ID AF329888; SV 1; circular; genomic DNA; STD; VRL; 2689 BP. XX AC AF329888; XX DT 19-JUL-2001 (Rel. 68, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Maize streak virus - E[Pat] isolate MSV-Pat, complete genome. XX KW . XX OS Maize streak virus - E[Pat] OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2689 RX DOI; 10.1006/viro.2001.1075. RX PUBMED; 11601896. RA Martin D.P., Willment J.A., Billharz R., Velders R., Odhiambo B., RA Njuguna J., James D., Rybicki E.P.; RT "Sequence diversity and virulence in Zea mays of Maize streak virus RT isolates"; RL Virology 288(2):247-255(2001). XX RN [2] RP 1-2689 RA Martin D.P., James D., Rybicki E.P.; RT ; RL Submitted (20-DEC-2000) to the INSDC. RL Microbiology, University of Cape Town, Private Bag, Cape Town, WC 7000, RL South Africa XX DR MD5; 3d966b339fe4412e6b674aeeafbe429a. DR EuropePMC; PMC1262190; 16244707. XX FH Key Location/Qualifiers FH FT source 1..2689 FT /organism="Maize streak virus - E[Pat]" FT /strain="MSV-E" FT /isolate="MSV-Pat" FT /mol_type="genomic DNA" FT /country="South Africa" FT /note="isolated in 1999 from severely infected Digitaria" FT /db_xref="taxon:268331" FT misc_feature join(2682..2689,1..2) FT /note="conserved nonanucleotide at origin of (+) strand FT replication" FT stem_loop 19..2664 FT gene 150..455 FT /gene="V1" FT CDS 150..455 FT /codon_start=1 FT /gene="V1" FT /product="movement protein" FT /note="MP; facilitates intercellular movement of viral DNA" FT /db_xref="GOA:Q91MG4" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/Swiss-Prot:Q91MG4" FT /protein_id="AAK73467.1" FT /translation="MDPQSAVYSLPRVPTAAPPNAGVPWSHVGEVAVLSFVALICIYLL FT YLWVLRDLILVLKARRGRSTEELIFGSEAVDRRSPIPNTLEPTAPVHPGPFVPGSG" FT gene 466..1207 FT /gene="V2" FT CDS 466..1200 FT /codon_start=1 FT /gene="V2" FT /product="coat protein" FT /note="nuclear localized ss/ds DNA binding protein" FT /db_xref="GOA:Q91MG3" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/Swiss-Prot:Q91MG3" FT /protein_id="AAK73468.1" FT /translation="MSTSKRKRADEVQWNKRSTKKKASAPPVKKTGGKADRPSLQIQTL FT LHSGDTMITVPSGGGCDLISTYARGSDEGNRHTSETLTYKVGVDYHFVADAGACRYSNR FT GTGVMWLVYDTTPGGNSPSTKDIFAYPDALVAWPTTWKVSRELCHRFVVKRRWLFTMET FT DGRIGSDIPPTNQSWPPCKRNIDFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGVTFTAHGQTRLYFKSVGNQ" FT regulatory 1203..1207 FT /gene="V2" FT /regulatory_class="polyA_signal_sequence" FT gene complement(1217..2520) FT /gene="C1/C2" FT regulatory complement(1217..1221) FT /gene="C1/C2" FT /regulatory_class="polyA_signal_sequence" FT primer_bind 1274..1349 FT /note="origin of (-) strand replication" FT CDS complement(join(1364..1789,1882..2520)) FT /codon_start=1 FT /gene="C1/C2" FT /product="Rep" FT /note="replication initiator/associated protein; required FT for initiation and termination of viral DNA replication" FT /db_xref="GOA:Q91MG2" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q91MG2" FT /protein_id="AAK73470.1" FT /translation="MASSSSNRSFLHRNANTFLTYPHCPENPEIISQKLWDLVARWNPL FT YIVCAREAHRDGNMHLHALLQTDKPVRTTDARIFDIEGFHPNIQSAKSVNKVRDYILKE FT PLAVFERGTFIPRKSCFQGNTPPFPKKNPNKDEIMAHIISHATSKQEYLCLVRKEFPYD FT WATKLQYFEYSANKLFPDIQEEFISPHPPSSPDLLCNESIKDWLQPNIYQPADEGSRKQ FT SLYIVGPTRTGKSTWARSLGLHNYWQNNVDWSSYNEDAIYNIVDDIPFKYCPCWKQLVG FT CQKEFVVNPKYGKKKKVQMKSKPTIILANSDEDWMKEMTPGQLEYFEANCMIYVMSPGE FT KWYSPPQLPPTEEV" FT gene complement(1705..2520) FT /gene="C1" FT CDS complement(1705..2520) FT /codon_start=1 FT /gene="C1" FT /product="RepA" FT /note="replication initiator/associated protein ORFA; FT possibly involved in cell cycle regulation" FT /db_xref="GOA:Q91MG1" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/Swiss-Prot:Q91MG1" FT /protein_id="AAK73469.1" FT /translation="MASSSSNRSFLHRNANTFLTYPHCPENPEIISQKLWDLVARWNPL FT YIVCAREAHRDGNMHLHALLQTDKPVRTTDARIFDIEGFHPNIQSAKSVNKVRDYILKE FT PLAVFERGTFIPRKSCFQGNTPPFPKKNPNKDEIMAHIISHATSKQEYLCLVRKEFPYD FT WATKLQYFEYSANKLFPDIQEEFISPHPPSSPDLLCNESIKDWLQPNIYQVSPEAYMLL FT QPTCYTVDEAISDLTWMDNLSSQQMKDQESRASTSSVQQGQGNLLGPEV" FT repeat_region 2590..2597 FT /note="iteron" FT regulatory 2633..2661 FT /regulatory_class="GC_signal" XX SQ Sequence 2689 BP; 663 A; 615 C; 719 G; 692 T; 0 other; accgcgcctt ctttcctgcg agggcccgca gggaccgagc gtctttgatt taaaggtttg 60 atctgctttg gtggattttt ccaaagcagc cgtgtttaaa gaaaccggtc ccgtctcact 120 ataaattgtc taacaagtgc gattcattca tggatcccca gagtgctgtt tactctttgc 180 cgcgggtacc cacagcagct ccgcccaacg caggagtgcc gtggagtcac gtcggcgagg 240 tagctgtttt gagctttgtt gctttgattt gcatttactt gctttacctt tgggtgctga 300 gagatcttat cttagtcttg aaggcaagac gcgggaggtc cacggaggag ctgatatttg 360 gatctgaagc tgtggatagg aggagtccta tccctaatac tttggaacca acagctccag 420 tgcatcccgg accatttgtt cctggttcgg gataagcagt gagccatgtc gacgtccaag 480 aggaagcgtg ccgacgaggt gcagtggaat aagaggtcca ccaagaagaa agcttctgca 540 ccgccggtga agaagactgg gggtaaggct gacaggcctt ccctccagat acagactcta 600 ctccactcgg gggacaccat gataaccgta ccgtcaggtg ggggctgtga cctcatcagt 660 acatatgccc gaggatccga tgagggcaac cgtcacacca gcgaaaccct aacgtacaaa 720 gttggggtcg actaccactt cgtcgccgac gcaggagcct gcagatactc caaccgcgga 780 acaggtgtga tgtggctggt gtacgacact acccccggcg gaaactcacc gtccacgaag 840 gacatcttcg cctatccgga tgcactagta gcttggccga cgacttggaa agttagtcgg 900 gagttgtgtc accgcttcgt ggtgaagcgg cgatggctct tcacaatgga gaccgacggt 960 cgaattggtt cggatatccc tccgaccaat cagagttggc cgccatgtaa gcggaacata 1020 gacttccaca agttcactag cgggttggga gtgaggacgc agtggaagaa tgtaacagac 1080 ggtggggtcg gtgcgataca gagaggggct ctgtatatgg tcattgcccc tggcaatggt 1140 gtaacgttta ctgcccatgg gcagacacgt ctgtacttca agagtgtggg caaccagtaa 1200 tgaataaaac cccgttttat tatacctgat gaatgccgaa agcttacatt aatatgtcgt 1260 gcgatggcac gaaaacacgc tatcaataca ggggggtcgg ggcaaagcag gcggctatag 1320 ggcgcccccg gggcaaaaca ttaaaaaaac accgatatat gaattacact tcctccgtag 1380 gaggaagctg agggggagaa taccatttct cccccggcga cataacataa atcatgcagt 1440 ttgcttcgaa atactccagt tgccctggag tcatttcctt catccagtct tcatccgagt 1500 tggcgaggat tattgtaggt ttagacttca tctgaacctt cttcttcttg ccatatttag 1560 gatttacaac gaactccttt tggcagccaa ctaactgttt ccaacaagga caatatttaa 1620 aagggatatc atctacgatg ttatagattg cgtcttcgtt gtaggaagac caatcaacat 1680 tattttgcca gtaattatga agccctaaac ttctggccca agtagatttc cctgtccttg 1740 ttggaccgac gatgtagagg ctctgctttc ttgatccttc atctgctggc tggataagtt 1800 atccatccat gttagatctg aaattgcttc atcgacggta taacaggtag gttgaagaag 1860 catgtatgct tcgggactga cctgatagat gttaggctgg agccaatctt tgattgactc 1920 attacaaagc agatcaggtg aagagggtgg atgaggactg atgaactctt cctgaatgtc 1980 aggaaagagt ttgtttgcag agtattcgaa atactgcaat ttggtggccc agtcgtaagg 2040 gaattccttc cgaaccaagc agaggtactc ttgcttggaa gtggcgtgag aaataatgtg 2100 tgccattatt tcatctttgt ttgggttttt tttcgggaag gggggagtat ttccttggaa 2160 gcatgacttc cgaggaatga aagtacctct ctcaaatact gccagtggtt ccttgagaat 2220 gtagtcgcgt accttgttta cggacttagc actctgaatg tttgggtgga atccttctat 2280 gtcgaaaatc ctggcatcgg tcgtcctcac tggtttatcc gtctgtagta atgcatgtaa 2340 gtgcatattt ccatcacgat gtgcctctcg ggcacatacg atgtacagag gattccaacg 2400 agcgacgaga tcccatagtt tctgactgat gatttctgga ttttctggac agtgtggata 2460 tgtgaggaat gtgtttgcat tcctgtgtaa gaacgaacgg ttggatgagg aggaggccat 2520 atccgacgac ggaggctagt tgctagctca aggcagaaac gggagctccc aaactctatg 2580 taaccgggtg cgccttcgaa atccgccgcc cctatttata gacgatttag ctgggccgga 2640 acgggccagg ccggccggcc cagcaggaaa gaaggcgcgc actaatatt 2689 //