ID AF352025; SV 1; linear; genomic RNA; STD; VRL; 5742 BP. XX AC AF352025; XX DT 05-MAY-2001 (Rel. 67, Created) DT 11-JAN-2006 (Rel. 86, Last updated, Version 4) XX DE Beet chlorosis virus isolate BChV-CR, complete genome. XX KW . XX OS Beet chlorosis virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5742 RX DOI; 10.1007/s007050200023. RX PUBMED; 12038685. RA Hauser S., Stevens M., Beuve M., Lemaire O.; RT "Biological properties and molecular characterization of beet chlorosis RT virus (BChV)"; RL Arch. Virol. 147(4):745-762(2002). XX RN [2] RP 1-5742 RA Lemaire O., Hauser S., Stevens M., Beuve M.; RT ; RL Submitted (21-FEB-2001) to the INSDC. RL Unite de Recherche Biologie des Interactions Virus Vecteur, INRA, 28 rue de RL Herrlisheim, BP 507, Colmar 68021, France XX DR MD5; 31e086b666ada9bb03d7f972982b2226. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF01074; RF_site1. XX FH Key Location/Qualifiers FH FT source 1..5742 FT /organism="Beet chlorosis virus" FT /isolate="BChV-CR" FT /mol_type="genomic RNA" FT /db_xref="taxon:131082" FT CDS 27..773 FT /codon_start=1 FT /product="putative protein P0" FT /note="ORF-0" FT /db_xref="GOA:Q9IMT3" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:Q9IMT3" FT /protein_id="AAK49960.1" FT /translation="MNFEICFKTNSELLVTSERHLPLKERSFIIGRFLTQIPQLLHHFK FT YGHQVEQFLRSILFQLPNLIWSSWDHGTILYGDRPFTRAEDLLRFSLTTGYYPTPTNTG FT LRVGLPSSEKAVRLQLQRTCNTRLAERLQRHPEILATTSINGFRKALGYHLRAINRIEY FT LGKIDVGPHTVMGLCDLGCQLIHDEFFDEQLEPGYNSGLIDGLKRAYGTGSSIILQNIT FT TMPTCVGGKDGDERVHHDEESLHRET" FT CDS join(163..1548,1548..3404) FT /codon_start=1 FT /ribosomal_slippage FT /product="putative fusion protein P1-P2" FT /note="ORF-1/ORF-2" FT /db_xref="GOA:Q91AV6" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q91AV6" FT /protein_id="AAK49964.1" FT /translation="MDTKLNSSYALFFFSSLILFGALGTMAPSYMVTGPLHAQKISSDF FT PLPPDITQLLLTQDSVWDCPLQKKLSDYSYKELVIHVLQRGYNDTQKYLPQLASMDFGK FT HWDTISGQLIGLNILERLMWGLIRLWGYVIWVVSSSTMSFLMNNLSLAIIVASLMALSV FT LMARAAQLFFKILQLCLPVLAVRMVMSAFTTMKRVCIERPKSYVKECAVRGFTTWAVPM FT KPPKNSILLISHDDGSHAGYATCVTLHDRQSTTIGLITCSHAPINGSVFSTVTGNKIKM FT ESFKTLYDDAETDVKILFGPPNWESVMGCKALKLVTRDSLAKGPATIYTFGDNGWTSSQ FT ASISGAYDKNKASVLSITDKGHSGAPYISGKNVIGIHSGGDIVDNVNVCSTIPKIVNLT FT TPQLVFETTAPQGRLFLEKEMDDLLEYDWSGQEARAIVKERFERGLYEGKGVKSYDFET FT TSDNCLLSYCPPASVGKWTERRRPPNNRHLRKHPKSNARLWRFLKARSCCDSAKFHAHN FT ASGWNTDDTRSRCFCDDPSHTECTFGSKHRGGTNGSFVKPNKSREYRRESGWTDSEKRR FT EAVKTQATEFEKFFEGQYRWGVGPTTQEVCGFEEVGSLSKFYHSKQKFDSTYGVRVAEE FT HSELKELTAAFGWPKFGAQAELTSLRLQPDRWLQRMESAQIPSAEGEESVINRLVEAYS FT CARTNAPTSTTGDSLTWEGFIEDIKEAVSSLELDAGVGVPYIAYGTRTHRDWVFNQELL FT PVLTRLTFNRLQKMLEVNSDDLNAEQLVQHGLCDPIRVFVKGEPHKVSKLEEGRYRLIM FT SVSLVDQLVARVLFQNQNKREIELWRAVPSKPGFGLSTDDQIEDFVKVLASQLGEEPQE FT VFNNWSAKLIPTDCSGFDWSVAHWMLEDDMEVRNRLTRNNNYTTKRLRSVWLKCISNSI FT LCLSDGRLFSQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGASWAMAMGDDALESVDSNL