ID AF357836; SV 1; linear; genomic DNA; STD; VRL; 7458 BP. XX AC AF357836; XX DT 28-NOV-2002 (Rel. 73, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Taro bacilliform virus complete genome. XX KW . XX OS Taro bacilliform virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7458 RX DOI; 10.1007/s00705-002-0969-1. RX PUBMED; 12721801. RA Yang I.C., Hafner G.J., Dale J.L., Harding R.M.; RT "Genomic characterisation of taro bacilliform virus"; RL Arch. Virol. 148(5):937-949(2003). XX RN [2] RP 1-7458 RA Yang I.C., Hafner G.J., Liew S.C., Dale J.L., Harding R.M.; RT ; RL Submitted (08-MAR-2001) to the INSDC. RL School of Life Sciences, Queensland University of Technology, GPO Box 2434, RL Brisbane, QLD 4001, Australia XX DR MD5; 1c2dcf586f7c8e46ffd229248a3ce5e6. DR EuropePMC; PMC4974523; 27399761. DR EuropePMC; PMC5537673; 28696406. XX FH Key Location/Qualifiers FH FT source 1..7458 FT /organism="Taro bacilliform virus" FT /mol_type="genomic DNA" FT /country="Papua New Guinea" FT /db_xref="taxon:178354" FT primer_bind 1..17 FT /note="methionine tRNA binding site for minus strand FT synthesis" FT CDS 350..790 FT /codon_start=1 FT /product="unknown" FT /note="ORF1" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:Q8BEM1" FT /protein_id="AAN75638.1" FT /translation="MAKKFEAAIKDWYDNSRRADLSYLDLATTTKPSASQLAHNLQVIF FT DRLSLHSSVSIKEHYEVVSKLHSLEKSIEELKSELTTVKRALTSIQKEVFTHKPLTAQE FT VQTLAQSLIKEPKQIEQQAVFLLKELKEQTAKIQALLHELKS" FT CDS 790..1224 FT /codon_start=1 FT /product="unknown" FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:Q8BEM0" FT /protein_id="AAN75639.1" FT /translation="MSVPNSTYPGYIKSLEETKVLGDPSVGFSEIPTTAIGTATGFSTL FT YKQNNTIINLLISLHKKVDSLSKKTDVDELATELSKLTIKDTPKVKAKTPLYVFKSPRL FT ILEEERYKIGLPPTTTDWTWPVGHPFAPPPKTSTKASTSS" FT CDS 1227..6872 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF3; cleavage products: putative movement protein, FT coat protein, aspartic protease, reverse transcriptase and FT ribonuclease H" FT /db_xref="GOA:Q8BEL9" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR008181" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR029054" FT /db_xref="InterPro:IPR033704" FT /db_xref="InterPro:IPR036157" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:Q8BEL9" FT /protein_id="AAN75640.1" FT /translation="MSLAVRDRGSNPSTSSTVPSQQDQIRDYRNMQRVRHTAERAARRI FT FPGRFNRTLESQINPEAEIRLSQQRRAAMVPAEVLYNTSPSTRNQKVYQHYSEERILCT FT GQNQQLNLPFINESSYRALRESGQQHLHIGLIMIRVHPLHRRNAGTTALIVPRDIRWND FT DRSIIGTMEIDLSAGSQIVYIAPNIMLSVEDFYRNIQLAIQTQGYENWNSAESNLLISR FT ALIGRLTNDSFTGFQYNISNVAEYLHSHGVQAIEGQAHPRTLGNRWILQAPAPPRSLVP FT QNVETTTLLDGNVSIRFSNYHQAPVNDTQDNSHPDIQEDENQFIGFLSDLGEEYELEYP