ID AF340024; SV 1; linear; genomic RNA; STD; VRL; 3599 BP. XX AC AF340024; XX DT 14-JUN-2001 (Rel. 68, Created) DT 18-JUN-2002 (Rel. 72, Last updated, Version 2) XX DE Pepino mosaic virus replicase gene, partial cds; and Orf2, Orf3, Orf4, and DE putative coat protein genes, complete cds. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-3599 RX DOI; 10.1007/s007050170015. RX PUBMED; 11811692. RA Mumford R.A., Metcalfe E.J.; RT "The partial sequencing of the genomic RNA of a UK isolate of Pepino mosaic RT virus and the comparison of the coat protein sequence with other isolates RT from Europe and Peru"; RL Arch. Virol. 146(12):2455-2460(2001). XX RN [2] RP 1-3599 RA Mumford R.A.; RT ; RL Submitted (24-JAN-2001) to the INSDC. RL Virology, Central Science Laboratory, Sand Hutton, York, North Yorkshire RL YO41 1LZ, UK XX DR MD5; d0b178ef748a36f0343914eec5c88364. DR EuropePMC; PMC3132167; 21702943. XX FH Key Location/Qualifiers FH FT source 1..3599 FT /organism="Pepino mosaic virus" FT /isolate="UK2" FT /mol_type="genomic RNA" FT /db_xref="taxon:112229" FT CDS <1..1599 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:Q8JV12" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q8JV12" FT /protein_id="AAK61863.1" FT /translation="APRVQILLDNHTQHCSDRVLYTCLSRAVDSIHFINTGPNNSEFWD FT KLESTPYLKAFIDTYRDEKTEMLNSKPADDSPAEPEAPLTHFPVSNGNNLEKLASALPE FT KFARELYDKHHGYSNTIQTENPVVQLFQHQQAKDETLFWATIEARLSITTPEANLREFV FT LKKDVGDILFFNYHNVMCLPADPVDFEPRTWEICAAEVKNTYLAKPMANLINAASRQSP FT DFDANKISLFLKSQWVKKVEKLGAVKSKPGQTIAAFMQQTVMLYGTMARYLRKMRQRFQ FT PKHIFINCETTTDNLNQFVKQGWNFNRTAQTNDFTAFDQSQDGAMLQFEVMKAKFFNIP FT ADIIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANTECSIAYTATRYHLDSTVKQVYA FT GDDMALDGVVQEKPSFKKLQNQLKLTSKTLFPKQVKGDYAEFCGWTFTPGGIIKNPLKM FT HASIMLQEAIGNLHTAARSYAIDMKHSYQVGDELHNYLTPDEAEQHFLAVRKLHKLHQG FT EAMRLGEKSPPKATH" FT CDS 1625..2329 FT /codon_start=1 FT /product="Orf2" FT /db_xref="GOA:Q8JV11" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q8JV11" FT /protein_id="AAK61864.1" FT /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIIEFFNPFEVDPTEHI FT SASEEEVLDFVPDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHIHK FT LTIGELNARSNS" FT CDS 2310..2681 FT /codon_start=1 FT /product="Orf3" FT /db_xref="GOA:Q8JJH7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q8JJH7" FT /protein_id="AAK61865.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH FT SCYNTHSATNNTQPLSGHH" FT CDS 2533..2787 FT /codon_start=1 FT /product="Orf4" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q8JV10" FT /protein_id="AAK61866.1" FT /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC FT QVTIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN" FT CDS 2826..3539 FT /codon_start=1 FT /product="putative coat protein" FT /db_xref="GOA:Q8JJF2" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q8JJF2" FT /protein_id="AAK61867.1" FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" FT 3'UTR 3560..3599 XX SQ Sequence 3599 BP; 1122 A; 846 C; 656 G; 975 T; 0 other; gcaccgagag tccaaatttt gcttgacaac cacacacaac actgctcaga cagggtgctg 60 tacacttgtc tctccagagc tgtggattcc atccacttta tcaatacagg cccaaacaat 120 tctgaatttt gggacaagct tgagtcaaca ccatacctca aagcatttat tgatacttac 180 agagatgaga aaacagaaat gctcaattct aagcctgctg atgacagtcc cgctgagcct 240 gaagctccat tgactcactt tccagtgtca aacggcaata acttggaaaa gttagcttca 300 gcgcttcctg aaaaatttgc aagagagtta tatgataaac accatggata ttctaataca 360 atccaaactg aaaatccagt ggtgcaactt ttccagcatc aacaagccaa agatgaaaca 420 cttttctggg caacaataga agctagactt tctattacaa ctccggaagc caacttacga 480 gaatttgtgc taaagaaaga tgttggagat atcttgtttt tcaattacca