ID AF329886; SV 1; circular; genomic DNA; STD; VRL; 2683 BP. XX AC AF329886; XX DT 19-JUL-2001 (Rel. 68, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Maize streak virus - B[Mom], complete genome. XX KW . XX OS Maize streak virus - B[Mom] OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2683 RX DOI; 10.1006/viro.2001.1075. RX PUBMED; 11601896. RA Martin D.P., Willment J.A., Billharz R., Velders R., Odhiambo B., RA Njuguna J., James D., Rybicki E.P.; RT "Sequence diversity and virulence in Zea mays of Maize streak virus RT isolates"; RL Virology 288(2):247-255(2001). XX RN [2] RP 1-2683 RA Martin D.P., James D., Rybicki E.P.; RT ; RL Submitted (20-DEC-2000) to the INSDC. RL Microbiology, University of Cape Town, Private Bag, Cape Town, WC 7000, RL South Africa XX DR MD5; 582e7b25d7e4545cf76f54f946b65a38. XX FH Key Location/Qualifiers FH FT source 1..2683 FT /organism="Maize streak virus - B[Mom]" FT /strain="MSV-B" FT /isolate="MSV-Mom" FT /mol_type="genomic DNA" FT /country="Kenya" FT /note="isolated in 1998 from mildly infected maize" FT /db_xref="taxon:268330" FT misc_feature join(2676..2683,1..2) FT /note="conserved nonanucleotide at origin of (+) strand FT replication" FT stem_loop 20..2657 FT gene 150..455 FT /gene="V1" FT CDS 150..455 FT /codon_start=1 FT /gene="V1" FT /product="movement protein" FT /note="MP; facilitates intercellular movement of viral DNA" FT /db_xref="GOA:Q77JB6" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:Q77JB6" FT /protein_id="AAK73459.1" FT /translation="MDPQNSFLLQPRVPTAAPTSGGVSWSRVGEVAILSFVGLICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGIQAVDRSNPIPNTQAPPSQGNPGPFVPGTG" FT gene 466..1207 FT /gene="V2" FT CDS 466..1200 FT /codon_start=1 FT /gene="V2" FT /product="coat protein" FT /note="nuclear localized ss/ds DNA binding protein" FT /db_xref="GOA:Q77JB5" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:Q77JB5" FT /protein_id="AAK73460.1" FT /translation="MSTSKRKRGDDANWNKRTTKKKPSSAGLKKAGSKAERPSLQIQTL FT QHAGSTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADSQACKYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT regulatory 1203..1207 FT /gene="V2" FT /regulatory_class="polyA_signal_sequence" FT gene complement(1213..2522) FT /gene="C1/C2" FT regulatory complement(1213..1219) FT /gene="C1/C2" FT /regulatory_class="polyA_signal_sequence" FT primer_bind 1275..1345 FT /note="origin of (-) strand replication" FT CDS complement(join(1363..1788,1881..2522)) FT /codon_start=1 FT /gene="C1/C2" FT /product="Rep" FT /note="replication initiator/associated protein; required FT for initiation and termination of viral DNA replication" FT /db_xref="GOA:Q91MH0" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q91MH0" FT /protein_id="AAK73462.1" FT /translation="MASSSSNRQFSHRNVNTFLTYPHCPENPEIVCQMIWELVGRWTPK FT YIICAQEAHRDGDMHLHALLQTEKPVRITDSRFFDIEGFHPNIQSAKSVNKVRDYILKE FT PLAVFERGTFIPRKSSFQGNPSKGNSEKKPSKDEIMREIISHSTSKLEYLSMIRKEFPY FT DWATKLQYFEYSANKLFPEIQEEFISPHPPSSPDLLCNESIKDWLQPNIFQPTDEGSRK FT QSLYIVGPTRTGKSTWARSLGLHNYWQNNVDWSSYNEDAIYNIVDDIPFKYCPCWKQLV FT GCQKEFVVNPKYGKKKKVQMKSKPTIILANWDEDWMNEMTPGQLEYFEANCMIYKMSPG FT EKWYSPPMLPPTEEV" FT gene complement(1704..2522) FT /gene="C1" FT CDS complement(1704..2522) FT /codon_start=1 FT /gene="C1" FT /product="RepA" FT /note="replication initiator/associated protein ORFA; FT possibly involved in cell cycle regulation" FT /db_xref="GOA:Q91MG9" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q91MG9" FT /protein_id="AAK73461.1" FT /translation="MASSSSNRQFSHRNVNTFLTYPHCPENPEIVCQMIWELVGRWTPK