FT SFTPVHADEFIFIIINGEEIPDDFVSSFCSNFSPPPIPEPEPTAIEETAFTLEEQFNDL FT DYPTLISMEKQLVQSSVTSAYNPPTEPLMGQVVYPPASAPRPQAETSSTSERFKNFRAK FT PYSTPTIFLPPAYNQQGAILVLPDDIGLYEDTISRWESITLNMMNEKVWPSNEAKAKYM FT ENLLGEMEKKTWIQWRTTYVSEYDALVQQSDETQNLLSQVRRIFLLQDPYQGSTAEQDQ FT AYNDLERISCDNIKDLIPYLIQFRNLAAKSGRLFLGPELSEKLFRKMPPLIGKEIETAF FT IAKHGNANITVMPRIHFAYHYLAELCKKAALQRSLKDLSFCNQIPLPGIYTKGNKKFGL FT RKARTYKGKPHPTHVRVFKKAKYQRTKKCKCFICGEPGHFARECTKQRGNIVRATVHQE FT LAIPDNFDVVSVDADESDSSGIYSYSENEAPLQEVNSFIHDENIFFLSDADEFESPQQH FT LHETVNMLQSRSAYLPQVAVGEEKLNCSHIWLQDVDIPSDKHKCHTCRRDTQKHYRLEC FT QKCKFLVCSLCTIPYLGITMQFRQKQKSQPENPNLVRELLEHAIFLEEKCKNQELLSET FT QIERIVSSEKQVKFYGILPTKKSNKSAGYDLQSNIDIEIPPGKCTVISTGTFLQMPDNM FT YGRLVERTSLAIQGITVQGGVIDPDFTGEIQIVLFNHNTAPYPVKKTYRLAQIIFEKFY FT TPIFIQEPFTSTQQGSSNFGSTAKPLQITENIEVMSETVANQVAKSSVLPRLYSIQAHI FT HIAPDIVISTTAIIDTGATVCCISEKIVPEAAKEQLNYKVNISGISSQQQIQHRLKRGT FT LEIASNKYALPLCYIIELNDKDDFSMILGCNFFKHMGGGMRFEGPHVTFYKGITTLSTS FT YANTGIDTEHEQITSTTSQSFKERFSPLMNELKAAGYIGEDPLKHWSKNKVTCKLDLKN FT TEITIQDKPLRHITPALEQSYGRHVNALLMLKVIQPSKSRHRTMAFLVNSGTTVTADGK FT EIKGKERMVFNYKALNDNTYKDQYSLPNIQLILKKVINSTIYSKFDLKSGFHQVAMDPD FT SVEWTAFLVPQGLYEWLAMPFGLKNAPAVFQRKMDAVFKGCEKFLAVYIDDILVFSNNE FT EDHAKHLVIMLQRCKEHGLVLSPTKMNIAVREVNFLGATIGSRKVKLQENIIKKILDFD FT TEKLQSKKGLRSFLGILNYARNHIPNLGKIAGPLYSKTSIYGDIRFSASDWKLINEIKA FT IVEKLPPLDYPPEQAYIIIESDGCMEGWGAICKWKLAEYDPKSSEQICAYASGKFSPIK FT STIDAEITAAMEGLEAFKIHYLDKQKITLRTDCQAIISFCNKTSVNKPSRVRWLKFIDY FT ITNTGIDVKFEHIDAKNNVLADTLSRLVNTLQDLPWLDEPHQDQTVSLMQEIEDAPLEI FT KQRSLTCLQRLICRSFMEDSTEEAIHFLEDDKIEPTAESSTPITLDEFSRKRFQEHTDL FT LEEFQLTLLQINLLEASLHERLMKCQSYATRDNFWGDWLPEARRDLLQIQLAKEIIEKV FT REKLHSI" XX SQ Sequence 7458 BP; 2437 A; 1589 C; 1340 G; 2092 T; 0 other; tggtatcaga gctatggtga tgttttctat ggctatggca gcgtaaactt cttctgctca 60 agagggaagt ctaccatgtc ttttatttgc tgatgcaact tcatttaatt tgcctatatt 120 ttgtttgata tatctcatta tttgtaagcc tcgtacttac agtacagacc gataacataa 180 ggtaagctaa ggtagcaggc aaaagaggga acaaagtagc cgcaggagaa aggcgaagaa 240 gtaccgtgag tcttctaccc gaaacttact aagtgttatt tctatctggg atagtttagg 300 tcttggaaaa taatgcgacc ttacaattat atgatttata tcacatttta tggcaaagaa 360 atttgaagca gctattaaag actggtatga taactctcga cgagcagatc tttcctatct 420 tgacctagcc accactacaa aaccttctgc atcacaatta gctcataatc tacaagtcat 480 ttttgataga ttatccttac attcttcagt ctccattaag gaacattacg aagtagttag 540 caaacttcat tctttggaaa aatctataga agaattaaag tctgaattga ctacggtcaa 600 aagggcttta acttctatcc aaaaagaagt tttcacccac aaacccctca cagcacagga 660 agtgcaaacc cttgcacaaa gtctgatcaa agaacctaag caaatagaac agcaggccgt 720 atttcttcta aaggagctta aagaacaaac agcaaaaatt caagctttgc tccacgagct 780 