caatgtcatg 540 tgcttacctg ccgacccagt ggatttcgag ccaagaacat gggaaatatg tgctgctgaa 600 gttaaaaata catacttagc caaaccaatg gctaacttga tcaatgctgc tagcagacaa 660 tctcctgatt tcgacgctaa caaaatttcc ctgttcctaa aatctcaatg ggtcaagaaa 720 gtggaaaaat taggtgctgt caagtcaaag cctggccaga ccattgcagc tttcatgcaa 780 caaacagtga tgttgtatgg gaccatggcc agatacctca gaaagatgag acaaagattt 840 caaccaaaac atattttcat caattgtgaa acaacaactg ataatctgaa ccaatttgtt 900 aaacaaggtt ggaactttaa cagaacagct cagacaaatg atttcacagc ttttgaccaa 960 tcacaagatg gtgcaatgct tcaatttgaa gtcatgaagg caaaattctt caatatccct 1020 gccgacatca ttgaaggata catcaacatc aaattgaacg ccaaaatttt ccttggcacc 1080 ttgtccatca tgaggttgtc tggtgaaggt ccaacttttg atgccaacac agaatgttcg 1140 atagcatata ctgctacaag ataccatctt gattcaacag tcaagcaggt ttatgctgga 1200 gatgatatgg cattagatgg agttgttcaa gaaaaaccct cttttaaaaa actacagaac 1260 cagcttaaac tcacctcaaa gacactattt ccaaaacagg ttaaaggtga ttatgctgaa 1320 ttctgtggtt ggactttcac tcctggtggt atcattaaaa accctttgaa aatgcatgct 1380 tccattatgt tgcaagaggc aatcggcaat ttacacactg ctgccagatc atatgccatt 1440 gacatgaagc attcatacca agtgggtgat gagctgcaca attacttaac accagatgaa 1500 gctgaacaac acttccttgc tgttcggaag ttgcacaagt tacaccaagg agaagcaatg 1560 agacttggtg aaaagagccc tccaaaagca acacattgag gggttaagtt ttccccagtt 1620 cgaaatggaa agatcaactc tgattaattt acttcaattg caccacttcg agccaaaact 1680 cagtgttgaa ggaatcatag ttgtgcacgg aattgcaggc actgggaaaa ccactttact 1740 taggacttta ttttctgctt accctagctt agttataggt tcacctaggc cttgctattt 1800 agataaacaa aataaaattt cacaagtttg cttatcttgc tttcccaata cccattgtga 1860 tattgtcgat gagtatcatt tgctagaaag ttttccagaa ccaaaattgg ctatctttgg 1920 tgacccctgt caatgcacat acattgagag acttagagtc ccacattaca cttccttcag 1980 aactcataga tttggaaagt caactgctga gattttgaac aaactgttcg accttaatat 2040 agtctcagtt aagaaagaag acgacatcat tgaattcttt aacccttttg aagttgaccc 2100 cactgagcat atctcagcct ctgaagaaga agtcttggac tttgtccctg accaagtggt 2160 gaccactagc tcagaggaac tagcaggact tgagtttgca gaaacaactt tctactgcac 2220 aacattggcc gcagctgttg ctgaaaatcc tgctaagact ttcatctctc tgactagaca 2280 catccacaaa ctcaccattg gggaactaaa tgccaggtct aactcctaga gctgacctca 2340 ctgacacata caaaatcatt gccattgctt tcttgttgtc agcttgcatt tacttccaaa 2400 atagccacta ccaacctgtt gctggagaca acttgcaccg tttgcctttt ggtggccaat 2460 atcaagacgg caccaaaaag atatcttatt ttccacaaca gcagtcatac tttcattctg 2520 gaaacaaatt aaatgtcctc atacttatct tcattctcac attgggtatt gtcctcacca 2580 ataaatttag ttttagcttt agtcgtacta ctcaccagca ttcttgctat aacacacatt 2640 cagcaaccaa caatacacaa ccattgtcag gtcaccattg acggtgctgc aatagtcata 2700 acaaattgtg agaacacacc agaagtgctt aaagcaatca acttctcccc ttggaacggg 2760 ttaagttttc ctaaatttga aaattaatat tgagtgttca caaaaatcaa cttcaataaa 2820 caatcatgcc tgacacaaca cctgttgctg ccacttcaag tgcaccaccc acagccaaag 2880 atgctggtgc caaagctcct tctgacttct caaatcccaa tacagctcct agtctcagtg 2940 atttgaagaa agtcaagtat gtctccaccg tgacctccgt ggccacacca gctgaaattg 3000 aagccctagg caaaatcttc accgctatgg gccttgccgc caatgagact ggtccggcca 3060 tgtgggatct agctcgtgca tatgctgatg tgcagagttc taaatcggca cagctgattg 3120 gagctacccc ttccaaccct gcactatcac gccgagccct tgctgctcag tttgatcgaa 3180 tcaatataac tcccaggcaa ttttgcatgt actttgccaa agttgtttgg aacatacttc 3240 tcgacagcaa cattccacca gcaaattggg ccaaacttgg ttaccaagaa gatacaaaat 3300 ttgctgcatt tgacttcttc gatggagtca ccaaccctgc cagcctgcag cctgctgatg 3360 gtcttatcag gcagccaaat gaaaaagaac tagctgctca ctccgtagct aagtacggcg 3420 ccttggctag gcaaaagatc tccacaggta attatattac cacacttgga gaagtcacac 3480 gtggacacat gggaggagct aacaccatgt acgcgataga cgcaccccct gaactttaaa 3540 cactcgaaac ttaatcagag tggggttttc tacagtttat tttcctaatt atttctttg 3599 //