Dbfetch
ID AF347695; SV 1; circular; genomic DNA; STD; VRL; 7559 BP. XX AC AF347695; XX DT 27-OCT-2001 (Rel. 69, Created) DT 27-OCT-2001 (Rel. 69, Last updated, Version 1) XX DE Citrus yellow mosaic virus, complete genome. XX KW . XX OS Citrus yellow mosaic virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7559 RX PUBMED; 11562547. RA Huang Q., Hartung J.S.; RT "Cloning and sequence analysis of an infectious clone of Citrus yellow RT mosaic virus that can infect sweet orange via Agrobacterium-mediated RT inoculation"; RL J. Gen. Virol. 82(Pt 10):2549-2558(2001). XX RN [2] RP 1-7559 RA Huang Q., Hartung J.S.; RT ; RL Submitted (08-FEB-2001) to the INSDC. RL Fruit Lab, USDA/ARS, 10300 Baltimore Ave., Beltsville, MD 20705, USA XX DR MD5; 52b8d5d8ad8ea9eb84ef29da82bbeb3a. XX FH Key Location/Qualifiers FH FT source 1..7559 FT /organism="Citrus yellow mosaic virus" FT /mol_type="genomic DNA" FT /db_xref="taxon:174178" FT CDS 231..662 FT /codon_start=1 FT /product="unknown" FT /note="ORF 1" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:Q91B31" FT /protein_id="AAL18493.1" FT /translation="MSRIWEEAIQKWYETSHTANLEYLDLASKPKVSNSEISHNLAVVY FT DRLNLFSRVSIKNFKSIQETLEKQDLRIRKLESSLKTLTSEFIAHKPLSKSEVKALVTE FT IAKQPKLVEAQALQLTESLNQKLDRVETLIAKVERWVHS" FT CDS 659..1072 FT /codon_start=1 FT /product="unknown" FT /note="ORF 2" FT /db_xref="UniProtKB/TrEMBL:Q91B30" FT /protein_id="AAL18494.1" FT /translation="MTYQNTEKTPTYKRALEATEPINSPALGFINPEDYSGGITGTKAL FT IKQNNLLIQLVVELSVNVNSLSEQVAQLTRQLGKQPQQGSSTATLPDDLVDKLKNLSLG FT TEKKKEKRGTFYAYKDPYLIYKEEVEKLKKQQQ" FT CDS 1069..7020 FT /codon_start=1 FT /product="unknown" FT /note="ORF 3" FT /db_xref="GOA:Q91B29" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:Q91B29" FT /protein_id="AAL18495.1" FT /translation="MSTSRARTVIEQLPPATTARVEERDNTPLYDDQIRDYRQWQRRRH FT NMGRRWNQLIGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRTDDRHHQVYIH FT KSEEAILCVDGDQVDRLLIQPESAEQLSRSGMSFIHMGIVQVRIQILHRQHEGTTALVV FT FRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNG FT EANLLVTRGIVGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSTADIQGQQWFLR FT PSNIPAVPMAPTNVDTRNMIDGSISLRFNSYQPAPDPTPVAYNQHDEEVPPDEDEEQIR FT NHTIALWREDDEVWDTLGEPSGKFDFYVRYTRPAHALQDPAHIVATGWDDLDNDPSTSS FT PSNNILTYLTPSSSSDEDDDMSYLQYLAQQSPVPSPTQDFTNPFSEGGGESTYPYPSFQ FT PPFDLQSDDSYGTLATWSEYDAMSQSNSPSSHSDAIQHLSFQHPSADTVLDFDRYSFTT FT SEDDVVQSAWISENLFRENTGNGEVHNLVPPRPDTPRGDEVKGTQESMAHTVAVTTEES FT KHEAEFDYPAFARLQAHEESGRPKPKTEKVLSSAISSYTPPTDTAMTPVAYPPAQNIAS FT PSYNPSPQMPMFEGYYPKRPNFKRDNHAFISLPSAQQNTGALFIMPQQIGLFHEVFTSW FT EAITKAYVAQQGITDPRDKAEFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGT FT QNILSQMRRVFSLEDPTTGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRM FT FIGPELSEKLWLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRR FT