taaaagttga tgtctgtacc taattccaca tacccagggt acatcaaaag tttagaagaa 840 acaaaagtct taggagatcc atctgtagga ttctctgaaa ttcctaccac tgctatcgga 900 accgctacag gtttttcaac tctttataag cagaacaata caatcatcaa tctgcttata 960 tctcttcata aaaaggttga tagcctctcc aaaaagacag acgtcgacga gttagccact 1020 gagttgtcca aactcacaat caaggatacc ccaaaggtta aggctaaaac tcctctatac 1080 gtcttcaaga gtccccgtct tatcctcgaa gaggaaagat ataaaatcgg ccttcctcct 1140 accactaccg attggacttg gcctgtagga catccttttg ctcctccacc aaaaacatcc 1200 acaaaggcat ccacctcttc ttaaagatgt ctttagcagt tcgtgatcgt ggttccaacc 1260 cttccacctc ttctacagtc cctagtcagc aggaccagat tcgggattat agaaacatgc 1320 aaagagttcg tcatacagcg gaaagagcag caaggagaat cttccctgga agattcaata 1380 gaactctgga atcacaaatc aatccagagg cagaaatccg tctttctcaa caaagacgag 1440 cagcaatggt cccagcagaa gtattataca atacttctcc atcaacaaga aatcagaaag 1500 tgtatcagca ctattctgaa gaaagaattc tttgtacagg acaaaatcag caattaaatt 1560 tgccatttat taatgaatct tcttacagag ccctcagaga atcaggtcaa cagcatcttc 1620 acataggcct gatcatgatt cgtgtacatc ctcttcatcg gcgaaatgca ggaacgacag 1680 ctcttattgt ccctcgagac ataagatgga atgatgacag atctatcatt ggcaccatgg 1740 agatagatct cagcgccgga tcccaaattg tttatattgc cccaaatatc atgctatctg 1800 ttgaagattt ttatcgcaac atacaacttg cgattcaaac tcagggctat gaaaactgga 1860 actctgccga gagtaacttg ctcatctctc gcgctcttat tggtcgtctg acaaacgaca 1920 gttttacagg attccagtac aatatctcta atgttgctga gtacttgcac agtcatggtg 1980 tgcaagctat tgaaggacaa gctcatccaa gaaccctcgg caatcgatgg atcctacaag 2040 caccagcacc accaaggtct ctcgttccac aaaacgtgga gaccaccact cttctggatg 2100 gtaatgtgtc tatacgtttc tccaattacc atcaagcacc agttaatgat actcaggata 2160 attctcatcc tgatatccaa gaagacgaaa accaattcat tggttttctt tctgatttgg 2220 gggaagaata tgaattggag tatccttctt tcactccagt tcatgcagat gaattcattt 2280 ttataatcat taatggggaa gaaattcccg atgattttgt ctcatctttt tgttccaatt 2340 tctctcctcc accaattcca gaaccagaac ccacagccat tgaagaaaca gcttttactt 2400 tggaagaaca attcaatgac ctggactatc ctaccctcat ttcaatggaa aaacaattag 2460 tccagtcttc agttacttca gcttacaacc cacccacaga acctcttatg ggtcaggtag 2520 tctatccacc agcatctgca cctagaccac aagctgaaac ttcttcaacc tctgaaagat 2580 tcaaaaattt cagagcaaag ccatatagta ccccgactat tttcctacct ccagcataca 2640 atcaacaagg ggctatatta gttcttcctg atgacattgg cttatatgaa gataccattt 2700 ctcgttggga gtccattact ctcaacatga tgaatgaaaa ggtttggcca tcaaatgaag 2760 caaaggccaa atatatggaa aatctcttag gagaaatgga gaagaagaca tggatacaat 2820 ggaggaccac atatgtatcc gaatatgatg ctttggtcca acaaagtgat gaaacacaga 2880 acctcctgtc tcaggtaagg aggatatttc tgctacaaga cccatatcaa ggatcaactg 2940 cggaacaaga tcaggcatat aatgatcttg aaagaatttc ttgtgataat attaaggatt 3000 taattcctta