ID AF356189; SV 1; linear; genomic RNA; STD; VRL; 5358 BP. XX AC AF356189; XX DT 29-MAR-2001 (Rel. 67, Created) DT 29-MAR-2001 (Rel. 67, Last updated, Version 1) XX DE Eimeria brunetti RNA virus 1, complete genome. XX KW . XX OS Eimeria brunetti RNA virus 1 OC Viruses; Riboviria; Totiviridae. XX RN [1] RP 1-5358 RA Fraga J.S., Katsuyama A.M., Fernandez S., Madeira A.M.B.N., Briones M.R.S., RA Gruber A.; RT "The genome of the Eimeria brunetti RNA virus 1 is more closely related to RT fungal than to protozoan viruses"; RL Unpublished. XX RN [2] RP 1-5358 RA Gruber A., Fraga J.S., Katsuyama A.M., Fernandez S., Madeira A.M.B.N.; RT ; RL Submitted (05-MAR-2001) to the INSDC. RL Pathology, Faculty of Veterinary Medicine and Zootechny - University of Sao RL Paulo, Av. Prof. Orlando Marques de Paiva 87, Sao Paulo, SP 05508-000, RL Brazil XX DR MD5; 2095b58791a26ba3f1534fab46d83cfa. DR EuropePMC; PMC3597494; 23516364. XX FH Key Location/Qualifiers FH FT source 1..5358 FT /organism="Eimeria brunetti RNA virus 1" FT /mol_type="genomic RNA" FT /note="Eb-RV1" FT /db_xref="taxon:155414" FT 5'UTR 1..357 FT CDS 358..2670 FT /codon_start=1 FT /product="coat protein" FT /note="capsid protein; ORF1" FT /db_xref="GOA:Q98XW9" FT /db_xref="InterPro:IPR008871" FT /db_xref="UniProtKB/TrEMBL:Q98XW9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAK26437.1" FT /translation="MSIGTSNALRTRTNCGRKMDSGYKISCLLGEVVPGGARVEVPTFG FT NYRKYMSRLEMRACTRGLPQSTYCPIQFEVGAAFNLGTCAKNFKRETWLQHVMREGPML FT GCSYATPVEVRKVLKEERFRQVGQAEWLTFNFDAIVCVLGAVAATLTLVPDLSTADWRN FT TSPSVRGLVSVEDLHAANSGGVVYYDPCALGIHAECAKWLMIYAANVCGATVVVPHLTL FT DVNNRPICKDYDGAELRRGLSVLLNILGTYYSMANAGDMYALALMTGVHRVLTVVGHSD FT EGGWLRDVLRQGWWQQPHGGVPRSLPFSSGISVDDGRTLGTFVALVDSIALGTAAAVAH FT CDPLVPVGDNVFPTVFTVDLPEDGELANGVMQRLMARTIADGCAKFSELYATALAKLFR FT LHVNVTELHAAGVLQQMASYFAESGSRHTDMAVCHPFFWIEPTTVLPAGEFGFPAEIYG FT YASLCHATQRRTMPFFEAIEEEGLSDTVVSHWRVRIRSPRTCGYVLYTTNHPKNGLANL FT LLRGFNSSALVLGTKSPEEIRCKKAAKGFVTFADLMWKRGQAKLPHPAEVLNVDGTFTV FT SILHAAITTRHYQKPIEHIPPPEDLSRMYLTLHATRLAYYKAGPANVEPGGVRRLRNMG FT VDAINDMNGVVQNTMLRMSSFPPPSETAPVLNKPGRAFGGAAAAVSERCVEPVRGDAAE FT ESPPRVAQGQAVEATMVHASAPAPQPHRGPGPSDGGGGLGGHRDLVAGVGDATAVAAGA FT VTVPESGSRQTASATQQ" FT CDS 2667..5321 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /function="involved in dsRNA replication" FT /note="ORF2" FT /db_xref="GOA:Q98XW8" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q98XW8" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAK26438.1" FT /translation="MMTELLPRLTPVVAADEMGELYLRTTFPRPPLAGTFNDTGLFPVM FT YAETASLQHAVRRILRHGPLSLTQSECLARSTFTAVGDEAVLCRRAEEAFWDLLLASEW FT PMHVAPVPWLLKHVVTLIARGLKQSLLEHRIPGGWIKHIRNGRSPSKEWLLGYWPRKSH FT PLAGKKANLFLDCVIADFLQNYKCLGPVLEGWMKRTHLLGIYEDQACNIIVYAQAVMLE FT FGFEESLYLATWAVLRAKQAKALSDVLKAMGQNMCAVGRHLCELAVLQGRGVNRLDLLE FT DAERRVSATFNCPIVHVPADALRQCVRDVLRRELRTRVVLPPSDDFFRRRYAWCVGGAH FT NLNGNDHWLPRSLLPQFPAALLWNRRAALNCVERNPLKRWSGHVRVSVAEKVEQGKGRA FT IYSCDTLSYTAFSWLLEAVEKEWASRSVILNPGKGGTLGMMNRIRGAATGGRRQCYLML FT DYSDFNSQHSNEAMRIVIEETLACCDHNEPELAAKLLKSIDDMHIYLRGVHIGRVAGSL FT MSGHRATTYWNSVLNAAYVRYAIGRVAYDTYKPFHVGDDVLILLDSPADAWNVVKKLEH FT IGCTLQRSKQSVGIGGYEFLRVAGSPFTGVGGYVARSVAGLVSGSWVSSVKMAPREALQ FT SLIQQARSIMNRSGNPAAYKLLISSARRTIGIDQQYLEEFLSGNVALAPGPCYRSDRRY FT VARHVEWESSADDPYGGGRLLIGGIEIEKLPNHAARDYVNWAASEVERVGLAMVGRVPW FT RAMALTAYAAMEPSLYGNPSGGVRAAYISPRTVRLIDHYIDAADITTTDSQHGILAQYP FT LLSLLRNYFSMEDLTYLLNFVGRDAGIDARVTAWGGTNEGICVCGLLPYADAAGAASRV FT LGNAIHVSVPVAV" FT misc_feature 2667..2670 FT /note="overlap between ORF1 and ORF2" FT 3'UTR 5322..5358 XX SQ Sequence 5358 BP; 1132 A; 1316 C; 1690 G; 1220 T; 0 other; tgaatgaaaa gcgcgagcgc ggcgtcgtgt cgaccgcttt tctgatcctg ctggttgctg 60 gaccaatacc catcagtagc aggcaggggg agtgcctcga gtcacagtta acgtcggctg 120 tgtcacgacg gtcagctcct agtaaattgc ataggagttc accctgtgta ttcgccctgc 180 ggggtggtac actggaacca cggtccctta gcccagggat agcgccgtgg ggggatcgca 240 tgagggcgta gttagggttc tgctattcag acgtacgcac attaagtgta gtaggccgtc 300 atgtggtggt aagcctaccg ctggtaccgg ggtacagcgc ctacgaccta caagctcatg 360 tcgataggaa cttccaatgc cttgcgcacg agaacgaatt gcggacggaa gatggattcg 420 ggttataaga tctcgtgttt attgggagag gtcgttcccg gtggcgcccg ggtggaggtt 480 ccgacttttg gcaattatcg taaatacatg tcgcgtcttg agatgcgagc ctgcacgcgt 540 ggtctacctc aatcgacgta ctgtcctata cagtttgagg ttggagcagc gtttaatctc 600 ggcacatgtg ccaagaactt taagcgagag acttggcttc agcatgtcat gcgtgagggg 660 cctatgttgg gctgctcgta tgctacaccg gttgaggtca ggaaggtact caaggaggag 720 aggttcaggc aggttggcca ggcagaatgg ctgactttta acttcgacgc cattgtgtgt 780 gtgctgggcg cagtggctgc tacgttgacg ttggtgcctg acctctcaac tgcggattgg 840 cgaaatacga gcccttcagt acggggtctt gtgtcggtgg aagacctcca tgctgccaat 900 tcggggggcg ttgtgtatta tgatccgtgc gctttgggca tccacgcgga gtgcgcaaaa 960 tggctaatga tctacgcggc caacgtgtgc ggagcgaccg ttgtggtgcc gcacttgaca 1020 ctggacgtaa acaatcgccc gatatgcaaa gattatgatg gagcggaact gcgtcggggg 1080 ctttcggtcc tgctcaacat attgggcacg tactactcta tggcaaatgc gggtgatatg 1140 tatgcgttgg ccctgatgac aggggtgcac