ID AF329885; SV 1; circular; genomic DNA; STD; VRL; 2687 BP. XX AC AF329885; XX DT 19-JUL-2001 (Rel. 68, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Maize streak virus - A[KA], complete genome. XX KW . XX OS Maize streak virus - A[KA] OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2687 RX DOI; 10.1006/viro.2001.1075. RX PUBMED; 11601896. RA Martin D.P., Willment J.A., Billharz R., Velders R., Odhiambo B., RA Njuguna J., James D., Rybicki E.P.; RT "Sequence diversity and virulence in Zea mays of Maize streak virus RT isolates"; RL Virology 288(2):247-255(2001). XX RN [2] RP 1-2687 RA Martin D.P., James D., Rybicki E.P.; RT ; RL Submitted (20-DEC-2000) to the INSDC. RL Microbiology, University of Cape Town, Private Bag, Cape Town, WC 7000, RL South Africa XX DR MD5; 4e865db7848c8a094f332d994c49ce2d. DR EuropePMC; PMC1262190; 16244707. XX FH Key Location/Qualifiers FH FT source 1..2687 FT /organism="Maize streak virus - A[KA]" FT /strain="MSV-A" FT /isolate="MSV-MtKA" FT /mol_type="genomic DNA" FT /country="Kenya" FT /note="isolated in 1997 from severely infected maize FT subtype: MSV-A3" FT /db_xref="taxon:268318" FT misc_feature join(2680..2687,1..2) FT /note="conserved nonanucleotide at origin of (+) strand FT replication" FT stem_loop 20..2660 FT gene 150..455 FT /gene="V1" FT CDS 150..455 FT /codon_start=1 FT /gene="V1" FT /product="movement protein" FT /note="MP; facilitates intercellular movement of viral DNA" FT /db_xref="GOA:Q91MH4" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:Q91MH4" FT /protein_id="AAK73455.1" FT /translation="MDPQNALYYQPRVPTAAPTSGGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNIPAPPSQGNPGPFVPGTG" FT gene 466..1207 FT /gene="V2" FT CDS 466..1200 FT /codon_start=1 FT /gene="V2" FT /product="coat protein" FT /note="nuclear localized ss/ds DNA binding protein" FT /db_xref="GOA:Q91MH3" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:Q91MH3" FT /protein_id="AAK73456.1" FT /translation="MSTSKRKRGDDANWSKRVSKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT regulatory 1203..1207 FT /gene="V2" FT /regulatory_class="polyA_signal_sequence" FT gene complement(1213..2525) FT /gene="C1/C2" FT regulatory complement(1213..1219) FT /gene="C1/C2" FT /regulatory_class="polyA_signal_sequence" FT primer_bind 1275..1350 FT /note="origin of (-) strand replication" FT CDS complement(join(1351..1791,1884..2525)) FT /codon_start=1 FT /gene="C1/C2" FT /product="Rep" FT /note="replication initiator/associated protein; required FT for initiation and termination of viral DNA replication" FT /db_xref="GOA:Q91MH2" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q91MH2" FT /protein_id="AAK73458.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKELPF FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSQPDLLCNESINDWLQPNIFQSSDERSRK FT QSLYIVGPTRTGKSTWARSLGVHNYWQNNVDWSSYNEDAIYNIVDDIPFKFCPCWKQLV FT GCQRDFIVNPKYGKKKKVQKKSKPTIILANSDEDWMKEMNPGQLDYFEANCIIYIMSPG FT EKWYSPPELPPTEAVHSDRS" FT gene complement(1707..2525) FT /gene="C1" FT CDS complement(1707..2525) FT /codon_start=1 FT /gene="C1" FT /product="RepA" FT /note="replication initiator/associated protein ORFA; FT possibly involved in cell cycle regulation" FT /db_xref="GOA:Q91MH1" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q91MH1" FT /protein_id="AAK73457.