ID AF329887; SV 1; circular; genomic DNA; STD; VRL; 2683 BP. XX AC AF329887; XX DT 19-JUL-2001 (Rel. 68, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Maize streak virus - B[Jam], complete genome. XX KW . XX OS Maize streak virus - B[Jam] OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2683 RX DOI; 10.1006/viro.2001.1075. RX PUBMED; 11601896. RA Martin D.P., Willment J.A., Billharz R., Velders R., Odhiambo B., RA Njuguna J., James D., Rybicki E.P.; RT "Sequence diversity and virulence in Zea mays of Maize streak virus RT isolates"; RL Virology 288(2):247-255(2001). XX RN [2] RP 1-2683 RA Martin D.P., James D., Rybicki E.P.; RT ; RL Submitted (20-DEC-2000) to the INSDC. RL Microbiology, University of Cape Town, Private Bag, Cape Town, WC 7000, RL South Africa XX DR MD5; 512e45e40e272b472c31d42c04a76e30. DR EuropePMC; PMC1262190; 16244707. XX FH Key Location/Qualifiers FH FT source 1..2683 FT /organism="Maize streak virus - B[Jam]" FT /strain="MSV-B" FT /isolate="MSV-Jam" FT /mol_type="genomic DNA" FT /country="Kenya" FT /note="isolated in 1998 from mildly infected maize" FT /db_xref="taxon:268329" FT misc_feature join(2676..2683,1..2) FT /note="conserved nonanucleotide at origin of (+) strand FT replication" FT stem_loop 20..2657 FT gene 150..455 FT /gene="V1" FT CDS 150..455 FT /codon_start=1 FT /gene="V1" FT /product="movement protein" FT /note="MP; facilitates intercellular movement of viral DNA" FT /db_xref="GOA:Q91MG8" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:Q91MG8" FT /protein_id="AAK73463.1" FT /translation="MDPQNTLFVQPRVPTAAPRPGGVPWSALGEVAILSFVGLICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGIQAVDRSNPIPNTQAPPSQGNPGPFVPGTG" FT gene 466..1207 FT /gene="V2" FT CDS 466..1200 FT /codon_start=1 FT /gene="V2" FT /product="coat protein" FT /note="nuclear localized ss/ds DNA binding protein" FT /db_xref="GOA:Q91MG7" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:Q91MG7" FT /protein_id="AAK73464.1" FT /translation="MSTAKRKRGDDANWNKRSTKKKPASAGLKKAGAKADRPSLQIQTL FT QHAGSTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVAERQACKYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT regulatory 1203..1207 FT /gene="V2" FT /regulatory_class="polyA_signal_sequence" FT gene complement(1213..2523) FT /gene="C1/C2" FT regulatory complement(1213..1219) FT /gene="C1/C2" FT /regulatory_class="polyA_signal_sequence" FT primer_bind 1275..1347 FT /note="origin of (-) strand replication" FT CDS complement(join(1364..1789,1882..2523)) FT /codon_start=1 FT /gene="C1/C2" FT /product="Rep" FT /note="replication initiator/associated protein; required FT for initiation and termination of viral DNA replication" FT /db_xref="GOA:Q91MG6" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q91MG6" FT /protein_id="AAK73466.1" FT /translation="MASSSSNRQFSHRNVNTFLTYPHCPENPEIVCQMIWELVGRWTPK FT YIICAREAHKDGDMHLHALVQTDKPVRITDSRFFDINGFHPNIQSAKSVNKVRDYILKE FT PLALFERGTFIPRESSFLGNPSKGNSEKKPSKDEIMREIISHSTSKLEYLSLVRKEFPY FT DWATKLQYFEYSANKLFPEIQEEFISPHPPSSPDLLCNESIKDWLQPNIYQPTDERTRK FT QSLYIVGPTRTGKSTWARSLGVHNYWQNNVDWSSYNEDAIYNIVDDIPFKYCPCWKQLV FT GCQKEFVVNPKYGKKKKVQMKSKPTIILANSDEDWMKEMTPGQLEYFEANCMIYIMSPG FT EKWYSPPVLPPTEAV" FT gene complement(1705..2523) FT /gene="C1" FT CDS complement(1705..2523) FT /codon_start=1 FT /gene="C1" FT /product="RepA" FT /note="replication initiator/associated protein ORFA; FT possibly involved in cell cycle regulation" FT /db_xref="GOA:Q91MG5" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q91MG5" FT /protein_id="AAK73465.1" FT /translation="MASSSSNRQFSHRNVNTFLTYPHCPENPEIVCQMIWELVGRWTPK