SLKNLSFCSSIPIPGYYGGKSGEKRYGVRRTTTYKGKPHSTHARIEKTKHLRNKKCKCY FT LCGEEGHFARECPNDRRNVKRVAMFEGLDLPDDCEIVSIDEGDPDSDAIFSISEGEEAG FT TLEEQCFVFQEECNGTYWLGKRGGYQDLVQISKEIYYCQHEWEENQPINDPAHVRCYPC FT KRETTQRARLHCKLCHITSCLMCGPTYFNKKITVQPMPQAPFNQKGLLQQQQEYIAWCN FT NEIARLKEEVAFYKQLAQERELQLQLEQSRKELAGVDSRRRKDKGIVIDEGSCYFNPEE FT TTRIIAHGDTQVTKTRPVKNMLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDSRSVPK FT DALEENSFVVNFSGINSKQQVKQKLKTGKMFINEHYFRIPYCYSFEMQIGDGIQLILGC FT NFIRSMYGGVRLEGNTITFYKQITSINTRLAAPLLKQEEEEKEEELNLEEHRLIQEMVA FT YSTERPFVQFQQKFAGLIQDLKAQGYIGEEPMKYWAKNQVVCHLDIKNPDMVIEDRPLK FT HVTPQMEESFRKHVEALLKIGAIRPSKSRHRTTAIIVNSGTSIDPITGKEVKGKERMVF FT NYKRLNDLTNKDQYSLPGIQTILQRLKGSTIFSKFDLKSGFHQVAMHPDSIEWTAFWVP FT SGLYEWLVMPFGLKNAPAIFQRKMDHCFKGTEAFIAVYIDDILVFSKTEQDHEKHLQIM FT LAICQKNGLILSPTKMKIAQAEIEFLGAIIHKGLIKLQPHIVQKLLTFTNKQLEEVKGL FT RSWLGLLNYARSYIPHMGRLLSPLYAKVSPTGERRMNRQDWALIDKIRAQVQNLPALEL FT PPADCFIIIETDGCMDGWGGVCKWKVAQYDPRSSERVCAYASGKFNPPKSTIDAEIHAV FT MNSLNNFKIYYLDKSSLCLRTDCQAIISFFNKSNVNKPSRVRWIAFTDFLTGLGIPVNI FT EHIDGKNNHLADALSRLVTGFVFAEPQCQDKFQDDLGKLEAALQEKKEAPQAMHVEYVS FT LLIRSADRITRSLCFMRDSSHSRIYSCRPGKEPMKALICEQKSCQSKGDLGNTRTVHSK FT SAFNQQDNWWPSTSTNSLTSEAKLQGTTHMPIGYPHAIGTTSNCVKWSSY" FT CDS 1973..2512 FT /codon_start=1 FT /product="unknown" FT /note="ORF 4" FT /db_xref="GOA:Q91B28" FT /db_xref="UniProtKB/TrEMBL:Q91B28" FT /protein_id="AAL18496.1" FT /translation="MDLFLLDSTVTNQLQIQPLLLIISMMRKYPLMKMKSRSVIIPSLY FT GGKMTRYGIHLVNLRANLIFMSVILDLHMLYKILLILLLLDGMTLTMIHPPQVLLIISL FT LTSPLLPLLMRMMTCPISNTLLNNHLFLLLHRISPILFRKVVGNLPTLTPHFNHHSTFN FT QTTHMVLWQLGVNMML" FT CDS 3977..4264 FT /codon_start=1 FT /product="unknown" FT /note="ORF 5" FT /db_xref="UniProtKB/TrEMBL:Q91B27" FT /protein_id="AAL18497.1" FT /translation="MKVIQIVMQSSVFPKEKKLELLKNNVLCSRKNAMEHIGLVKEVDT FT RISCKSLRRSTIASMNGRRINPLMIQHMFGVTLVKGKPLRELAYIASYAT" FT CDS 6594..7058 FT /codon_start=1 FT /product="unknown" FT /note="ORF 6" FT /db_xref="UniProtKB/TrEMBL:Q91B26" FT /protein_id="AAL18498.1" FT /translation="MSRQVPGRFREIGSSSSGEERGSASNARRICLPVDQISGPHYPLA FT LLYEGLVSQQNLLMQARQRTNEGLNLRTEVMPIQRRLREYEDCALQECIQSARQLVALH FT QHKLAYIRSKATRDNAYADRLPTCNRDHEQLCEVVELLEGISERISDTAV" XX SQ Sequence 7559 BP; 2337 A; 1631 C; 1666 G; 1925 T; 0 other; tggtatcaga gcttggttat gttcttacaa cgatgggagc ttaagttctt ccattaggtc 60 tgaggaaaga gttggttgta tggtgtgttt agttcctatc tgtattgtta ttcctgtgtt 120 catgatatag aaaacgatca tcgcgaaaag ggtgaaggca ctatatctgg cagcgagagg 180 agagtaagtc cagtgaaacc cttcgcatga cgctaaaggt gatctaatct atgtctagaa 240 tttgggaaga agcaatacag aaatggtatg agacatccca tacagctaat ctcgagtact 300 tagatctagc ttcaaaacca aaagtttcca attcagaaat ttcacacaac cttgctgtag 360 tttatgatcg tttgaatctg tttagccgtg tctctattaa aaatttcaaa agtatccaag 420 aaaccttaga aaaacaagac cttagaattc gaaagcttga gtctagtttg aaaaccttaa 480 ccagtgagtt