agagttctga ccgtcgtcgg gcacagtgac 1200 gagggaggtt ggctgcgcga tgtgctgcgt cagggttggt ggcagcaacc acatgggggc 1260 gtgccacgat ctttgccttt cagttcgggc atatctgtgg atgatggccg cactttggga 1320 acattcgttg ctttggtgga cagtatcgct ttaggtacgg cggctgcagt cgcccattgc 1380 gacccgctcg tacctgtggg agacaacgtt tttcctactg tgtttactgt cgacttgcct 1440 gaagacggtg agctggctaa cggtgtcatg cagagattga tggcccgcac gattgctgat 1500 gggtgtgcca agttcagcga actatacgct actgcgctag ctaagctttt tcggctacac 1560 gtcaatgtga ctgagttgca cgctgctggc gtattacagc agatggcaag ttactttgcg 1620 gaaagtggct ccagacacac ggacatggca gtgtgtcacc ccttcttttg gatagagccc 1680 acgacggtgt tgcctgctgg tgagttcggt ttccccgcgg agatctacgg gtatgcaagc 1740 ttgtgtcacg ccacccagcg gcgaaccatg ccgtttttcg aggcgataga agaggagggc 1800 ctcagtgata cagtggtgag tcactggcgc gtacggatac gcagtccgcg cacctgtggg 1860 tacgtacttt acaccacaaa ccatccgaag aacggactgg ccaacttgct gctccgaggt 1920 ttcaacagca gtgcgttggt gctgggtact aaatctcctg aagagatcag atgtaagaag 1980 gcggcaaaag gctttgttac ctttgctgac ttgatgtgga agcgcggaca ggccaaacta 2040 ccgcatccag cagaagttct taatgttgat ggaacgttta ctgtgagtat cttacatgct 2100 gcaataacta cacgccacta ccagaaaccg attgaacaca tacccccacc agaagattta 2160 agtaggatgt atctaacatt acacgctacc agactggctt actataaggc tgggcctgcg 2220 aacgtagagc ccgggggtgt gcgtcggttg cgtaacatgg gtgttgacgc gatcaacgat 2280 atgaacggtg tggtgcagaa cacgatgctg cggatgtcga gttttccccc gccgagtgag 2340 acggcgcccg tgctgaacaa gccaggccgg gcctttggcg gggctgctgc ggccgttagt 2400 gagcggtgtg ttgagccagt gcgcggcgac gcagctgagg agtcgccacc gcgtgtggcg 2460 caaggccaag ccgtagaggc caccatggtt cacgcgagcg caccggcacc gcagccacac 2520 cggggaccgg gtcccagtga cggtggcgga ggtctcgggg gacaccggga cctagtcgcg 2580 ggagtgggtg atgctacagc cgttgcggcg ggggcggtaa cggtacctga gagcggtagc 2640 cggcaaactg cctccgccac acagcaatga tgactgagct gctgccacga ctgacccccg 2700 tcgtggcggc tgacgagatg ggggaactct atttaaggac aacctttccg cggcctccat 2760 tggctgggac ctttaacgac acagggttat tcccagtcat gtacgcggag acagcgagtc 2820 tgcaacacgc ggtccgtcgc atcttacgac acgggccgct gtctttgact cagagcgaat 2880 gcctcgcccg ctcaacattc accgcagtcg gggatgaggc cgtgttgtgt aggcgcgcgg 2940 aggaggcgtt ttgggactta ctgttagcca gcgagtggcc aatgcatgtg gcaccggtgc 3000 catggctgct gaagcatgtt gtgactttga ttgctagggg cctaaaacag tccttgttgg 3060 aacatagaat tccaggcggc tggattaagc atatcagaaa tggacggtct ccaagcaagg 3120 agtggctgct gggctactgg ccacgcaagt cacaccccct ggccggcaag aaagcgaact 3180 tatttttgga ctgtgtgatc gctgacttcc tacagaacta caagtgcctg ggccctgttt 3240 tggagggttg gatgaaacgc actcacttgt