Dbfetch
ID AF356697; SV 1; linear; genomic DNA; STD; VRL; 8072 BP. XX AC AF356697; XX DT 14-AUG-2001 (Rel. 68, Created) DT 31-AUG-2025 (Rel. 144, Last updated, Version 7) XX DE Porcine endogenous retrovirus class E clone P14.1, complete genome. XX KW . XX OS Porcine type-C oncovirus OC Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; OC Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; OC Gammaretrovirus porConc. XX RN [1] RP 1-8072 RX PUBMED; 11457988. RA Mang R., Maas J., Chen X., Goudsmit J., van Der Kuyl A.C.; RT "Identification of a novel type C porcine endogenous retrovirus: evidence RT that copy number of endogenous retroviruses increases during host RT inbreeding"; RL J. Gen. Virol. 82(Pt 8):1829-1834(2001). XX RN [2] RP 1-8072 RA Mang R., Maas J., Chen X., Goudsmit J., van der Kuyl A.C.; RT ; RL Submitted (06-MAR-2001) to the INSDC. RL Human Retrovirology, Amsterdam Institute of Viral Genomics, Meibergdreef RL 45, Amsterdam 1105 BA, The Netherlands XX DR MD5; 9f1a6c3018096fc286ca5977145abc5d. XX FH Key Location/Qualifiers FH FT source 1..8072 FT /organism="Porcine type-C oncovirus" FT /mol_type="genomic DNA" FT /clone="P14.1" FT /db_xref="taxon:369960" FT repeat_region 1..434 FT /rpt_type=LONG_TERMINAL_REPEAT FT /note="5'LTR" FT misc_feature 1059..2618 FT /note="similar to exogenous retrovirus gag gene" FT misc_feature 2619..6239 FT /note="similar to exogenous retrovirus pol gene" FT misc_feature 6093..7624 FT /note="similar to exogenous retrovirus env gene" FT repeat_region 7642..8072 FT /rpt_type=LONG_TERMINAL_REPEAT FT /note="3'LTR" XX SQ Sequence 8072 BP; 2277 A; 1976 C; 1901 G; 1918 T; 0 other; tgaaatggag ttttaactaa agaacaaccc ccccccccct tggctaagaa ggcagctgca 60 agcctttcca actgtgctaa tcactatgcc acccttcttg taataacata acaactgtgt 120 gctctctgtc caagccagca gccctgctaa ttaggtaccc agcattgctt atcagttctg 180 cttctgtaac cttgcttgct caatttctta gggaggaaca ctgtctgctt ggggatgggg 240 gaggtccagg atgcttacat gggaaaatca agaccttgta gtgtataaaa gttactgaga 300 acaaagacct ggtgctcaga ctctggaggt gactcctctg agcccacacc agtgctgaat 360 aaaccttgct tttccatatc tctgagtgct gtttgtctcc ttctgttgcc acagtttttg 420 tggtttctgc aacattttgg tgcattggct gggaagccga caaccgagct ggcctcttgt 480 gccaccgttg tctgggaact gggggaggcc acggtcaccg gcctggtgac aggtggatag 540 cacacaccgg ccattttgcc ggatccagac cctcacttgg gccatggcct tggccacacc 600 gcttcccgaa tggactcaga aggagagtgg aaacaggttc ctggacagga cgtcagactg 660 gtgagtgccc cggggacatc tgcccaagtc aggacccacc atatggtgaa ggagagactg 720 atcacctctc agtgaccaaa gggtcactca ggtcagggtt tgctccgttg gcatcgggag 780 gcttgtcaat tctggtgtgt gtgtgtgagt gactggagag aacaagagcc catgctccac 840 catctttgga ctacggagtc agagtgagtc ctaacctgca gttccatggc gaccctcatg 900 cggcttatgg tggccctctt cagggggatc ctgatgttgg ggtttataca gtcccaccta 960 tgctaagagg cgcctgaaat atctcctcca