ID AF329889; SV 1; circular; genomic DNA; STD; VRL; 2690 BP. XX AC AF329889; XX DT 19-JUL-2001 (Rel. 68, Created) DT 31-AUG-2025 (Rel. 144, Last updated, Version 9) XX DE Maize streak virus - [Raw], complete genome. XX KW . XX OS Maize streak virus OC Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; OC Geplafuvirales; Geminiviridae; Mastrevirus; Mastrevirus storeyi. XX RN [1] RP 1-2690 RX DOI; 10.1006/viro.2001.1075. RX PUBMED; 11601896. RA Martin D.P., Willment J.A., Billharz R., Velders R., Odhiambo B., RA Njuguna J., James D., Rybicki E.P.; RT "Sequence diversity and virulence in Zea mays of Maize streak virus RT isolates"; RL Virology 288(2):247-255(2001). XX RN [2] RP 1-2690 RA Martin D.P., James D., Rybicki E.P.; RT ; RL Submitted (20-DEC-2000) to the INSDC. RL Microbiology, University of Cape Town, Private Bag, Cape Town, WC 7000, RL South Africa XX DR MD5; 22a3e1dff700ffafd42507cbd725ed80. XX FH Key Location/Qualifiers FH FT source 1..2690 FT /organism="Maize streak virus" FT /strain="MSV-D" FT /isolate="MSV-Raw" FT /mol_type="genomic DNA" FT /geo_loc_name="South Africa" FT /note="isolated in 1998 from severely infected Urochloa" FT /db_xref="taxon:10821" FT misc_feature join(1..2,2683..2690) FT /note="conserved nonanucleotide at origin of (+) strand FT replication" FT stem_loop 19..2664 FT gene 151..456 FT /gene="V1" FT CDS 151..456 FT /codon_start=1 FT /gene="V1" FT /product="movement protein" FT /note="MP; facilitates intercellular movement of viral DNA" FT /protein_id="AAK73471.1" FT /translation="MDPQSAIYTLPRVPTAAPTTGGVSWSHVGEVAILSFVALICIYLL FT YLWVLRDLILVLKARRGRSTEELIFGSEAVDRRHPIPNTLVPTAPVHPGPFVPGQG" FT gene 467..1207 FT /gene="V2" FT CDS 467..1201 FT /codon_start=1 FT /gene="V2" FT /product="coat protein" FT /note="nuclear localized ss/ds DNA binding protein" FT /protein_id="AAK73472.1" FT /translation="MSTSKRKRADEAQWNKRSTKKKGSAPQAKKPGGKGERPSLQIQTL FT LHSGDTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKVGVDYHFVADAASCKYSNR FT GTGVMWLVYDTTPGGNAPTTQDIFAYPSALKAWPTTWKVSRELCHRFVVKRRWLFTMET FT DGRIGSDTPPSNQSWPPCKRNVDFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYLVIAP FT GNGITFTAHGQTRLYFKSVGNQ" FT regulatory 1203..1207 FT /gene="V2" FT /regulatory_class="polyA_signal_sequence" FT gene complement(1217..2525) FT /gene="C1/C2" FT regulatory complement(1217..1221) FT /gene="C1/C2" FT /regulatory_class="polyA_signal_sequence" FT primer_bind 1274..1350 FT /note="origin of (-) strand replication" FT CDS complement(join(1366..1791,1884..2525)) FT /codon_start=1 FT /gene="C1/C2" FT /product="Rep" FT /note="replication initiator/associated protein; required FT for initiation and termination of viral DNA replication" FT /protein_id="AAK73474.1" FT /translation="MTSSSSNRQFLHRTANTFLTYPQCPEHPEIISQRIWDLVGRWNPL FT YIICAQEAHEDGNMHLHALIQTDKQVRTTDSRFFDIDGFHPNIQSAMSPNKVRDYILKE FT PLALFERGTFVPRKKTFLGNSSKGNSEKKPSKDEIMQDIISHATSKPEYLSMVRKSFPY FT DWATKLQYFEYSANKLFPDIQEEFINPHPTSEPDLLCNESIKDWLQPNIYQQADNGSRK FT QSLYIVGPTRTGKSTWARSLGRHNYWQNNVDWSSYNEDAIYNIVDDIPFKYCPCWKQLV FT GCQKEFVVNPKYGKKKKVQMKSKPTIILANSDEDWMKEMTPGQLEYFEANCMIYIMSPG FT EKWYSPPQLPPTEEV" FT gene complement(1707..2525) FT /gene="C1" FT CDS complement(1707..2525) FT /codon_start=1 FT /gene="C1" FT /product="RepA" FT /note="replication initiator/associated protein ORFA; FT possibly involved in cell cycle regulation" FT /protein_id="AAK73473.1" FT /translation="MTSSSSNRQFLHRTANTFLTYPQCPEHPEIISQRIWDLVGRWNPL FT YIICAQEAHEDGNMHLHALIQTDKQVRTTDSRFFDIDGFHPNIQSAMSPNKVRDYILKE FT