tgggtatata tgaagatcag gcgtgcaaca 3300 tcattgttta tgcgcaggcc gttatgctcg aatttggctt cgaggagagc ttgtatctag 3360 ccacatgggc agtattgagg gccaagcaag ctaaagcgtt gtctgatgtt ctgaaggcaa 3420 tgggccagaa catgtgtgcc gttgggcgcc acttatgcga actcgcggtg ttgcagggac 3480 gcggcgtcaa caggctggac ttgcttgagg acgctgagcg ccgggtcagt gcgacattca 3540 actgtcccat agtgcacgtc ccagcggacg cgttgagaca gtgcgttcgt gacgtcctca 3600 ggagagagct gagaacgcgt gtggtgctgc cgcccagcga cgatttcttc cgtcgtcgct 3660 acgcctggtg tgtgggtggc gcacacaatc ttaatggcaa cgatcactgg ttgccgcgct 3720 cgctgctgcc ccagttcccg gctgcgttgc tgtggaaccg cagagctgct ctcaactgcg 3780 tcgaacgtaa cccgctcaag aggtggtcgg ggcacgtgcg ggtgtcggtt gccgagaaag 3840 ttgaacaagg gaagggtcgt gccatttact cgtgtgacac gctaagctat acggcgttta 3900 gttggttgct agaggctgtg gaaaaagaat gggcatcacg ctctgtgata ctgaaccccg 3960 gcaagggtgg caccttaggg atgatgaaca ggatcagagg cgctgcgacc gggggcagac 4020 gtcaatgcta cttgatgctg gattactctg actttaactc ccaacactcg aatgaggcta 4080 tgcggattgt gatagaggag acgttggcct gctgcgacca caacgagcct gagcttgcgg 4140 ccaaattgtt gaagtcgatc gatgacatgc acatctactt gcgaggcgtc catattggca 4200 gagttgccgg ctcactaatg agtggacacc gtgccactac ctactggaat agcgtcctca 4260 atgctgcata cgtgcgttac gctatcggac gagtggcgta cgacacatac aaaccgttcc 4320 acgtaggtga cgacgtgcta attctgctgg atagccctgc agacgcgtgg aatgtagtga 4380 agaagctgga gcacattggc tgcactctac aacgctcgaa gcagtctgtg ggcataggtg 4440 gctacgagtt cctgcgtgtc gctggctcgc cattcactgg tgtgggcggt tacgtggcga 4500 ggtcggtggc aggcctggta agtggtagtt gggtgtcaag cgtcaagatg gcacctcgtg 4560 aagcactcca atcactgata caacaggcgc ggagcataat gaatcgcagt ggtaaccctg 4620 ccgcctacaa gctgctcatc agcagtgcca ggcgcacgat cgggattgac cagcaatatt 4680 tggaggaatt cttgtcgggt aacgtagcct tggcgcctgg accgtgttac cgcagtgatc 4740 ggcgatacgt ggcacgtcat gtcgaatggg agagttcggc tgatgacccg tacggtgggg 4800 ggagattgtt gatcggcggt attgaaattg agaagcttcc aaaccatgct gcgagagact 4860 acgtgaactg ggcggcgagc gaggtcgaac gtgtcgggct agccatggtc gggcgtgtgc 4920 cctggagagc gatggcgttg actgcttatg cggctatgga accgtcgctg tatgggaacc 4980 cgtctggcgg tgtgcgtgct gcgtacatat cacctcgtac cgtgcggtta atcgatcatt 5040 atattgacgc agcggatata acaacaacgg attcacaaca cggtatacta gcacagtacc 5100 ccctgctatc tttattgcga aactatttca gcatggagga cctgacctac ctgcttaatt 5160 tcgtcggaag agatgccggg atagatgcgc gagtgacggc gtggggaggt actaacgagg 5220 gtatttgtgt ctgtggtcta ctaccttatg cagatgctgc aggtgcggcg tcacgtgtac 5280 tgggcaacgc gatacacgtg tctgtgccgg tagcggtgtg aaacgaccgt gaggtcgggg 5340 accttcacac cgataggc 5358 //