to the INSDC. RL Plant Physiology and Molecular Biology, University of Turku, Turku RL FIN-20014, Finland XX DR MD5; d4411aacfb1d2ad5b347631d69c2eef8. DR EuropePMC; PMC2861173; 20229114. XX FH Key Location/Qualifiers FH FT source 1..7711 FT /organism="Blackcurrant reversion virus" FT /segment="RNA1" FT /mol_type="genomic RNA" FT /db_xref="taxon:65743" FT CDS 67..6351 FT /codon_start=1 FT /product="polyprotein" FT /note="encodes N-terminal protein, nucleotide binding FT protein, VPg, viral cysteine-like protease, and FT RNA-dependent RNA-polymerase" FT /db_xref="GOA:Q8V5E0" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/Swiss-Prot:Q8V5E0" FT /protein_id="AAL36026.1" FT /translation="MVKIGSDTLAPKQLVLENKYIAACLSKPANFALSFLAQGASLKPS FT VVARAAINGVIACDTTTFQLLAMDGTPLSFAAAAVVVRQFQLAHNRFVKIGLRQFYKEC FT TRRCNAFNLQKAARQSRERRAACKRILASLDADLPCSRSSRRAIVTAHYAGVATAARKS FT ALFRQMRADKRASRALAAAMQPLVLAPPTCARIPYVCPLSSSVEESVSRRSLERCSKRV FT PREHASPRVASEMQPFADRPRLFSRVLLLPLSEITRAFFSRVFVPGSAMYDCATDLAHV FT VLDWWSITPMAHYLAMLDNFLGTPTEESVRQASTNLLEEVEAMRALCRDHRANGVFAWV FT TETAGTIGSTLKTAAVAPFHGAGVALKAVLTPCASATLAWGEKFFQTLKSKFFEFLKPY FT IQHAIYASAEIEKYWAFIHGWATKMWNNVGVELQALGDAAWWAIGITMVCGIVTLVEKL FT LVYLGALNAGGILCSLMLTGLLGAAGLLATGKFAEASSTLVGAMRSLIFTLFGSWKPTE FT ASDGLTCNANALDFPLKVLETVGTGLISAPLGTLQYIGKYGQAMDQIRKGKDAIKEFVG FT FCMDRVADAWDYMTGRKDSFLREIASAAKVDIVYWIKQTQSVLLQAQTIAVTDIVLLDT FT VTHLLYKGQILQLTLAKASRTTSLDYARIVSTLIGELTKIRATCARAGSFDGRRPEPFW FT CYIYGKSHCGKSLFMEDVSRALLKENGHAPNDIYAKNARDSFWSGYLQHACVQVDDLSA FT CVTRPSLESEFLQLVGSKMYSLNMAAVEDKGMSFNSSIIVTTANVYTAPTSAEITDKDA FT YGNRRNVVVQCRAAPDVEFDPRNPSASCEARLVHRTDESPLGNGQWRNCSAVLEDIIHH FT AAIHRNKENLLMENYRERSDTQHPVFVGAKSFIHRLAKEKNFAHIVCDDVLYYHDSYID FT STRVSEGTINIGMEDACIQSVVQWSELVGGVKDLGLLYAFVHAFTEGPCHVDSVEALNS FT EATSCQRDFFQSLSLLERIYMRLVQKQLDRIRANPDFLFSVDIKTRILQSFRHGYDEMI FT THGGKVLAIFAALLLVLLLYSSFFALYQTFVAGTSSALVSAGMITQLSANAGSVCTSAS FT NPSGAASYVSSNIPIHHRWRSNYSERSYALNSNLEDKYLLDLLVWLQIPGDSIISCIRF FT KGRSLLLTKHQALAIPEGARVYCNYYGRGRAVQTIPLSWSYKKVREFADTEAVLFLDAQ FT LSTMPAGREHYFNVPVERLPSVFDMNGVVMKQKRYMTDSDDSLAAFTPNQPVVNTWENS FT RAKLNCERQGINTFAYGGNYRNELPRSISSNCNTSPEDCGAIMTMIFEGRRVVVGMHVA FT SGKNPQGRYMSTACLLPDYHEDLSLNSMLQYTPYDGICKEGYRQIGNIENIGARPYTSG FT KTAFVAVPQHLLYSPPVLQEKLPGSAQPVTIQVEVKQPAILSKDDPRIPEGTSYDPLID FT GMAKFSHPMAVLDENVCNEVAQDIVESWHDCFQDLQDVSDEIAINGSTEMDYEPFNLQS FT SEGYPYVTQRKPGESGKIRFFEMDPYTGLKSLIPNTLPAMRYEALQRDCFTSVPEMVCI FT ETPKDECLPLRKICIKPKTRLFSILPLEFNLLLRKKFLHFSSSLQMHRDTLPTQVGVNP