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKELPF FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSQPDLLCNESINDWLQPNIFQVSPEAYML FT LQPNCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQEPENLLGPEA" FT repeat_region 2594..2601 FT /note="iteron" FT regulatory 2639..2658 FT /regulatory_class="GC_signal" XX SQ Sequence 2687 BP; 689 A; 632 C; 691 G; 675 T; 0 other; accgcgcctt cttttcctgc gagggcccgg tagggcccga gcgatttgat gtaaagcttg 60 gtcctgcttt gtatgattta tctaaagcag cccaatctaa agaaaccggt cccgggcact 120 ataaattgcc taacaagtgc gattcattca tggatccaca gaacgccctg tattatcagc 180 cgcgggtacc cacagcagct ccgacatccg gaggagtgcc gtggagtcgc gtaggcgagg 240 tagctatttt gagctttgtt gcattgattt gcttttacct gctttacctt tgggtgctga 300 gagaccttat cttagttctg aaggctcgac aaggcagatc cacggaggag ctgatatttg 360 gaggacaagc tgtggatagg agcaacccta tccctaatat accagcacca ccaagtcagg 420 gcaatcccgg gccatttgtt ccaggcacgg gataagcaat cagccatgtc cacgtccaag 480 aggaagcggg gagatgatgc gaattggagt aagcgggtgt ctaagaagaa gccttcttca 540 gctgggctga agagggctgg aagcaaggcc gataggccat ccctccaaat ccagacactc 600 cagcatgctg ggaccaccat gataacggtc ccctccggag gagtatgtga cctcatcaac 660 acctatgccc gaggatctga cgagggcaac cgccacacca gcgagactct gacgtacaag 720 attgccgtcg actaccactt cgttgccgac gcggcagcct gccgctactc caacaccgga 780 accggtgtaa tgtggctggt gtatgacacc actcccggcg gacaagctcc gaccccgcaa 840 actatatttg cctaccctga cacgctaaaa gcgtggccgg ccacatggaa agtgagccgg 900 gagctgtgtc atcgcttcgt ggtgaaacgg cgatggttgt tcaacatgga gaccgacggt 960 cggattggtt cggatattcc tccatcgaat gcaagttgga agccttgcaa gcgcaacatc 1020 tacttccaca agttcacgag cgggttggga gtgagaacgc agtggaagaa tgtaacggac 1080 ggaggagttg gtgccatcca gagaggagcc ctgtacatgg tcattgcccc cggcaatggt 1140 cttactttta ctgcccatgg gcagacccgt ctgtacttta agagtgttgg caaccagtaa 1200 tgaataaaac gccgttttta ttatagctga tgaatgctga aagcttacat taatatgtcg 1260 tgcgatggca cgaaaaacac acgcaatcaa tacagggggg tagtcggcgg gcggctaagg 1320 gtggtgctcg gcgggcaaaa catcgaaaaa tcaagatcta tctgaatgta ctgcctccgt 1380 aggaggcagc tcagggggag aataccactt ctcccccggc gacataatgt aaatgatgca 1440 gtttgcctcg aaataatcca gctgccctgg attcatttcc ttcatccaat cttcatccga 1500 gttggcgagg attattgtag gcttagactt cttctgcacc ttcttcttct taccatattt 1560 ggggtttaca atgaaatccc tctgacagcc aactaactgt ttccaacaag gacagaattt 1620 aaacggaata tcatctacga tgttgtagat tgcgtcttcg ttgtatgaag accaatcaac 1680 attattttgc cagtaattat gaacccctag gcttctggcc caagtagatt ttccggttct 1740 tgttgggccg acgatgtaga ggctctgctt tcttgatctt tcatctgatg actggataca 1800 gaatccatcc attggaggtc agagattgca tcctcgagtg tataacagtt aggttgaagg 1860 agcatgtaag cttcgggact aacctgaaag atgttaggct ggagccaatc attgattgac 1920 tcattacaga gcaaatcagg ttgggagggt ggatgaggat tggtgaactc ttcctgaatc 1980 tcaggaaaaa gcttatttgc agagtattca aaatactgca attttgtgga ccaatcaaag 2040 ggaagctctt tctggatcat ggagaggtac tcttccttgg aagtagagtg tgaaataatg 2100 tctcgcatta tttcatcttt ggaaggcttt ttttccttta cttctgaatc agattttcct 2160 aggaaggggg acttcctagg aatgaaagta cctctctcaa acacagccag aggttccttg 2220 agaatgtaat ccctcaccct gttaactgac ttggcactct gaatatttgg gtgaaaccca 2280 tttatatcaa agaaccttga gtcagatatc cttaccggct tctctgtctg aagcaatgca 2340 tgtaaatgca aacttccatc tttatgtgcc tctcgggcac atagaatata tttgggaatc 2400 caacgaacaa cgagctccca gatcatctga caggcgattt caggattttc tggacacttt 2460 gggtacgtta ggaacgtgtt agcgttcctg tgtgagaact gacggttgga tgaggaggag 2520 gccatagccg acgacggagg ctgaggctga gggatggcag aatgggagct ccaaactcta 2580 tagtatacct gtgcgccttc gaaatccgcc gctcccttgt cttatagtgg ttgtaaatgg 2640 gccggaccgg gccggcccag caggaaaaga aggcgcgcac taatatt 2687 //