tatagcccat aaacctttgt ccaaaagtga ggtaaaagcc ttagtcacag 540 aaattgccaa acagccaaag cttgttgaag cacaggccct tcagttgacc gagtctctta 600 accaaaagct tgatagggtt gaaaccctaa tagctaaggt tgaacggtgg gttcattcat 660 gacctaccag aatactgaaa agactcctac atacaaaaga gctttagaag caaccgagcc 720 tatcaacagt cccgccctag gttttataaa tccagaagat tattcaggag gcattactgg 780 tacgaaggct ttgattaagc aaaacaacct gctcattcaa cttgtggtgg aactttctgt 840 caacgtcaac agcttatctg aacaggttgc tcaacttaca aggcaacttg gaaagcaacc 900 ccagcaaggc tcatcaacag caaccttacc tgacgatttg gttgacaaac tcaagaacct 960 ttccttaggt actgagaaaa agaaggagaa gcgtggtacc ttctacgctt acaaagaccc 1020 atacctgatc tacaaggaag aggtagaaaa gttaaagaag caacaacaat gagtaccagt 1080 cgtgctcgta cagttataga gcaactccct ccggctacaa cagctcgggt ggaagaaagg 1140 gataatactc ccctctatga tgaccaaatc agagattata ggcagtggca gcggcggcgg 1200 cacaacatgg ggcggagatg gaatcagttg ataggacgac cctacaatca gaccttggaa 1260 caggttgtgg accctgaagt agctttacag ctatcaatgc aggagcgtgc cagactagta 1320 ccagcagagg tactttacag atcaagaact gatgatcggc accatcaagt ctacattcac 1380 aagtcagagg aggctatcct ttgtgtagat ggtgatcaag ttgaccggtt actaattcaa 1440 ccggaaagtg ctgaacagtt aagcaggagc ggtatgtcct tcattcatat gggcatagtt 1500 caggttcgga tccagatctt acacagacag catgagggaa caacagccct tgtggtgttt 1560 agagacaatc ggtggcaagg agaccagtca atatttgcca ccatggagct ggatttaact 1620 aaaggtatgc agatggtgta cataatcccg gacaccatga tgacagtcag agacttctgc 1680 cggaatgttc aaatttccat attaacaaaa ggatatggga attggcagaa tggcgaggca 1740 aatctgcttg ttacaagggg aattgttgga cggttatcaa atacccctaa tgtggccttt 1800 gcctatcaga tccaaaatgt taccgactac ttggtcagtc atggaattca ggccctgcca 1860 ggacggcgat attctactgc agatatacag ggccaacaat ggttcctaag accatccaat 1920 atcccagcag tcccaatggc ccccaccaac gtggatacaa gaaacatgat tgatggatct 1980 atttctctta gattcaacag ttaccaacca gctccagatc caacccctgt tgcttataat 2040 cagcatgatg aggaagtacc ccctgatgaa gatgaagagc agatccgtaa tcataccatc 2100 gctttatggc gggaagatga cgaggtatgg gatacacttg gtgaaccttc gggcaaattt 2160 gatttttatg tccgttatac tcgacctgca catgctctac aagatcctgc tcatattgtt 2220 gctactggat gggatgacct tgacaatgat ccatccacct caagtccttc taataatatc 2280 cttacttacc tcaccccttc ttcctcttct gatgaggatg atgacatgtc ctatctccaa 2340 taccttgctc aacaatcacc tgttccttct cctacacagg atttcaccaa tcctttttcg 2400 gaaggtggtg gggaatctac ctacccttac ccctcatttc aaccaccatt cgaccttcaa 2460 tcagacgact catatggtac tttggcaact tggagtgaat atgatgctat gagtcaatca 2520 aacagtcctt catcacactc agatgctatt caacatctta gtttccagca cccaagtgca 2580 gatactgtcc ttgattttga cagatattct tttacaacaa gtgaggatga cgtggttcaa 2640 tcagcctgga tatctgaaaa tctatttcgt gaaaacaccg gaaacggtga agttcacaat 2700 cttgttccac ctagaccgga cacccctcgg ggtgatgagg tcaaaggaac tcaggaatcc 2760 atggcccata ctgttgcagt aaccacagag gaatcaaaac atgaggctga atttgactat 2820 ccggcttttg ccagattaca agcccatgaa