FT YSREWGELLQRLRAQSSVAINCDYASFDGLLTGQILEKIGTMINKMYIGSEASKIQRLN FT LLMSIVNRKSICGARVYEVRAGIPSGCALTVLLNSIFNEFLIRFVWRTTIIGVPRERFS FT QYVTLLIYGDDNLIAVHPDYLPHFNGEIIRTRLADVNVIITDGSDKTAEKIEEKPLVQL FT DFLKRRFRKLNDGTVYAPLDLASVYTSLQNVTMGAGSIHIALQNNVHNALLELYLHGNE FT TWFNHLRDFYRKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQMFDVPVDGGRLRAMMA FT NQGEAAFSTHLGREIYICGPKWCVSDPEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVG FT RLPSQDWVTKFKSSAHRVTAEIRKAHASGKAIYFRDDPPYVANWCAAIGFAQGLGYDYK FT SMINLYHDVSVPGSDALYFYFEQRARRALPEPYIPPHLRTRVR" XX SQ Sequence 7711 BP; 1890 A; 1662 C; 1859 G; 2300 T; 0 other; tttcaaaagc tctttcctag aacttttgcc acctctttct ccttatcttc tcttcttgat 60 tttacaatgg tgaaaatagg ttccgatacc cttgctccta agcagttggt tcttgagaac 120 aaatacattg ctgcgtgcct ttctaagcca gcaaatttcg ctctttcttt ccttgctcag 180 ggtgcctccc tgaagcctag tgtggtcgct cgtgcagcca tcaatggtgt cattgcctgt 240 gacaccacca ccttccaact cctggcgatg gatgggactc ccctatcttt cgccgctgca 300 gcggttgtgg tgcgccaatt tcaattggcc cacaaccgct ttgttaagat tggcttgcgc 360 caattttaca aggagtgcac aaggcgctgc aacgccttca accttcagaa agctgctcgc 420 cagagcagag aacgtagagc cgcctgcaag cggattcttg cgtccttgga tgcagacctg 480 ccatgtagca ggtcttctcg aagggccata gtgacggccc attatgctgg agtcgcaact 540 gcggctcgga agagtgctct cttccgccaa atgcgcgcag acaagcgcgc atctagggct 600 ttggcagctg ccatgcagcc cttggttctg gctcctccca cctgtgcacg cataccttat 660 gtgtgcccac tttcctcttc tgtggaggaa agtgtttctc gacgctctct tgagcgttgt 720 tccaagcgtg ttccacgaga acacgcctct ccccgggttg cgtctgaaat gcaacccttt 780 gctgatcgcc cccggctttt ctcccgggtg ttgctcctcc ctctctcaga gataacacgg 840 gcgtttttct ctcgtgtttt tgttcctggg agtgccatgt atgattgtgc tactgatctt 900 gcacatgttg tacttgattg gtggtccatc acccccatgg cacattactt ggccatgcta 960 gacaattttc ttggcacccc aactgaagag agtgtgcgac aggcttctac aaatctttta 1020 gaggaagttg aagccatgcg tgctctttgt agagatcacc gtgcgaacgg tgtgtttgct 1080 tgggtgacag aaactgccgg tacaattggt agcaccctaa agactgctgc tgtagctcct 1140 ttccatggag ctggcgttgc gcttaaggcg gttttaactc cttgtgcttc agctacttta 1200 gcgtgggggg aaaaattttt ccagaccctc aaatccaaat tttttgagtt cctgaaaccc 1260 tacatccaac atgctattta tgccagtgct gaaattgaaa aatactgggc atttatacat 1320 ggttgggcca ccaagatgtg gaacaatgtt ggagtagagt tgcaggcgct tggtgatgct 1380 gcttggtggg ccattggaat taccatggtt tgtggtattg ttacccttgt tgaaaagctc 1440 ttggtttatc ttggcgcttt gaatgcaggc ggtatattgt gctctttaat gctcactggt 1500 cttctaggtg ctgcaggtct attggcgact gggaagtttg ctgaggccag