ID AF352024; SV 1; linear; genomic RNA; STD; VRL; 5776 BP. XX AC AF352024; XX DT 05-MAY-2001 (Rel. 67, Created) DT 11-JAN-2006 (Rel. 86, Last updated, Version 4) XX DE Beet chlorosis virus isolate BChV-2a, complete genome. XX KW . XX OS Beet chlorosis virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5776 RX DOI; 10.1007/s007050200023. RX PUBMED; 12038685. RA Hauser S., Stevens M., Beuve M., Lemaire O.; RT "Biological properties and molecular characterization of beet chlorosis RT virus (BChV)"; RL Arch. Virol. 147(4):745-762(2002). XX RN [2] RP 1-5776 RA Lemaire O., Hauser S., Stevens M., Beuve M.; RT ; RL Submitted (21-FEB-2001) to the INSDC. RL Unite de Recherche Biologie des Interactions Virus Vecteur, INRA, 28 rue de RL Herrlisheim, BP 507, Colmar 68021, France XX DR MD5; 3f7d9df284fd454c5756fb6a7f7e3928. DR EuropePMC; PMC2583970; 18937850. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF01074; RF_site1. XX FH Key Location/Qualifiers FH FT source 1..5776 FT /organism="Beet chlorosis virus" FT /isolate="BChV-2a" FT /mol_type="genomic RNA" FT /db_xref="taxon:131082" FT CDS 27..773 FT /codon_start=1 FT /product="putative protein P0" FT /note="ORF-0" FT /db_xref="GOA:Q9IMT0" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:Q9IMT0" FT /protein_id="AAK49955.1" FT /translation="MNFEICFKTNSELLVTSERHLPLKERSFIIGRFLTQIPQLLHHFK FT YGHQVEQFLRSILFQLPNLIWSSWDHGTILYGDRPFTRAEDLLRFSLTTGYYPTPTNTG FT LRVGLPSSEKAVRLQLQRTCNTRLAKRLQRHPEILATTSINGFRKALGYHLRAINRIEY FT PGKIDVGPHTVMGLCNLGCQLIHDELLDEQLEPGYNSGLIDGLKRAYGTGSSIILQNIT FT TMPTCVGGKDGDERVHHDEESLHRET" FT CDS join(163..1580,1580..3404) FT /codon_start=1 FT /ribosomal_slippage FT /product="putative fusion protein P1-P2" FT /note="ORF-1/ORF-2" FT /db_xref="GOA:Q91AW0" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q91AW0" FT /protein_id="AAK49956.1" FT /translation="MDTKLNSSYALFFFSSLILFGALGTMAPSYMVTGPLHAPKISSDF FT PLPPDITQLLLTQDSVWDCPLQKKLSDYSYKELVIHVLQRGYNDTQKYLPQLASMDFGK FT HWDTISGQLTGLNILERLMWGLIRLWGYVIWVVSSSTMSFLMNNLSLAIIVASLMALSV FT LMARAAQLFFKILQLCLPVLAARMVMSAFTTMKRVCIERPKSYVKECAVRGFTTWAVPM FT KPPKNSILLISHDDGSHAGYATCVTLHDRQSTTIGLITCSHAPINGSVFSTVTGNKIKM FT ESFKTLYDDAETDVKILFGPPNWESVMGCKALKLVTRDSLAKGPATIYTFGDNGWTLSQ FT ASISGAYDKNKASVLSITDKGHSGAPYISGKNVIGIHSGGDVVDNVNVCSTIPKIVNLT FT TPQLVFETTAPQGRLFLEKEMDDLLEYDWSGQEARAIVKERFERGLYEGKGVKSYDFET FT TSDNVSYPIVPPHLPGKWTERRRPPNNRHLRKHPKSNARLWRFLKARSCCDSAKFHTHN FT ASGWNTDDTRPRCFCDDPSHTECTFGSKHRSGIDGSPIEPNKSREYRRESGWTDSEKRR FT EAIKTQAKDFEKFFEGQYRWGMGPTTQEVCGFEEVGSLPKFYHSKQRLNSEYGVRVAEE FT YSELKELTAGFGWPKFGAQAELTSLRLQADRWLQRMESAQIPSTEGEESVINRLVEAYS FT CARTNAPTSTAGNSLTWEGFIEDIKEAVSSLELDAGVGVPYIAYGTRTHRDWVFNQELL FT PVLTRLTFNRLQKMLEVNSDDLNAEQLVQHGLCDPIRVFVKGEPHKVSKLEEGRYRLIM FT SVSLVDQLVARVLFQNQNKREIELWRAVPSKPGFGLSTDDQIEDFVKVLASQLGEEPQE FT VFNNWSTKLIPTDCSGFDWSVADWMLEDDMEVRNRLTRNNNHTTKRLRSVWLKCISNSV FT LCLSDGCLLSQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGASWAMAMGDDALESVDSNL FT TEYKKLGFKVEVAKQLEFCSHIFKNERLALPLNVKKMLYKLIYGYNPDSGNLEAIKNYL FT DACHSIVNEIRHDESLVQKIISWLVIPVQPQN" FT misc_feature 3607..5610 FT /note="leaky stop codon results in single ORF rather than FT three ORFs at a frequency of about 10%" FT CDS 3607..4215 FT /codon_start=1 FT /product="putative protein P3" FT /note="ORF-3" FT /db_xref="GOA:Q91AV9" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:Q91AV9" FT /protein_id="AAK49957.1" FT /translation="MNTVVGRRTINGRRRPRRQTRRAQRNQPVVVVQTSRRTQRRPRRR FT RRGNNRAGRTVSTRGTGQSETFVFSEDNLAGSSSGAITFGPSLSDCPAFSNGMLKAYHE FT YKISMVILEFVSEASSQSSGSIAYELDPHCKLNSLSSTINKFGITKPGRRAFTASYING FT TEWHDVAKDQFRILYKGNGSSSIAGSFRITIKCHFHNPK" FT CDS 3638..4165 FT /codon_start=1 FT /product="putative protein P4" FT /note="ORF-4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q91AV8" FT /protein_id="AAK49958.1" FT /translation="MEEDDHEGKHDALSAISQWLWSKPLGEHNADLDDDEEVITGQEEL FT FLPEEQVKARHLFSRKTISREVPAEQSRSGRVYQTAQHSLMECSRPTMSTKSRWSFWSS FT SPKPLPKVPVPSLTSWTHTVNSTPFPQLSISSGSRSPGGGRLQRLTSTGRNGMTLPRTN FT SGSSTKAMVLHR" FT CDS 4324..5610 FT /codon_start=1 FT /product="putative protein P5" FT /note="ORF-5" FT /db_xref="GOA:Q91AV7" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q91AV7" FT /protein_id="AAK49959.1" FT /translation="MAQSTDDAISLYDMPSQRFRYIEDENMNWTNLDSRWYSQNSLKAI FT PMVIVPVPQGEWTVEISMEGYQPTSSTTDPNKDKQDGLIAYNDDLKEGWNVGVYNNVEI FT TNNKADNTLKYGHPDMELNSCHFNQQQCLERDGDLTCHIKTTGDNASFFIVGPAVQKQS FT KYNYAVSYGAWTDRMVEIGMIAIALDEQGSSGSARTERPKRVGHSMAVSTWETINLPEK FT EDSEKLKTGQRQDLKTPFTISGSSDVKGIEKRDLPLPADEDIPDFIGNDPWSNVSIRKL FT QEEEAMTSKSGLRPQLKPPGLPKPQPVRTIGNFNPTPELVESWRPDVNPGYSKEDVAAA FT TILYGGSIKDGRSMIDKRDKAVLDGRKHWGSSLASSLTGGTLKASAKSEKLAKLTSRER FT AEFERIKRQQGTTQASEYLEFILKSMNPD" XX SQ Sequence 5776 BP; 1719 A; 1356 C; 1347 G; 1354 T; 0 other; acaaaagaat agcaggagga cagtgaatga actttgagat ttgcttcaaa acgaacagcg 60 aactactagt gacgagcgaa agacacttgc cactaaaaga gagatcattc ataatcggaa 120 gatttctcac gcaaatccct caacttttgc accatttcaa atatggacac caagttgaac 180 agttcttacg ctctattctt tttcagctcc ctaatcttat ttggagctct tgggaccatg 240 gcaccatctt atatggtgac aggcccttta cacgcgccga agatctcctc agattttccc 300 ttaccaccgg atattaccca actcctacta acacaggact ccgtgtggga ctgccctctt 360 cagaaaaagc tgtcagatta cagctacaaa gaacttgtaa tacacgtctt gcaaagaggc 420 tacaacgaca cccagaaata cttgccacaa ctagcatcaa tggatttcgg aaagcactgg 480 gataccatct cagggcaatt aacaggattg aatatcctgg aaagattgat gtggggcctc 540 atacggttat ggggttatgt aatctgggtt gtcagctcat ccacgatgag cttcttgatg 600 aacaacttga gcctggctat aatagtggcc tcattgatgg ccttaagcgt gcttatggca 660 cgggcagctc aattattctt caaaatatta caactatgcc tacctgtgtt ggcggcaagg 720 atggtgatga gcgcgttcac cacgatgaag agagtttgca tagagagacc taaatcctat 780 gtaaaagagt gtgcagtccg ggggttcact acatgggctg taccaatgaa acccccaaag 840 aattcgattt tgctcataag tcatgacgac ggttcacacg caggttatgc aacttgcgtg 900 actttacacg