FT TEYKKLGFKVEVAKQLEFCSHIFKSERLALPLNVKKMLYKLIYGYNPDSGNLEAIKNYL FT DACHSIVNEIRHDESLVQKIISWLVIPVQPQN" FT misc_feature 3608..5620 FT /note="leaky stop codon results in single ORF rather than FT three ORFs at a frequency of about 10%" FT CDS 3608..4216 FT /codon_start=1 FT /product="putative protein P3" FT /note="ORF-3" FT /db_xref="GOA:Q91AV5" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:Q91AV5" FT /protein_id="AAK49961.1" FT /translation="MNTVVGRRTINGRRRPRRQARRARRSQPVVVVQTSRTTQRRPRRR FT RRGNNRARGAVSTRGASSSETFVFSKDNLAGSSSGAITFGPSLSDCPAFSNGILKAYHE FT YKISMVILEFVSEASSQNSGSIAYELDPHCRLDALSSTINKFGITKPGRRAFTASYING FT TDWHDVAKDQFRILYKGNGSSSIAGSFRITIKCQFHNPK" FT CDS 3639..4166 FT /codon_start=1 FT /product="putative protein P4" FT /note="ORF-4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q91AV4" FT /protein_id="AAK49962.1" FT /translation="MEEDDHAGKHDALGALSQWLWSKPLGQHNADLDDDEEVITGQEEL FT FLPEEQAQARHLFSRKTISREVPAEQSRSGRVYQTAQHSLMEYSRPTMSIKSRWSFWSS FT SPKPLPKTPVPSLTSWTHTVDSTPFPRPSISSGSQSPGGGRLQRLTSTGRIGTTLPRTN FT SGSSTKAMVLHR" FT CDS 4325..5620 FT /codon_start=1 FT /product="putative protein P5" FT /note="ORF-5" FT /db_xref="GOA:Q91AV3" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q91AV3" FT /protein_id="AAK49963.1" FT /translation="MAQSTDDAISLYDMPSQRFRYIEDENMNWTNLNSRWYSQNNLKAI FT PMIIVPVPQGEWTVEISMEGYQPTSSTTDPNKDKQDGLIAYNDDLNEGWNVGIYNNVEI FT TNNKADNTLKYGHPDMELNNCHFNQGQCLERDGDLTCHVKTTGDNASFFIVGPAVQKQS FT KYNYAVSYGAWTDRMMEIGMIAIALDEQGSSGSTRTQRPKRAGHSMAVSTWETINYPEK FT ENSEITETSQRQDFKTPLHISEGSDPLEVGEGGVPLPVDENIPDFVGDDPWFKISTRKP FT QEEEAMSQSSVLKPQLKPPGLPRPQPVRTIRDFDPKPDLVEAWRPDVNPGYSKEDVAAA FT TVMYGGSVHEGRSMIDKRDKAVLNGRKRWGSSLASSLTGGTLKASAKSEKLATLTSSER FT AQFERIKRQQGATRASEFLEQLLAGTNPDPRF" XX SQ Sequence 5742 BP; 1692 A; 1370 C; 1348 G; 1332 T; 0 other; acaaaagaat aggaggagaa cagcgaatga actttgagat ttgttttaaa acgaacagcg 60 aactactagt gacgagcgaa agacacttgc cactaaaaga gagatcattt ataattggaa 120 ggtttctcac gcaaatccct caacttttgc accatttcaa atatggacac caagttgaac 180 agttcttacg ctctattctt tttcagctcc ctaatcttat ttggagctct tgggaccatg 240 gcaccatctt atatggtgac aggcccttta cacgcgcaga agatctcctc agattttccc 300 ttaccaccgg atattaccca actcctacta acacaggact ccgtgtggga ctgccctctt 360 cagaaaaagc tgtcagatta cagctacaaa gaacttgtaa tacacgtctt gcagagaggc 420 tacaacgaca cccagaaata cttgccacaa ctagcatcaa tggatttcgg aaagcactgg 480 gataccatct cagggcaatt aataggattg aatatcttgg aaagattgat gtggggcctc 540 atacggttat ggggttatgt gatctgggtt gtcagctcat ccacgatgag ttttttgatg 600 aacaacttga gcctggctat aatagtggcc tcattgatgg ccttaagcgt gcttatggca 660 cgggcagctc aattattctt caaaatatta caactatgcc tacctgtgtt ggcggtaagg 720 atggtgatga gcgcgttcac cacgatgaag agagtttgca tagagagacc taaatcctat 780 gtaaaagagt gtgcagtccg ggggttcact acatgggctg taccaatgaa acccccaaag 840 aattcgattt tgctcataag tcatgacgac ggttcacacg caggttatgc aacttgcgtg 900 