PLALFERGTFVPRKKTFLGNSSKGNSEKKPSKDEIMQDIISHATSKPEYLSMVRKSFPY FT DWATKLQYFEYSANKLFPDIQEEFINPHPTSEPDLLCNESIKDWLQPNIYQVSPQAYML FT LQPNCYTVDDAISDLQWLDDLTSKQIMDQESRASTSSVQQGQENLLGPEA" FT repeat_region 2596..2600 FT /note="iteron" FT regulatory 2643..2662 FT /regulatory_class="GC_signal" XX SQ Sequence 2690 BP; 674 A; 606 C; 699 G; 711 T; 0 other; actgcgcctc tttacctgcg agggcccggt agggaccgag cgtctttgat ttaaagcttg 60 gatctgcttt gtcgtatttt ttcaaagctg ccatgtttaa agaatccgtc cacatccgac 120 tataaattgt ctcacaagtg cgattcattc atggatcctc agagtgcgat ctatactttg 180 cctcgggtac ccacagcagc tccgaccacc ggaggtgtgt cgtggagtca cgtcggcgag 240 gtagctatac tgagctttgt tgctttgatt tgcatttatc tgctttacct ttgggtgttg 300 agagatctta tcttagttct gaaggcaaga cgcgggaggt ccacggagga gctgatattt 360 ggatctgaag ctgtggatag gaggcatcct atccctaata ctttggtacc aacagctccg 420 gtgcatcccg gaccattcgt tcctggtcag ggataagcag taagccatgt cgacgtccaa 480 gaggaagcgc gccgatgaag cgcaatggaa taagcggtcc accaagaaga aaggttctgc 540 gccgcaggcg aagaaacctg ggggtaaggg tgagaggcct tccctccaga tacagacttt 600 actccactca ggtgacacga tgatcaccgt accgtcaggt ggggtctgtg acctcatcaa 660 tacatatgcc cgagggtctg atgagggcaa ccggcacacc agcgaaaccc taacgtacaa 720 agttggggtc gactaccact tcgtcgctga cgccgcatcc tgcaagtact ccaatcgcgg 780 aacaggtgtg atgtggctgg tgtacgacac tactcccggc ggaaacgcac ccaccaccca 840 ggatattttc gcatacccct ccgcactaaa ggcctggccg actacttgga aagttagtcg 900 ggagttgtgt catcgcttcg tggtgaagcg gcgatggctc ttcacaatgg agaccgacgg 960 tcggataggc tcggatacac caccgagcaa ccagagttgg ccgccatgta agcggaacgt 1020 tgacttccac aagttcacta gcgggttggg agtgaggacg cagtggaaga acgtcacaga 1080 cggtggagtt ggagcgatac agaggggtgc tctgtatcta gtcattgccc ccggcaatgg 1140 tattacgttt actgcccatg ggcagacacg tctgtacttt aagagtgttg gcaaccagta 1200 atgaataaaa ctgcgtttta ttatatctga tgaatgctga aagcttacat tgatatgtcg 1260 tgggatgcca cgaaaaacac acaaacaata cagggcggac aggacaaagc aggcggcgta 1320 tgggcgcgcc cggggcaaca acttaaaaaa aaaccgataa tcgaattaaa cttcctccgt 1380 aggaggaagc tgagggggag aataccattt ctcacccggc gacataatgt aaatcatgca 1440 gtttgcctcg aaatactcca gctgccctgg agtcatttcc ttcatccaat cctcatccga 1500 gttggcgagg atgatagttg gtttagactt catctgaacc ttctttttct tcccgtattt 1560 tggatttaca acgaattctt tttgacagcc aaccaactgt ttccagcaag gacaatattt 1620 aaaagggata tcatctacga tgttgtagat tgcgtcttcg ttgtatgaag accaatcaac 1680 attattttgc cagtaattat gacgtcctaa gcttctggcc caagtagatt ttcctgtcct 1740 tgttggaccg acgatgtaga ggctctgctt tcttgatcca ttatctgctt gctggttaaa 1800 tcatccagcc attgaagatc agaaatagcg tcgtcgacgg tataacagtt tggttgaaga 1860 agcatgtaag cttggggact gacctggtat atgttaggtt gcaaccaatc tttgattgat 1920 tcgttgcata gcaagtctgg ttcggaggta gggtgaggat tgatgaactc ttcctgaata 1980 tcaggaaaca gtttgtttgc tgagtactcg aagtactgga gtttagtggc ccaatcataa 2040 gggaatgatt ttcggaccat ggagaggtac tcaggctttg aagtagcatg agaaataatg 2100 tcttgcatta tttcatcttt agatggtttt ttttctgaat ttccctttga ggagtttcct 2160 aggaatgttt tcttcctagg aacgaaagta cctctctcga acaaagccag aggttccttg 2220 aggatgtaat ctcttacctt gttagggctc atggcgctct gaatgtttgg gtggaaacca 2280 tctatgtcga agaacctgga gtcggtggtt ctcacttgtt tatccgtctg tattaatgca 2340 tgtaaatgca tatttccatc ctcatgtgcc tcttgggcac atatgatgta cagaggattc 2400 caacgaccaa cgagatccca gatcctctga ctgatgattt caggatgttc tggacactgt 2460 ggataagtga ggaatgtgtt tgcagtccta tgtaggaact gacggttgga tgaggaggag 2520 gtcatatccg acgacggagg ctcaagctag gagaaggcag ggaagggagc tcgcgaaact 2580 ctatactgat acctcgcgcc gatgaaatcc gccgccgccc ccttttatag ttgttctatt 2640 atgggccgga ccgggccggc ccagcaggta aagaggcgcg caataatatt 2690 //