gagtcagggc ggcccaaacc caaaactgag 2880 aaagtcttat cctcagcaat ttcttcatat accccaccaa cggatactgc aatgacacct 2940 gttgcgtacc ccccagccca aaatatagcc agcccaagtt acaatccaag cccacaaatg 3000 cccatgttcg aagggtatta tcccaaaagg ccaaatttta agagggataa tcatgccttt 3060 atcagtcttc cctcggccca acaaaatact ggggctttat tcattatgcc tcaacaaatt 3120 ggcctgtttc atgaggtttt tacttcatgg gaagctataa caaaggccta tgttgctcaa 3180 cagggtatca cagacccaag ggataaagcc gagttcattg aaaacatgtt gggtccaaca 3240 gaaaagataa tttggactca atggcgtatg ggctacgccg atgaatatga gaaccttgtt 3300 acaactgctg atggtcgtga gggtactcaa aatatactct ctcagatgcg aagggtcttt 3360 tccttagaag atccaaccac aggttcaact gcagtccaag atgaagccta cagagacttg 3420 gagaggctta cttgtgattc tgtcaagcat atagtccaat acttaaatga ctttatgcgg 3480 attgcagcaa agactgggcg catgttcata ggcccagaat tgagtgaaaa gttatggctt 3540 aaaatgccag gtgacctagg ccaaagaatg aagaaggcct atgaagaaaa acatccaggg 3600 aacattgttg gtgtttgccc tcggattctg tttgcttata agtaccttga aggcgaatgc 3660 aaagatgcag cgttcagacg ctccctgaaa aatctatcct tttgcagctc aatccctatc 3720 ccaggctatt acggtggtaa aagtggagag aaacgttatg gtgtaaggcg cacaaccact 3780 tataagggaa agcctcatag cacccatgca aggattgaaa agacaaaaca tttgcgcaat 3840 aaaaagtgca agtgttatct gtgtggggaa gaaggtcact tcgcccggga atgtccaaat 3900 gaccggcgaa atgtgaaacg agttgcaatg ttcgaaggtt tagacctccc agatgactgt 3960 gagatagtct ccatcgatga aggtgatcca gatagtgatg caatcttcag tatttccgaa 4020 ggagaagaag ctggaactct tgaagaacaa tgttttgtgt tccaggaaga atgcaatgga 4080 acatattggc ttggtaaaag aggtggatac caggatctcg tgcaaatctc taaggagatc 4140 tactattgcc agcatgaatg ggaggagaat caacccatta atgatccagc acatgttcgg 4200 tgttaccctt gtaaaaggga aaccactcag agagctcgct tacattgcaa gctatgccac 4260 ataacatctt gccttatgtg tggccccacc tatttcaaca aaaagattac tgtccagcca 4320 atgcctcaag cacccttcaa ccaaaaggga ttgttacagc aacagcagga gtacatcgcc 4380 tggtgcaata atgaaattgc caggttaaag gaagaagttg ctttttacaa gcagctcgcc 4440 caggagagag aattgcagtt gcaacttgag caatcaagga aggagctagc aggagtagac 4500 tctcgcaggc gaaaagacaa aggaatagta atcgatgaag ggtcatgcta cttcaatcct 4560 gaagaaacaa ccaggataat tgctcacggt gacacacaag ttaccaaaac tcgaccagtt 4620 aagaatatgc tctacaacat ggatgtgcga atggaaattc caggcatccc agcttttaca 4680 gtaaaggcga ttcttgacac aggagcaaca acctgctgta ttgacagcag aagtgtacca 4740 aaagatgccc ttgaagagaa ttcatttgtg gtaaatttct caggcatcaa ttccaagcaa 4800 caagtcaagc agaagcttaa aactggaaaa atgttcatca atgagcatta cttccggatc 4860 ccatattgtt acagctttga gatgcaaatt ggtgatggca tccaacttat ccttgggtgc 4920 aactttatac gaagtatgta tggtggtgta cgattagaag gtaatactat aaccttctac 4980 aagcagataa caagtatcaa caccaggctt gctgcacctc tccttaagca agaagaagag 5040 gagaaagaag aagaactcaa cctggaagag cacaggttga ttcaagaaat ggttgcatac 5100 tccactgagc ggccatttgt tcaattccaa caaaagtttg cagggcttat tcaagactta 5160 aaagcccagg gatacattgg ggaagagcct atgaagtatt gggccaaaaa