actttacacg acagacaatc aaccaccatt ggtttgataa cctgctcgca tgctcccatc 960 aatgggagtg ttttctcaac cgtcactggc aataagatca aaatggagag ttttaaaact 1020 ctctatgatg acgctgaaac agatgtaaag atcttatttg gcccacccaa ttgggaaagc 1080 gtcatgggat gcaaagcctt aaaacttgtc actagagaca gcttggcgaa ggggccagcc 1140 accatttaca cttttggtga taatggatgg acttcttcac aagcctcgat tagtggcgca 1200 tacgataaaa ataaagcatc cgtgctgagc ataaccgata aagggcatag tggagccccg 1260 tacattagtg gcaaaaacgt cataggaatc cactcaggag gagacatcgt agacaatgtg 1320 aatgtttgtt ctacgattcc aaagattgta aaccttacaa cccctcaact agtcttcgag 1380 accacagccc cgcaagggag attatttctc gagaaagaaa tggatgacct gctcgaatac 1440 gattggtcag gccaagaggc ccgcgcaatt gtcaaagaaa gatttgagcg cgggttatat 1500 gagggcaaag gagtgaagtc ttatgacttt gaaactacca gtgataatgt ctcctatcct 1560 attgtccccc cgcatctgtc gggaaatgga ctgagcggcg ccgaccgcca aacaaccggc 1620 accttcgaaa gcatccaaag tcaaatgccc gcttgtggag attcctcaag gcacgatctt 1680 gctgcgactc agccaaattt catgcccaca acgcaagtgg ctggaacaca gacgacaccc 1740 gttcaaggtg tttctgtgat gacccaagcc ataccgagtg caccttcggt tccaaacacc 1800 gaggtggaac taatgggtct tttgttaaac cgaataaatc tagggaatat agaagagaaa 1860 gtggctggac tgatagcgaa aaacgtcgcg aagctgtcaa aacccaagcg acggaattcg 1920 aaaaattttt cgaaggtcaa tacaggtggg gcgtgggtcc caccacacaa gaggtttgcg 1980 gattcgaaga agtcggatcc ctctccaagt tctaccactc caaacaaaaa ttcgactcaa 2040 catacggagt tagagtggcg gaagagcaca gtgagctcaa agagctcaca gcggcatttg 2100 ggtggcccaa gttcggcgcc caagccgaat taacttccct gcgactgcag cctgatagat 2160 ggctccaacg gatggagtcc gctcaaatac cctcggcaga aggcgaggaa tccgtcataa 2220 acaggctagt tgaagcctac agttgtgcgc gcaccaatgc gccaacatca accaccggtg 2280 attccctaac gtgggaaggt tttattgaag atattaagga agctgtgagc tccttagaat 2340 tagacgccgg tgttggggtt ccatacatcg cttatgggac tcgaacccat agagactggg 2400 tgttcaacca agagttgcta cctgtgttga ctcgactgac tttcaaccgc ctacagaaga 2460 tgttggaagt caactcggac gacctgaatg cggaacaact ggttcaacac ggactttgcg 2520 acccgataag ggtatttgtt aagggagaac cccacaaagt ctctaagctg gaagaaggtc 2580 gctaccgcct tataatgagt gtatccctag tggatcaatt ggtagccaga gttctgttcc 2640 aaaatcaaaa caaacgagaa atagaactct ggagggcggt gccctcgaag ccgggatttg 2700 gtttatcaac tgatgaccag attgaagact ttgttaaagt cttggcttca caacttggtg 2760 aggaaccaca agaggttttc aataactggt ccgccaagtt gataccaaca gattgctccg 2820 gttttgactg gagtgtagcg cactggatgc tcgaagacga catggaagtc cgcaatcgct 2880 tgaccaggaa taacaactac acaacaaaac gattacgatc agtgtggttg aagtgcataa 2940 gtaattcaat cttgtgcctc tctgatgggc gccttttctc acaaagagtg cccggagttc 3000 agaaaagtgg aagttacaat acttcctctt caaactcccg tatcagggtc atggccgcat 3060 atcattgtgg cgcttcctgg gctatggcga tgggtgatga cgccttagaa tctgttgact 3120 ctaacctaac agagtataaa aagttaggtt tcaaagtcga ggtagccaaa caactggaat 3180 tttgctcaca tatcttcaaa agcgagcgcc tcgcattgcc gctgaacgta aagaaaatgc 3240 tttacaagct gatctacggg tacaatcctg atagcggcaa cttggaagcg atcaagaact 3300 accttgacgc ttgtcactcg atcgtgaatg