ggggagaggt cagacggacg aagagattgt 1020 tcgtcttgcg tcaccggcac agggtgggac ttcacacaat gggtaaatcg gcttccaagc 1080 ccactgtctt agagcatatg gttaagaatt ttaagaaagg attttctaga gattatggtg 1140 ttaaactgag tcctggaaaa ctgtgtaccc tctgtaccct agagtgaccc tcatttggtg 1200 atggttggcc tccagaaggg accttagatg tgttcacagt tgcagcagta tataatgtta 1260 taacaggaga ccctggacac ccagacccat ttccatatat tgatcaatgg ttggaaatta 1320 cctatttgag gcccccatag gttcggttct gcactacaga ccagggacag tgtaaggtgc 1380 tagtagccca gtccaagaag aaaatcttgt cccaaaaaag gtgccaccta tttatcaagg 1440 ggaacctgag gactcgcccc ctatgccacc atcttatgtg ctgccggccc cacctccagg 1500 agccaaaggt ccccagatgc cagatagccc accaccttct gtttctcctc caccttctgc 1560 ttctgaagtt cccgaggcaa tatcacccct gcagccagtt tctccagaac ctatgagcag 1620 gcgtctccat tcagctcagg cagcagccac tccagcatta caaatgccct tacgggagac 1680 acggggacca cagcaagtca cccccaatgg gaccatacaa gaggggggat gttttttatt 1740 attaccagcc cttttccacc gctgatctcc tcaactggaa acaccgcact ccctcatatt 1800 ctgaaaagct tcaggcactg attgatctct tagaattcat tttccagaca cactgtccca 1860 ccttgataga ctgacagcaa cttcttttta ctctatttga cactgaagag tgctggcgaa 1920 ttgtaacaga agcccaaaaa tggtttcagg ccaatgcagg gggtcaagca gacttggcaa 1980 actgggtgag ggaaaccttc ccagaagaaa acccccactg ggactatgac actgaagaag 2040 ggaaacgtaa ccttgagagg tactggtagg ccttcctaca gggggcaaaa gctggggcta 2100 aaaagcccac taatatagct aagatcagtg agatactaca agagccgaat gaaagcccag 2160 ccaaattcta tgagagacta tgtgaggctt tccgaaccta cactcctttt gatcccgagg 2220 cccctgagaa ccaaagggtg ataaatcaga tatccataaa aagctacaga aattagaagg 2280 ctttgcagga gagaatgcca ctaaactgtt ggaaatagcc aacaaagttt ttattaaccg 2340 agaccaggtg gcccactgtg atgcagaaaa gagaatgaaa caaaaagtga ctcttctggc 2400 agcctccctg tcaaaacttg tgcccccagt gggaccaccc cataggggac aaggcacaag 2460 gccagggaaa aggagtcccc tggaacatga ccaatgtgct tactgcaaag aaaagggaca 2520 ttggaaaaat gaatgcccca accgtcctga gaaaaagacc aaagccccac ctagccggta 2580 ccgatctgag ccactcagca ccaacctgat cggcctagcg gagtctgact ggggggacca 2640 ggctctctcc aactgggccg ctgagagcct atggtcagaa ttcaagtagg gggccacccc 2700 atagacttta tggttgacac aggtgccgaa ctttctgtgg ttacacaacc tgtggctccc 2760 ctctcgggga aagaaaccac cattgttggg gccacaggta accaaaccca caggcccttc 2820 tgcggtcctc gacgatgtcg gttaggaggc catgaagtaa tacatgaatt tctttaccta 2880 actgactgcc cagttcccct gatgggaaaa gacctgctgg ctaaaatggg gacacaaatt 2940 tccttttcta ctgatggatc agcccaactc aaattgacag aaccgccctc tcctttaatc 3000 atggctcttg ctgtaaaaag agaagaggaa tggtgcttgt actcttcccc ttcagaaatg 3060 gggaccattc ccccagaact agagactaaa tacccattgg tttgggctga aggaaaccca 3120 ccaggactgg caaaatgcca cgctcctgtc ttaattgatc taaaacccag agctcaactg 3180 gtaaagctat ggcaatactc aatgcccaga gaagcttgac tgggaatcca ggttcacctg 3240 gataggctgc ttcagcacgg actgttaata aaatgtcagt acccttggaa caccccttta 3300 ctgccaatga aaaaaccggg aacacaggac taccgcccag tacaggactt