acagacaatc aaccaccatt ggtttgataa cctgctcgca tgctcccatc 960 aatgggagtg ttttctcaac cgtcactggc aataagatca aaatggagag ttttaaaact 1020 ctctatgatg acgctgaaac agatgtaaag atcttatttg gcccacccaa ttgggaaagc 1080 gtcatgggat gcaaagcctt aaaacttgtc actagagaca gcttggcgaa ggggccagcc 1140 accatttaca cttttggtga taatggatgg actctttcac aagcctcgat tagtggcgca 1200 tacgataaaa ataaagcatc cgtactgagc ataaccgata aagggcatag tggagccccg 1260 tacattagtg gcaaaaacgt cataggaatc cactcaggag gagacgtcgt agacaatgtg 1320 aatgtttgtt ctacgattcc aaagattgta aatcttacaa cccctcaact agtcttcgag 1380 accacagccc cgcaagggag attatttctc gagaaagaaa tggatgacct gctcgaatac 1440 gattggtcag gccaagaggc tcgcgccatt gtcaaagaaa gatttgagcg cgggttatat 1500 gagggcaaag gagtgaagtc ttacgacttt gaaactacca gtgataacgt ctcctatcct 1560 attgtccccc cacatctgcc gggaaatgga ctgagcggcg ccgaccgcca aacaaccggc 1620 accttcgaaa gcatccaaag tcaaatgccc gcttgtggag attcctcaag gcacgatctt 1680 gctgcgactc agccaaattt catacccaca acgcaagtgg ctggaacaca gatgacaccc 1740 gtccaaggtg tttctgtgat gacccaagcc ataccgagtg caccttcggt tccaaacacc 1800 gaagtggaat tgatgggtct cctattgaac cgaataaatc tcgggaatat agaagagaaa 1860 gtggctggac tgatagcgaa aaacgtcgag aagctatcaa gacccaggcg aaggatttcg 1920 aaaaattttt cgaaggtcaa taccggtggg gcatgggtcc caccacacag gaggtctgtg 1980 gattcgaaga agtcggatcc ctccccaagt tctaccactc taaacaaagg ctcaactcag 2040 aatacggggt tagagtggcg gaagagtaca gtgagctcaa agagctcaca gcgggatttg 2100 ggtggcccaa gttcggcgcc caagccgaat taacttccct gcgactgcaa gctgacaggt 2160 ggctccaacg gatggagtcc gcacaaatac cctcgacaga aggcgaggaa tccgtgataa 2220 acaggctagt tgaagcctat agttgcgcgc gcactaacgc accaacatca accgccggca 2280 attccctaac gtgggaaggt tttattgaag acatcaagga agctgtaagc tccttagaat 2340 tagacgccgg tgttggggtt ccgtacatcg cctacgggac tcgtacccac agagactggg 2400 tgttcaacca agagttgcta cctgtgttga ctcgactgac tttcaaccgc ctacagaaga 2460 tgttggaagt caactcggac gacttgaatg cggaacaact ggttcaacac ggactttgcg 2520 acccgataag ggtatttgtt aagggagaac cccacaaagt ctccaagctg gaagaaggtc 2580 gctaccgcct tataatgagt gtatccctag tggatcagtt ggtagccaga gttctgttcc 2640 aaaatcagaa caaacgggaa atagaactct ggagggcagt gccctcgaag ccgggatttg 2700 gtttatcaac cgatgaccag atcgaagact ttgttaaagt cttggcttca caacttggtg 2760 aggaaccaca agaagttttc aataactggt ccaccaagtt gataccaaca gattgctctg 2820 gttttgactg gagtgtagcg gactggatgc tcgaagatga catggaagtc cgcaatcgct 2880 tgaccagaaa caacaaccac acaacaaaac gattacgatc agtgtggtta aaatgcataa 2940 gcaattcagt cttatgcctt tctgatgggt gccttctttc acagagagtg cctggagttc 3000 agaaaagtgg aagttacaat acttcttctt caaactcccg tatcagagtt atggctgcat 3060 atcattgcgg cgcttcctgg gctatggcga tgggcgatga cgccctagaa tctgttgact 3120 ctaacctaac agagtataaa aagttgggtt tcaaagtcga ggtagccaaa caactggaat 3180 tttgctcaca tatctttaag aatgagcgcc tcgcattacc gctgaatgta aagaagatgc 3240 tttacaagct aatttacggg tacaatcctg atagcggtaa cttggaagcg atcaagaatt 3300 accttgacgc ttgccactcg atcgtgaatg aaattcgtca cgacgagagc