aaatacgaca cgatgagagc ttggtccaga 3360 aaataatatc gtggttggta attccagtcc aaccacaaaa ctaattcagg aggaccaagt 3420 ataaaaacag ccgggtaaac atcagttgca aacaccggaa gttttagtct gattacacaa 3480 caagccaaaa tagacttcaa atttttagca ggattctcaa gcggtctatt gtcagcaata 3540 cccgtaacgg taatcggctt gtattttgtc tacctgaaaa tctcccaaca cgtaagatca 3600 atcgttaatg aatacggtcg tgggtaggag aacaatcaat ggaagaagac gaccacgcag 3660 gcaagcacga cgcgctcggc gctctcagcc agtggttgtg gtccaaacct ctcggacaac 3720 acaacgccga cctagacgac gacgaagagg taataaccgg gcaagaggag ctgtttctac 3780 cagaggagca agctcaagcg agacatttgt tttctcgaaa gacaatctcg cgggaagttc 3840 cagcggagca atcacgttcg ggccgagtct atcagactgc ccagcattct ctaatggaat 3900 actcaaggcc taccatgagt ataaaatctc gatggtcatt ttggagttcg tctccgaagc 3960 ctcttcccaa aactccggtt ccatcgctta cgagctggac ccacactgta gactcgacgc 4020 cctttcctcg accatcaata agttcgggat cacaaagccc gggaggaggg cgtttacagc 4080 gtcttacatc aacgggacgg attggcacga cgttgccaag gaccaattca ggatcctcta 4140 caaaggcaat ggttcttcat cgatagccgg ttcttttaga atcactataa agtgtcaatt 4200 ccacaacccc aaataggtag acgaggaacc cggccctagc ccagggcctt ctccctctcc 4260 acaacccaca ccccaaaaga aatatcgttt catcgtctat actggtgtcc ctgtgacccg 4320 tataatggcc caatctacag atgacgccat ctctttgtat gacatgccgt ctcaacggtt 4380 tcgttacata gaggacgaga acatgaactg gacgaacctc aattctcgat ggtattccca 4440 gaataattta aaagccatcc cgatgataat agtaccagtc cctcaaggtg agtggactgt 4500 ggaaatttcg atggaggggt atcaaccaac ctcgagcacc acagatccta ataaggataa 4560 acaagatggt ctcattgcat acaatgatga cctcaatgag ggttggaatg ttgggattta 4620 caacaatgtg gaaataacca acaataaggc cgacaacacc ctgaagtacg gccacccaga 4680 catggaactc aataattgtc actttaatca aggacaatgt ctggagagag atggagattt 4740 aacctgtcac gtaaaaacga ctggtgacaa tgcctccttc tttattgttg gtcccgccgt 4800 ccagaagcaa tcaaagtata actacgccgt ttcttacgga gcctggacgg atcggatgat 4860 ggagatagga atgatcgcta ttgctcttga cgagcaagga tcatccggtt ccacaagaac 4920 tcaaagacca aagcgagctg gccactccat ggcagtctca acctgggaga ctataaacta 4980 cccggagaag gaaaactccg agataactga aaccagtcaa agacaagact ttaaaactcc 5040 tctccacatt agtgagggtt ccgaccctct ggaagtcggt gaaggaggcg tgcctctccc 5100 tgtagatgag aacatccccg actttgttgg cgatgatccc tggttcaaaa tatccacccg 5160 taaaccacag gaagaagagg cgatgtcaca atcgagtgtt ctcaaacctc aattgaagcc 5220 tcctggattg ccaagaccac aaccagttag gacaatcaga gatttcgatc caaaaccgga 5280 cttagttgag gcatggcgac ctgacgtgaa tcccggatat tccaaagaag acgtggcagc 5340 agccactgtc atgtacgggg gttccgttca cgaaggccgg tctatgattg acaagcgtga 5400 caaagctgtg ttaaacggcc gcaagcgttg gggttcttcc ttggcgtctt ccttgacagg 5460 aggaacgctt aaggcttctg caaagtcaga gaagcttgct acactcactt cgagtgagag 5520 ggcgcaattc gagcgaatta agcgccagca aggtgccaca cgagcttcag aattcttaga 5580 acaacttctg gctggcacaa accctgaccc aaggttctga tgaacctttc taaatcatca 5640 cagtcaagcc cgtgacttta aacgtggaac gactccgaaa ggataggcaa cgagtgttac 5700 ccattgcagg gttacagaag gactcctacg gcacttcggt gt 5742 //