gagagccata 3360 aatgaagcaa cagtcacatt acacccatcc gtccctaacc catatacact gctagggctg 3420 atcccctcca ctgctgagtg gtttacttgt ctggacttaa aagatgcttt tttctgcctc 3480 cggatgccac ctgccagtca gcccttgttt gcttttgaat ggcagaatac acatacaggg 3540 acaaaggaac agctcacctg gactagactc ccacaaggat tcaaaaactc tcccactctt 3600 tttagcagcg ccttagctgc tgacctggct gaatttcctg gacaaaaact gggctgtgtt 3660 ttgctacatt atgttgacga cctcttacta gctggcacca tggaggctca gtgcctagag 3720 ggaacaagag ctctcttttc cctactgatg gaagcagggt attgggtatc aaagaaaaag 3780 gcacaaatat gtaaaaaaca agtcaagtat ctgggcttca acatcatgca gggccaatga 3840 atgctgggga ctgaaagaaa gcaggcagtt tgtgccattc ctgtccctac catctgccgg 3900 aatgttcgtg agttcctagg ggcagcagaa ttctgctgga tatggatccc caggttttca 3960 gacctggcta ggcctctgta tgaggctcta aaaggagaag aaaaggctcc ccttaaatgg 4020 ggaccaagcc aggagacagc gtttcagaca atcaaaacta aactcactga ggctccagcc 4080 ttgggacttc ctgatgtaac cagagaattt aacctttttg ttcatgagaa aaatggggtg 4140 gctttgggag tcttaacaag aatttgggcc ttggcagagg ccagtggcat atctgtctaa 4200 acaaattgac tcagttgctg ccggatggcc tccctgcctc tgagagctgg cagctaccac 4260 cttgttggtg agagaggttg acaagttgac cctgggacaa aacctcaatg ttaaagtccc 4320 acactcagtt gtaaccctaa tggataccag gggccaccat tggctcacac atgcacgaat 4380 gactcaatat caagggttac tatgtgaaaa tccatgggta aaattggagg ttgtatgaac 4440 tctgaaccca gctacttttc tgccagatga agcggggccc ccagaccata actgcctgga 4500 ggtactagat gaggtgtttt ccagcaggcc tgacttgact gataaaccac tccaaaatcc 4560 tgacctggtt ttatatattg atggcagcag ctttatggag gatggaaaaa ggatggcagg 4620 atatgctgtg gtatctgact taaaagtgat agaagcagag gtgcttcctc aaggctggtc 4680 agcacagaga gcagaattat gggccttaat cagagcactg gagctcagcc aagaccagca 4740 agttaatatc tataccgact catgatatgc ctttgcaact ttacatgtcc atggagcctt 4800 atataaagaa agagggctcc tcactgctga aggaaaagga attaaaaacc aggctgaaat 4860 cttaaagctc ctagaggcag tatgggaacc taaagaagtt gcagttatcc actgtaaagg 4920 ccaccaaaag ggggatgacc cagtaacaaa aggaaaccat agtgctgatg cagcttccag 4980 acaggcagcc cggggacaac agccagacaa acctaaggtc ttgctggccc cagaaatgcc 5040 agctgtcccc aaatattctc cagaggaaga aaaatggata agggaggaag gaggaactaa 5100 aactaaaacg ggatggtggg tcacacggga ccaccgagtt tacattccag aacagctggc 5160 ccacaaacta gtctgccaag aacatgagct aacccacatg gacaaaactg ccttagagac 5220 cctactgggc tggtactatc tcattgctca tcttcctgca ctctgctcct ctgtctccca 5280 aaggtgcata acctgtttac agaataatgc ctgccagggg ccccacagac cagctggggc 5340 acagcactgc agactgtccc catttgagga tatggaagtg gacttcactg aggtcacccc 5400 tagtaaagag tacaaatatt tactaatttt tatctgtact ttttcaggat gggtagaggc 5460 catccctacc tgaactgaaa aggcaaggaa agtaatcaag gcactcctga gaaacattat 5520 tcccagatac ggaatgcctc tgaccatcag gtcagataat ggactggcat tcatggctga 5580 aacagtacaa caggtggcaa aagctttaca gatccgatgg aaactacatt ctgcttattg 5640 ccctcaaagt tcagggaaag tagaatgcat gaaccgaacc cttaaacaga ccctggcaga 5700 gttatgtcag