ttggtccaga 3360 aaataatatc gtggttggtc attccagtcc aaccacaaaa ctaattcagg aggatcaagc 3420 atacaaacag ccgggtaaac atcagttgca aacaccggaa gttttagtct gattacacaa 3480 caagccaaaa tagacttcaa atttttagca ggattttcaa gcggtctatg tcagcaatac 3540 ccgtaacggt aattggcttg tattttgtct acctgaaaat ctcccaacac gtaagatcaa 3600 tcgttaatga atacggtcgt gggtaggaga acaatcaatg gaagaagacg accacgaagg 3660 caaacacgac gcgctcagcg caatcagcca gtggttgtgg tccaaacctc tcggagaaca 3720 caacgccgac ctagacgacg acgaagaggt aataaccggg caggaagaac tgtttctacc 3780 agaggaacag gtcaaagcga gacatttgtt ttctcggaag acaatctcgc gggaagttcc 3840 agcggagcaa tcacgttcgg gccgagtcta tcagactgcc cagcattctc taatggaatg 3900 ctcaaggcct accatgagta caaaatctcg atggtcattt tggagttcgt ctccgaagcc 3960 tcttcccaaa gttccggttc catcgcttac gagctggacc cacactgtaa actcaactcc 4020 ctttcctcaa ctatcaataa gttcgggatc acgaagcccg ggaggagggc gtttacagcg 4080 tcttacatca acgggacgga atggcatgac gttgccaagg accaattcag gatcctctac 4140 aaaggcaatg gttcttcatc gatagctggt tctttcagga tcactataaa gtgtcacttc 4200 cataacccca aataggtaga cgaggaaccc ggccctggcc cagggccttc tccttctcca 4260 caacccgcac cccaaaagaa atatcgtttt atcgtctata ctggtgtccc tgtgacccgt 4320 ataatggccc aatctacaga tgatgccatc tccttgtacg acatgccttc tcaaaggttt 4380 cgttacatag aggacgagaa tatgaactgg acgaacctcg actctcgatg gtattcccag 4440 aattctttaa aagccatccc catggtaata gtaccagtcc ctcaaggtga gtggactgtg 4500 gaaatctcaa tggaggggta tcaaccaacc tcaagtacca cggatcctaa taaggacaaa 4560 caagatggtc tcattgcata caatgatgac ctcaaggaag gttggaacgt gggggtttac 4620 aacaatgtgg agataaccaa caataaggcc gataatactt taaagtatgg acacccggac 4680 atggaactta atagttgtca tttcaatcaa caacaatgtc tggaaagaga tggagacttg 4740 acttgtcaca ttaaaacaac tggtgacaat gcctccttct ttattgttgg acctgctgtc 4800 caaaagcaat ccaaatataa ttacgccgtt tcatacggag cttggacaga tcgaatggtg 4860 gagataggga tgatagccat agcactagat gaacaaggct catccggttc cgcaaggaca 4920 gaaagaccaa agagagttgg gcactccatg gcagtctcaa cctgggagac tataaactta 4980 ccggagaagg aagactccga gaaactcaaa accggtcaaa gacaagacct taaaactcct 5040 ttcacgatta gtggaagctc cgatgtgaag ggcatcgaga agagagactt gccccttcct 5100 gctgatgagg acattcctga ttttatcggg aatgatcctt ggtctaatgt atcaatcagg 5160 aagttgcaag aagaagaggc tatgacgtct aagagtggtc ttagacccca gttgaaacct 5220 cccggtctcc caaaaccaca accagttaga acgattggaa attttaatcc aacgccggaa 5280 ttggttgaat cgtggagacc tgatgtgaac cccggatatt ccaaggaaga cgtggcagcc 5340 gccactattc tttatggagg ttctatcaaa gacggccggt ctatgatcga taaacgcgat 5400 aaagctgtgt tagacggccg taagcattgg ggttcttcct tagcttcctc cttaacagga 5460 ggaacgctta aggcctctgc aaagtcggag aagcttgcta aactcacctc gcgtgagagg 5520 gcggaattcg aacgaattaa acgccagcaa ggcaccacac aagcttcaga atacttagaa 5580 tttattctga agagcatgaa ccccgactaa tggttttgaa gggatatagc ctaacccttt 5640 ctggtcctga tgaacctgtc taaatcatca ccgtcaagcc cgtgacgtta aactaggaac 5700 gactcccgaa aggataggca cgaatgttcc ccttatttaa agggttatac agtaggatcc 5760 tacggcactt cggtgt 5776 //