tagtactctt 1560 gttggcgcca tgcgttcttt gatattcaca ttatttggat catggaaacc aacggaggcc 1620 agtgatggac ttacttgtaa tgccaatgct ctagatttcc cattgaaagt tttggaaact 1680 gtaggtacag ggttgatatc tgctccactc ggtacactac agtacattgg gaaatatggg 1740 caagctatgg accaaatccg aaagggcaag gatgccatca aagagtttgt tggattctgc 1800 atggatcgtg tagccgatgc ttgggattat atgacaggta gaaaggattc ctttctgcgt 1860 gaaattgcgt ccgctgcaaa ggttgatatt gtgtattgga tcaaacaaac acagagtgta 1920 ctactacaag ctcaaacaat agcggttact gacattgtcc ttttggatac agttacccat 1980 ttgttgtaca aagggcaaat actgcaactc actcttgcca aggcttctcg cacaacatct 2040 cttgattatg cgcggattgt aagtacgctc attggtgagc ttacaaaaat acgtgcaaca 2100 tgtgctcgtg ctggaagttt tgatggtcgc cgcccagaac cgttttggtg ctatatctat 2160 ggcaagtccc attgcggcaa atcactattt atggaggacg tttcacgcgc tttgcttaaa 2220 gagaatggtc atgctcctaa tgacatttat gcgaagaatg cgcgtgacag tttttggtcc 2280 ggatatctgc agcacgcttg cgtgcaggtg gatgatctct cggcctgtgt aactcgaccc 2340 tcccttgagt ccgagttttt gcaactggtg ggttcaaaga tgtattccct gaacatggct 2400 gctgttgaag acaagggcat gagttttaat agctcgatta ttgtcacgac agcaaatgtg 2460 tatactgctc ctactagcgc agaaatcact gataaggatg catacggaaa taggcggaat 2520 gtggtggtgc agtgtcgagc tgcgcctgat gttgaatttg atccgcgcaa tccttccgca 2580 agttgtgaag cacgcttagt gcatcgcact gatgagagcc ccctaggaaa tgggcagtgg 2640 agaaactgtt ccgctgtgct tgaggatatc attcaccatg ctgccatcca tcgcaataaa 2700 gaaaatcttc ttatggagaa ctatagggag cggtcggaca cgcagcatcc agtttttgtt 2760 ggggctaaaa gctttatcca tagacttgca aaggaaaaga actttgctca catagtctgt 2820 gatgatgtgc tctattacca cgactcatac attgatagta ctcgcgtcag tgagggtacc 2880 ataaacattg gtatggagga tgcttgtata cagagtgtgg tacagtggag tgaattagtg 2940 ggtggagtga aggaccttgg tcttctctat gcatttgtac atgctttcac agagggacca 3000 tgtcatgtag atagtgttga agctttgaat tctgaagcta cgagctgtca gcgcgatttt 3060 ttccaatcgc tgtcgttgct ggaacgcatt tatatgcggc ttgtacaaaa acagctcgat 3120 agaattcggg cgaatccaga ttttttgttt tctgtagata ttaaaactag aattcttcag 3180 agttttcgtc atgggtatga tgaaatgatt acacatggcg gaaaggtgtt ggccattttt 3240 gcggcccttc ttttggtttt gttactctat tcttccttct ttgctttgta tcagacattt 3300 gttgctggta ctagtagtgc tcttgtgtct gctggtatga taacccaact tagtgcaaat 3360 gctggttcgg tctgcacttc tgcgtcgaat ccttctggag ctgcctcgta tgtatcgagt 3420 aatataccca ttcaccacag gtggcgttct aactattctg agagatcata tgcactcaat 3480 tccaatcttg aggataaata tctccttgat cttctcgtgt ggttacaaat tccaggagat 3540 tcgataatct cgtgtattcg tttcaaggga agaagtttgc tacttaccaa acaccaggcc 3600 ctcgccattc