tctgattcag ttccgcaatt tagctgcaaa atctggacgc ttgttcttag 3060 gtccagaatt atctgaaaaa ttattcagaa aaatgccgcc tctaataggc aaagaaattg 3120 aaacagcatt catagcaaag catggtaatg caaacatcac tgttatgcct cgcattcatt 3180 ttgcttacca ttatcttgct gaattatgta aaaaggcagc attacagaga tcattgaagg 3240 atctcagctt ctgcaaccag attcctctcc caggaatcta tacaaaaggc aacaagaagt 3300 ttggtcttcg aaaggccaga acatacaaag gaaaaccaca tccaacacat gtacgggtat 3360 tcaaaaaggc aaaataccag cgtacaaaga agtgcaaatg ctttatatgt ggtgaaccag 3420 gacattttgc tcgagaatgc acaaagcaaa gaggaaatat tgtacgagca acagtacatc 3480 aagaactggc cataccagat aattttgatg ttgtttctgt ggatgcagat gaatctgaca 3540 gctctggcat ctacagttat tcggaaaatg aagctcctct gcaagaagta aattctttca 3600 ttcatgatga aaatatcttt ttcctatctg atgcagacga gtttgaaagc ccacaacagc 3660 atcttcatga aacggtaaat atgcttcaat ctagatctgc ttatttacct caagtagctg 3720 ttggagaaga aaaattgaat tgtagtcaca tttggctaca agatgttgat attccatctg 3780 ataagcacaa atgccacaca tgtagaagag acactcagaa acattacaga ctggaatgtc 3840 aaaaatgcaa attcttggtt tgctcactat gcacaattcc atatctcgga atcaccatgc 3900 aattcaggca aaagcaaaaa tctcagcctg aaaacccaaa cttagtccga gaattgttag 3960 aacatgccat ttttctagaa gaaaaatgca aaaatcaaga attactgtca gaaactcaga 4020 tagaaaggat agtcagttct gaaaaacaag tcaaatttta tggcatcctt cctacaaaaa 4080 agtccaacaa atctgctggg tatgacttac aatccaacat tgatatagaa atcccgccag 4140 gaaaatgtac agtcatttct actggaacct ttctacaaat gcctgacaac atgtatggta 4200 gacttgtaga aagaacatct ttggcaatac aggggattac agtacaagga ggagtcattg 4260 acccagactt cacaggagaa atacagattg ttctcttcaa tcataatact gctccttatc 4320 ctgtgaagaa aacttacaga ttggctcaaa ttatctttga gaaattttat actccaatct 4380 tcattcaaga acctttcact tcaactcaac aaggttcttc aaattttggc agtacagcta 4440 aacctctaca aatcacagaa aatatagagg ttatgtctga aacagttgca aatcaggttg 4500 caaaatctag tgtgctacca cgattatatt ccattcaagc acatattcat attgcaccag 4560 atattgttat ttctacaact gccatcattg atacaggagc aacagtctgt tgtatatctg 4620 aaaagatagt accagaagca gccaaagaac agctcaatta caaagttaac atttctggta 4680 tttcatctca acagcaaatt cagcatagac tgaaaagagg tacattagaa attgcatcaa 4740 ataaatatgc tctaccattg tgttatatca ttgaactcaa tgataaagat gatttttcta 4800 tgattcttgg atgcaatttc tttaaacata tggggggagg aatgaggttt gaaggacctc 4860 atgttacttt ttacaaagga attactacct tgagcacctc atatgcaaat actggtatcg 4920 atactgaaca tgaacaaatt accagtacaa cctctcagtc ttttaaagaa agattttctc 4980 ccttaatgaa tgaacttaaa gcagcaggct acattggaga agatcctctc aaacattggt 5040 ctaaaaacaa agtcacatgc aaattagacc tgaagaatac agagattact attcaggata 5100 agcccttaag acacatcaca cctgctctgg aacaatcata tggtcgtcat gttaatgctc 5160 tactcatgct taaggttatt caaccttcca aaagtagaca cagaacaatg gctttcctag 5220 taaactctgg caccactgtt