gaaactggct tgccctggat agacatgttg ctggtggccc tcttaaaagt 5760 gagatgctca ccccgagcgg gaataggatt cttgccattt gaaatcttat atgaaaggca 5820 acctccacta atcagtttaa aaggaaacac cagggagttg agagacttgg aattacataa 5880 acaattacaa ggactggggc tcactatttc ttggatatat aaatgggtca cagacagaat 5940 acctgtgtcc ttaggtataa cagtacaccc ccacaagctg ggggaccagg tgtggataaa 6000 ggactggaaa aatgagccct tgaggccagt atggaagggc ccctatactg taattctaac 6060 cacccccacc actcttaaag taacaggaat agatgcttgg atccatcatt ccagagttaa 6120 accagctggc ccagctgaca accgtggaga gtgggagact gccctcgatc cagagacctc 6180 tttgcctgac aatacagaga aggagacgat gatctcaaag ccctgctctg accacataag 6240 cattcgcatt gatggaagag gccttgaccc tggaactgtg ctacatttcc agagaatcac 6300 atttgcactc caagctgcct ctcacagggt ctttcattcc ttttataaag agataagaaa 6360 caccccacct cccgttccgg ccacaactaa gaatttgttc ttagccctgg cagaaaatat 6420 tacacaaact ttcaaggtct cctcttgtta tgtatgtggg ggaacaaaca caggagacca 6480 ctggccttgg caagccagag agctggaccc attagagcct cataatgaga ctacataccc 6540 ccaactcacc aatggggtat ggctcctcag aactgctatt atagggagaa attgtcttgc 6600 gaggtgggga ggacagttta atgtttgagt tggaagccta acatgtttag gcctaaggta 6660 ttataatctg actgcccaaa agactcaatg gtggtcatcc tccaatcgct caaagcccaa 6720 gcctaatccc ttgtctaact tttccctcct tcgacaagca tgggaagata tcagtactaa 6780 tatccattgg cgggcaccaa agggattata ttggatttgt ggaaaaaaat ggcctattcc 6840 atactcccct ccaaattgga ctggggtatg tgtactggga acaatcagat cttccttctt 6900 cctgctcctg ctgtcactag gggagcaact gggagttcct atatacagca cagggtgccc 6960 agagagaccg gagggctgtc caaattggag actggaaagt tgatgaatgg cccccagaac 7020 agataattca atattatgga cctgccacct gggcagagga tggctcttgg agatatcaca 7080 cccctatcta tatgctgaac cgcatcatca gactacaggc agttttggaa cttataacaa 7140 atgacactga aagggccttg actatattgg cccaacaaca aactaaaatg ctcagtgcaa 7200 tctaccaaaa tcgcttggcc ttggattatt tacttgcttc tgaaggaggg ctttgtggaa 7260 aatttaactt aagtaattgc tgtctacaaa tagatgacac cagaaaggtg gtagaagaaa 7320 ttgctgaccg catgactaaa ctagcccatg tacctgtaca aacttggaaa ggatgggatg 7380 cagacagtct ctttggtaaa tggttctctt ggttgggaga aattaagaca atggttggaa 7440 tagtcatggt tatactcgca gggtgcctac ttgttccctg ccttgtacct ctcctgataa 7500 atattataaa aggttttata aaaaccatgg ttgaaagaaa aacagcctcc cacctgctac 7560 ttattagagg ctaccaaagg gttatgactg atgatgatct gtaaagggtg cagatgcacc 7620 ctgaacatca agagggggga atgaaatgaa gttttaacta aagaacaacc cccccccttg 7680 gctaagaagg cagctgcaag cctttccaac tgtgctaatc actatgccac ccttcttgta 7740 ataacataac aactgtgtgc tctctgtcca agccagcagc cctgctaatt aggtacccag 7800 cattgcttat cagttctgct tctgtaacct tgcttgctca atttcttagg gaggaacact 7860 gtctgcttgg ggatggggga ggtccaggat gcttacatgg gaaaatcaag accttgtagt 7920 gtataaaagt tactgagaac aaagacctgg tgctcagact ctggaggtga ctcctctgag 7980 cccacaccag tgctgaataa accttgcttt tccatatctc tgagtgctgt ttgtctcctt 8040 ctgttgccac agtttttgtg gtttctgcaa ca 8072 //