FT YIICAREAHKDGDMHLHALVQTDKPVRITDSRFFDINGFHPNIQSAKSVNKVRDYILKE FT PLALFERGTFIPRESSFLGNPSKGNSEKKPSKDEIMREIISHSTSKLEYLSLVRKEFPY FT DWATKLQYFEYSANKLFPEIQEEFISPHPPSSPDLLCNESIKDWLQPNIYQVSPESYML FT LQPTCYTLEDAISDLEWMDKLSSQQMKEQESRASTSSVQQELENLLGPEA" FT repeat_region 2590..2597 FT /note="iteron" FT regulatory 2635..2654 FT /regulatory_class="GC_signal" XX SQ Sequence 2683 BP; 704 A; 616 C; 672 G; 691 T; 0 other; accgcgcctt ctttttctgc gagggcccga agggaccgag cgatttgatt taaagttcgg 60 ttctgctttg tctgatttat ctaaagcagt ccaatctaaa gaaaccggtc ccctgcgact 120 ataaattgcc tcacaagtgc gattcattca tggatccaca gaatacctta tttgttcagc 180 cgcgggtacc cacagcagct ccgagacccg gaggagtgcc gtggagtgcg ctcggcgagg 240 tagcaatttt gagctttgtt ggattgattt gcttttacct gctttacctt tgggtgctga 300 gagatcttat cttagttttg aaggctcgac aaggcagatc cacggaggag ctgatatttg 360 gaatacaagc tgtggatagg agtaatccta tccctaatac acaagcacca ccaagtcagg 420 ggaatcccgg accgtttgta cccgggacgg gataagcaat cagccatgtc tacggccaag 480 aggaagcgag gagatgatgc gaactggaat aagcggtcga ctaagaagaa gcctgcttca 540 gctggtctga agaaggctgg agcgaaggcc gataggccat ccctccagat ccagacactc 600 cagcatgctg ggtccaccat gataacagtc ccctccggag gagtatgtga cctcatcaac 660 acctatgccc gaggatccga cgagggcaac cgccacacca gcgagactct gacgtacaag 720 attgcggtcg actaccactt cgtcgcagag cggcaagcct gcaagtactc caacaccgga 780 accggtgtga tgtggctggt gtatgacacc actcccggcg gacaagcgcc gaccccgcaa 840 accatatttg cctacccgga cacgctgaaa gcttggccgg caacatggaa agtgagccgg 900 gagctgtgtc atcgcttcgt ggtgaaacgg cgatggttgt tcaacatgga gaccgacggt 960 cgaattggtt cggacatccc tccttcgaat gcaagttgga agccgtgcaa gcgcaacatc 1020 tacttccaca agttcacgag tgggttggga gtgagaacgc agtggaagaa tgtaacggac 1080 ggaggagttg gtgcgataca gagaggagcc ttgtacatgg tcattgcccc tggcaatggc 1140 cttacattta ctgcccatgg gcagacccgt ctgtacttta agagtgttgg caaccagtaa 1200 tgaataaaaa ctccgtttta ttatatctga tgaatgctca aagcttacat taatatgtcg 1260 tgcgatggca cgaaaaacac actatcaata caggggggag gtagccggcg gctaagggaa 1320 cgaagttcgt gggcaaaaca tcaaaaaaac aagagcaatc gaattaaact gcctccgtag 1380 gaggcagcac agggggagaa taccacttct cccccggcga cataatataa atcatgcagt 1440 ttgcttcgaa atactccagc tgccctggag tcatttcctt catccagtct tcatccgagt 1500 tggcgaggat aattgtaggc ttagacttca tctgcacttt cttcttcttt ccatattttg 1560 gatttacaac gaactctttc tgacagccaa ctaactgttt ccaacaagga cagtatttaa 1620 atggaatatc atctacgatg ttgtagattg cgtcttcgtt gtaagaagac caatcaacat 1680 tattttgcca gtaattatga acccctaggc ttctggccca agtagatttt ccagttcttg 1740 ttggaccgac gatgtagagg ctctgctttc ttgttctttc atctgttggc tggataattt 1800 atccatccat tcaaggtcag agatagcatc ttcgagggta taacaggttg gttgaagaag 1860 catatatgat tctggactaa cctgatagat gtttggctgg agccaatctt tgattgactc 1920 attacaaaga agatcaggtg aagatggtgg atgaggactg atgaactctt cctgaatctc 1980 aggaaacaat ttatttgcag agtattcaaa atactgcaat tttgtggccc agtcataggg 2040 gaattcttta cgaaccaagg agaggtactc aagctttgaa gtggagtgtg aaataatctc 2100 tctcattatt tcatcttttg aaggtttctt ttcagaattc cccttggaag gatttcctag 2160 gaagcttgac tccctgggaa tgaaagtacc tctctcaaac aaagccagag gttccttgag 2220 aatgtaatcc ctgactttgt ttacagattt tgcactctga atgtttgggt ggaacccgtt 2280 gatatcaaag aaccttgagt cagtgattct taccggctta tctgtctgga ctaatgcatg 2340 taaatgcata tctccatctt tgtgtgcctc tcgggcacat ataatatact taggggtcca 2400 acgaccgacg agctcccaaa tcatctgaca gacgatttct ggattttctg gacagtgtgg 2460 atatgttaag aacgtgttaa cgttcctgtg tgagaactga cggttggatg aggaggaggc 2520 catatcggac gactccgagc agcttgccgg atggcaggat gggagctcca aactctatat 2580 caaccgggtg cgccttcgaa atccgccgct cccctcttta tagtggttgt ttttgggccg 2640 gaccgggccg gcccagcagg aaaagaaggc gcgcaataat att 2683 //