ccaagttgtt 5220 tgccatctgg acattaaaaa cccagatatg gtaattgaag atcgcccact gaagcatgtg 5280 acaccccaga tggaagaaag ctttcgcaag catgtggaag ccctgttaaa aataggagca 5340 atccggccca gtaaaagtcg gcacagaacc acagctataa tagtcaactc tggaaccagc 5400 atagacccta ttacagggaa ggaggttaag ggaaaggagc gaatggtctt taactataaa 5460 aggttaaatg acctaactaa taaagatcag tacagccttc ctggaatcca gacgatcctg 5520 cagagattaa aggggagcac aatattttcc aaattcgacc taaaaagtgg ctttcatcag 5580 gtagcaatgc atccagattc aatagaatgg acagcttttt gggtgcccag cggtctttat 5640 gaatggttag ttatgccatt cggattaaag aatgctccag caatttttca aaggaaaatg 5700 gatcactgtt tcaaaggcac ggaggccttt attgccgtct acatcgacga catcctagta 5760 ttctcaaaga ctgaacagga tcatgagaag catttacaga ttatgctcgc tatctgtcaa 5820 aagaatgggc ttatcctaag cccaacaaag atgaaaattg cccaagctga aattgaattc 5880 cttggggcaa tcattcacaa agggcttatc aagttgcagc cccacattgt tcaaaagttg 5940 ctcactttta ccaataagca acttgaggag gttaaagggc ttagatcatg gctaggcctg 6000 ctaaactatg caaggagcta tattccccat atgggccgtc tacttagccc attatatgcc 6060 aaagtcagcc caactggtga gcggagaatg aacagacaag attgggccct gattgacaaa 6120 ataagagccc aagtccaaaa tctaccagcc ctggaattac cacctgcaga ctgtttcatc 6180 atcatcgaaa cggatggatg catggatggt tggggaggtg tctgcaaatg gaaagtagcg 6240 caatacgacc ctcgaagttc agaaagggtt tgtgcttatg caagtgggaa gttcaaccca 6300 ccaaagtcaa caattgatgc ggagatacat gcagtgatga acagcctcaa caacttcaaa 6360 atctattacc tagacaagtc cagtttatgt ttgaggactg actgtcaagc tattattagc 6420 ttctttaata agtccaatgt taacaaaccg tctagggtta gatggattgc tttcacagat 6480 ttccttactg gtctaggaat ccctgtaaat atagagcaca tagatggaaa aaataaccat 6540 ctggctgatg ctctgtccag attagtaact ggttttgttt ttgcagaacc acaatgtcaa 6600 gacaagttcc aggacgattt agggaaattg gaagcagctc ttcaggagaa gaaagaggct 6660 ccgcaagcaa tgcacgtaga atatgtctcc ctgttgatca gatcagcgga ccgcattacc 6720 cgctcgctct gctttatgag ggactcgtct cacagcagaa tttactcatg caggccaggc 6780 aaagaaccaa tgaaggcctt aatctgcgaa cagaagtcat gccaatccaa aggcgactta 6840 gggaatacga ggactgtgca ctccaagagt gcattcaatc agcaagacaa ctggtggccc 6900 tccaccagca caaactcgct tacatcagaa gcaaagctac aagggacaac gcatatgccg 6960 ataggctacc cacatgcaat cgggaccacg agcaactgtg tgaagtggtc gagctattag 7020 aaggaatctc ggaaagaatc agcgatacag ctgtctagga cagctggctt caattatgga 7080 gcgtgatgga cccccccgca ataatccaaa gtttggtgtg cttttagtag tgcgtcttta 7140 tggaccacta ctttattgta ataatcgatg ctttttgtag tgcgctcttc gtgcgctcta 7200 ctttatgctt ttgcttttgt aagtgcgctg taagtgcgcc tgtctttctt cagatgctta 7260 tcctttaagc atcttttgct ttttgcgtgg catcctttag ttcacaattt aaagaatgac 7320 gatggggccc aagatgtgca cccggttctc taaattgcct atataaggat atgccatagc 7380 cttgtttttg caagtcagga atacctgagc ataacttggc taagcaaaag tttgtaagtg 7440 ttctaagctt tcatttgtaa actttctgtt tggttttaat aaaatctctc gtcaatcgtt 7500 gtgaacatat attgtttgtt tgtattgttg tatcttattt gttgtggtga taatggtaa 7559 //