acagctgatg gaaaagaaat caaaggtaaa gagcgtatgg 5280 tctttaatta caaagccctc aatgacaaca cctacaaaga ccaatactca ttaccaaata 5340 ttcagcttat tttgaaaaag gtgatcaata gcactatcta ttctaaattt gatctgaaat 5400 ctggttttca ccaagttgct atggatcccg attctgtgga atggacagct ttcctagttc 5460 cacaaggttt atatgaatgg ctggcaatgc cttttggcct caaaaatgct ccagccgtat 5520 ttcaaagaaa aatggatgca gtattcaaag ggtgtgaaaa attcctcgca gtctatattg 5580 atgatattct ggtattttca aacaatgagg aagatcatgc aaaacacctg gtcatcatgc 5640 ttcagcggtg taaagaacat ggtcttgttc tttcacctac aaaaatgaat attgcagtta 5700 gagaagttaa ttttcttgga gccactattg gcagcagaaa agttaaactc caagaaaata 5760 ttatcaagaa gatccttgac tttgatacag agaaacttca atcaaaaaag ggtcttcgtt 5820 catttctggg aattcttaac tatgcccgaa atcatattcc aaatctcggg aaaatagccg 5880 gacctctcta ttccaaaact tccatatatg gtgatatcag attttcagca tctgattgga 5940 agttaatcaa tgaaatcaag gctattgttg agaagctccc accacttgat tatcctccag 6000 aacaagccta catcattatt gaatctgatg gttgtatgga aggatggggc gctatttgta 6060 aatggaagct cgcagaatat gaccccaagt caagtgaaca aatttgtgcg tatgctagtg 6120 gtaaattctc tccaatcaaa tccactatcg acgcagaaat tactgccgcc atggaagggt 6180 tagaagcatt caagatccat tacttggata aacaaaaaat aaccctccgc actgattgcc 6240 aggcaatcat ctcattctgc aacaagactt cagtcaacaa gccttcacgg gttagatggt 6300 tgaagttcat tgattatatt actaacactg gaattgatgt taaatttgaa catattgatg 6360 ctaaaaataa tgtcttagct gacactctgt ccaggttagt taacactttg caggatttgc 6420 catggctaga tgaacctcat caggatcaaa cagtctccct gatgcaggaa attgaagatg 6480 cacctcttga aatcaagcag cgttctttaa cctgcttaca gagactgatc tgtagaagct 6540 tcatggaaga ttctacagaa gaagctattc acttcctcga agatgataag atcgagccaa 6600 cagctgagtc atcaacccca attactttgg atgaattttc aagaaaaaga ttccaagaac 6660 atacagatct cttagaagaa tttcaattaa ctttgcttca aattaatctt cttgaagcat 6720 ctcttcatga acgattaatg aaatgccaaa gttatgcaac gagagataat ttctggggag 6780 attggctgcc tgaagctcgc agagatcttt tgcaaattca actagccaaa gaaatcatcg 6840 agaaggttcg tgaaaagctt cactctatct agataggatt ctttgtgtgt gagtggcgca 6900 cttgcgcata atgtagtaag gaattattgt acttttacgc tggacgccac taggctccat 6960 gctttctgta atgtcacatc acttttacga attgagcctc ggggagccgt tcgtacaaag 7020 tagatgcttt tctagtcaca tctgactttt ctaaaagcag atgccatcaa ctttattcga 7080 gttgagcctc ggggagccgc tcgtttaaag atgctctttt gaaaatgaca gcgcgtggtg 7140 cgatgtcatt ctcacctttt ctttaatgcg tcggccaccg actgcattat tgagattctc 7200 ttatcccttt gccacctcat cggttgcatt attgggattt cgtatcgagt cgagggacga 7260 ggcctccact actcctataa aaggacctca acccctcaga agaacggcaa gccggaaaca 7320 ccgaacttcc cattcttctc ttgagtcttt cctttgagct tgagcttgtg tgtaatcttt 7380 catagtttct aagtctccga agaacgagca ccgtctcgtg aaggagccga tccttttcca 7440 accacacttt ttctacct 7458 //