ctgagggggc ccgtgtttat tgcaattact atggccgtgg tcgtgctgtg 3660 caaacaattc ctctatcatg gagttataag aaagtgcgcg aatttgcgga cactgaagcg 3720 gttcttttcc ttgatgccca gctttcgaca atgccagcag ggcgggagca ttatttcaac 3780 gttcctgtag aacgactacc ctcagtattt gacatgaatg gggtcgtaat gaaacagaag 3840 cgttacatga cagactcaga tgatagcctt gcagctttta ctcccaatca acctgttgtc 3900 aatacatggg agaattcgcg tgccaaactc aactgtgagc ggcaaggtat aaacaccttt 3960 gcttatggag gcaactatag aaatgagcta ccacgctcta tttcgtcaaa ctgtaacacc 4020 agtcctgagg attgtggtgc aattatgacc atgatatttg aggggagaag agttgtcgtt 4080 ggcatgcatg ttgcctcagg gaaaaaccct caaggtcgct atatgtccac agcatgtttg 4140 ctcccagatt atcacgagga cttgtcgctg aactccatgc ttcaatatac accatatgat 4200 ggtatttgta aggagggtta ccgacagata ggaaatattg aaaatattgg tgcgcgtcca 4260 tatacgtcag gtaaaactgc gtttgtggcc gtgccccaac atcttttata tagtcctccg 4320 gtgttgcaag agaagttgcc tggtagtgcg caacctgtca cgatacaggt tgaggtgaaa 4380 cagccagcca ttttgtctaa ggatgatcca agaataccag aggggacttc ctatgatcct 4440 ttgattgacg ggatggccaa attttcacat cctatggctg tacttgatga aaatgtgtgc 4500 aatgaagtcg cacaggatat agtcgaatcg tggcatgatt gcttccaaga cttgcaagac 4560 gtctctgacg agattgcgat aaatggttcc actgagatgg actatgagcc cttcaatctt 4620 caatcttcgg agggatatcc ttatgtgact caacgcaaac cgggagaaag tggcaagatc 4680 cgtttttttg aaatggatcc ttacactggg ctcaagagtc tcattcccaa tacactacca 4740 gctatgcgct atgaagcgtt gcagcgggat tgtttcactt ccgttccaga aatggtgtgt 4800 atagagacgc ccaaagatga gtgcttgcct ctgcgtaaaa tttgtatcaa gcccaaaaca 4860 aggctgttct caatcttgcc actggagttt aatctccttc tccggaaaaa atttctccac 4920 ttctcctcat cgctccagat gcatcgtgac actctcccca cccaggtagg tgtgaatcca 4980 tattcgaggg agtggggtga gcttttgcaa cgcttgcgtg cccagagcag cgttgctata 5040 aattgtgatt acgccagttt tgatggtctg ttgactggtc aaatactgga gaaaataggt 5100 accatgatca acaagatgta tatagggtct gaagcctcta aaattcaacg tttaaatttg 5160 ctcatgtcta ttgtgaatag aaagagcata tgtggtgcgc gagtttatga ggtgagagcg 5220 ggaatccctt caggatgtgc gctgacagtg ctgttgaatt ccatatttaa tgagtttttg 5280 attcgttttg tatggagaac aaccattatt ggtgttcctc gggagcggtt ttcccaatat 5340 gtgacattgt tgatctatgg tgatgataat ctcatagcag tacaccccga ttatctacct 5400 cattttaatg gggaaattat ccggacgcgt cttgctgacg ttaatgtcat tatcacagat 5460 ggtagtgata agactgccga gaaaatcgag gaaaagccat tggttcagct tgactttctg 5520 aaacgtcgat ttaggaagtt gaacgatggt actgtctatg ccccacttga tttagcatcg 5580 gtttacacca gtctccaaaa tgttaccatg ggagctggct ctatacatat tgcgttgcaa 5640 aacaacgtcc ataatgcgct