FT YIICAQEAHRDGDMHLHALLQTEKPVRITDSRFFDIEGFHPNIQSAKSVNKVRDYILKE FT PLAVFERGTFIPRKSSFQGNPSKGNSEKKPSKDEIMREIISHSTSKLEYLSMIRKEFPY FT DWATKLQYFEYSANKLFPEIQEEFISPHPPSSPDLLCNESIKDWLQPNIFQVSPESYML FT LQPTCYTLEDAISDLEWMDKLSSQQMKDQESRASTSSVQQELGNLLGPEA" FT repeat_region 2590..2597 FT /note="iteron" XX SQ Sequence 2683 BP; 700 A; 619 C; 666 G; 698 T; 0 other; accgcgcctt ctttttctgc gagggccccg agggaccgag cgatttgatt taaagttcgg 60 ttctgctttg tctgatttat ctaaagcagc ccaatctaaa gaaaccggtc ccctgcgact 120 ataaattgtt tcacaagtgc gattcattta tggatccaca gaactccttt cttttacagc 180 cgcgggtacc cacagcagct ccgacatccg gaggagtgtc gtggagtcgc gtcggcgagg 240 tagctatttt gagctttgtt ggattgattt gcttttacct gctttacctt tgggtgctga 300 gagatcttat cttagttctg aaggctcgac aaggcagatc cacggaggag ctgatatttg 360 gaatacaagc tgtggatagg agcaacccta tccctaatac acaggcacca ccaagtcagg 420 ggaatcccgg gccgtttgtt ccaggcacgg gataagcaat cagccatgtc cacgtccaag 480 aggaagcggg gagatgatgc gaactggaat aagcggacga ctaagaagaa gccatcttca 540 gctggtctga agaaggctgg aagcaaggcc gaaaggccat cccttcagat ccagacactc 600 cagcatgctg ggtccaccat gataacagtc ccctccggag gagtatgtga cctcatcaac 660 acctatgccc gaggatccga cgagggcaac cgccacacca gcgagactct gacgtacaag 720 attgccgtcg actaccactt cgttgcagac tcgcaagcct gcaagtattc taacaccggg 780 accggtgtga tgtggctggt gtacgacacc actcccggcg gacaagcgcc gaccccacaa 840 acgatatttg catatccgga cacgctgaaa gcttggccgg caacatggaa agtgagccgg 900 gagctgtgtc atcgcttcgt ggtgaaacgg cgatggttgt tcaacatgga gaccgacggt 960 cgaattggtt cggacatccc tccttcgaat gcaagttgga agccgtgcaa gcgcaacatc 1020 tacttccaca agttcacgag tgggttggga gtgagaacgc agtggaagaa tgtaacggac 1080 ggaggagttg gtgcgataca gagaggagct ctgtacatgg tcattgcccc tggcaatggc 1140 cttacattta ctgcccatgg gcagacccgt ctgtacttta agagtgtcgg caaccagtaa 1200 tgaataaaaa ctccgtttta ttatatctga tgaatgctga aagcttacat taatatgtcg 1260 tgcgatggca cgaaaaacac actggaacgc agccccgggc taaagaccgg gtctcaagag 1320 accctgcgat acaaaacatc gaaaaaacaa gatctatatg aattacactt cctccgtagg 1380 aggaagcata gggggagaat accacttctc ccccggcgac attttataaa tcatgcagtt 1440 ggcctcgaaa tactccagct gccctggagt catttcattc atccagtctt catcccagtt 1500 ggcgaggatg attgtaggct tggacttcat ctgaactttc tttttcttgc catattttgg 1560 atttacaacg aactctttct gacagccaac taactgtttc caacaaggac agtatttaaa 1620 aggaatatca tctacgatgt tgtagattgc gtcttcgttg taagaagacc aatcaacatt 1680 attttgccaa taattatgaa gccctaagct tctggcccaa gtagatttcc cagttcttgt 1740 tggaccgacg atgtagaggc tctgctttct tgatccttca tctgttggct ggataattta 1800 tccatccatt caaggtcaga gatagcatct tcgagggtgt aacaggtagg ttgaagaagc 1860 atatatgatt cgggactaac ctgaaagatg ttaggctgga gccaatcttt gattgactca 1920 ttacaaagaa gatcaggtga agagggtgga tgaggactga tgaattcttc ctgaatctca 1980 gggaacaatt tatttgcaga gtattcaaaa tactgcaatt ttgtggccca gtcatagggg 2040 aactctttac gaatcataga gaggtactct agctttgaag tggagtgtga aataatctct 2100 ctcattattt catctttgga aggtttcttt tcagaatttc ccttggaagg atttccttgg 2160 aagcttgact tcctaggaat gaaagtacct ctctcaaaca cagccagggg ttccttgaga 2220 atgtaatccc tgaccttgtt tactgatttt gcactctgaa tgtttgggtg gaacccttcg 2280 atatcaaaga accttgagtc agtgattctt accggtttct ctgtctggag taatgcatgt 2340 aaatgcatat ctccgtctct atgtgcctct tgggcacata tgatatactt cggggtccaa 2400 cgaccaacga gctcccaaat catctgacag acgatttctg gattttctgg acagtgtgga 2460 tatgttaaga acgtgttaac gttcctgtgt gagaactgac ggttggatga ggaggaggcc 2520 atatcggacg actctgagca gcttgcggga tggcaggatg ggagctccaa actctatatc 2580 aaccggtttg cgccttcgaa atccgccgct ccccctttta tagtggttgt ttatgggccg 2640 gaccgggccg gcccagcagg aaaagaaggc gcgcaataat att 2683 //