cctagagtta tatttacacg gtaatgagac atggtttaac 5700 cacttaagag atttttatag gaagtctcat gcgtgggtta accttccgag ttggcgtgag 5760 gcttttgcat ttcaccaggg acaaatttca ggagtcacac catggactcc ctatcaaatg 5820 tttgacgtcc ctgttgatgg tgggcgcctt agagctatga tggctaatca aggggaagcg 5880 gctttttcca cacacttggg tagagaaata tatatctgcg gcccgaagtg gtgtgtttct 5940 gacccagaac atcaatttgt ggtgtctact actcctttga ggagcgcaga ccggggcagt 6000 ggtatccacc gggctattga atatccctgt aacggtgtgg gaagactgcc ttcacaagat 6060 tgggtcacca aatttaagag ctccgcgcat agagtaacag ctgaaatcag gaaagcgcat 6120 gcaagtggaa aggcgatata ttttcgcgat gacccaccgt atgttgctaa ctggtgtgca 6180 gctattggat ttgcacaggg tttgggttat gattataaat ctatgattaa tctgtatcat 6240 gatgtatctg tgccaggatc tgatgctctt tatttctatt ttgagcaacg ggctcggcgt 6300 gctttgcccg aaccatatat ccccccccat ctacgcacgc gtgttaggta gcccaatagt 6360 gggttttata ggtaaatagc tagtatctca ctactcggat tcccctctgc cgtcatagag 6420 gggtttcaag ggatgtcatc atcagcgttg gttatggcca cgatgtgaat catggagtaa 6480 cgcaccatga gtcccccgat tattcggtcc caagagacta cacttgggtt ggaaatgatg 6540 gtaaaccatc cgtatgggtc tatgctcata tgttaagagt tgtcttatca tatatggctt 6600 ctacataagg tcggtacccc tgaaataggg atcctgttcg cgtgcgtggt tgtagaagtg 6660 ctaagtgtgg ttacaacatt aatatgactt gggagacaaa gtctcatcca ccttggaacc 6720 gtacagggat ataactcaaa gcggaatggt agtgatctac ttgccctatc agtagggatg 6780 ggaacgctca ttattagcaa acccctaccc tgaacattag gagcctcagc aatatgaggc 6840 agaagactaa ggagaaagct cctctggatg tgtaattcat ctactcgaga tgggagtcat 6900 gccatcgtgt tattttattt tcttgcattg tatttcaatt ccaagaaagt ttctggatct 6960 aaaccagacc caggtgggtg gaaccttctg cgtctacccg gtttggtatt ttacgattaa 7020 aatacccagg tctactgctt ccgagcctga ttaaaatctt aaagcggcca tcgttcagta 7080 cttgctggca tggtgacatg agtgatgatg ctttgtgaat catcgaatag tttcttcgtt 7140 tctatttctg ggaaatcctt ttggcgagtg cccatgaaaa taatgaagcg tctagcgcac 7200 gatatagtgc tatctctgct ccaggagatt gagctggaaa tatagtcaat cactttgtga 7260 ttaaggtatt tctggatggg cccgttgcga agggttttcg ctcaaggttc acatgactgt 7320 aaattgtaag tgtactcaag atgtagctag tctaggcaac tagttacatt ggatgaggtc 7380 ccgattgata cggggggata attaatccca gcttacggtg tgtgccgact tgtatggaag 7440 tgtccatacc gcattttgct tgtttttaga cataaacaag tactctttac tgcgtgtaat 7500 acgctggtgt ctcattttat actagcgttg cagcgctagg actacctaag acaaccgtac 7560 tatacgtttg ctttatttat ttttgtttac tcctgtttag caggtcgtgc cttcagtaag 7620 cacacaaaaa tattttcatt tttaggtttt ggttaagagt cattttattg agcacttttc 7680 ttttagtgaa tagagtctga aatgtccttt c 7711 //