ID AF329884; SV 1; circular; genomic DNA; STD; VRL; 2687 BP. XX AC AF329884; XX DT 19-JUL-2001 (Rel. 68, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Maize streak virus - A[MakD], complete genome. XX KW . XX OS Maize streak virus - A[MakD] OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2687 RX DOI; 10.1006/viro.2001.1075. RX PUBMED; 11601896. RA Martin D.P., Willment J.A., Billharz R., Velders R., Odhiambo B., RA Njuguna J., James D., Rybicki E.P.; RT "Sequence diversity and virulence in Zea mays of Maize streak virus RT isolates"; RL Virology 288(2):247-255(2001). XX RN [2] RP 1-2687 RA Martin D.P., James D., Rybicki E.P.; RT ; RL Submitted (20-DEC-2000) to the INSDC. RL Microbiology, University of Cape Town, Private Bag, Cape Town, WC 7000, RL South Africa XX DR MD5; 490f7c0873e5fadc21c42f72b5f8e981. DR EuropePMC; PMC1262190; 16244707. XX FH Key Location/Qualifiers FH FT source 1..2687 FT /organism="Maize streak virus - A[MakD]" FT /strain="MSV-A" FT /isolate="MSV-MakD" FT /mol_type="genomic DNA" FT /country="South Africa" FT /note="isolated in 1999 from severely infected maize FT subtype: MSV-A5" FT /db_xref="taxon:268322" FT misc_feature join(2680..2687,1..2) FT /note="conserved nonanucleotide at origin of (+) strand FT replication" FT stem_loop 20..2660 FT gene 150..455 FT /gene="V1" FT CDS 150..455 FT /codon_start=1 FT /gene="V1" FT /product="movement protein" FT /note="MP; facilitates intercellular movement of viral DNA" FT /db_xref="GOA:Q910J2" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:Q910J2" FT /protein_id="AAK73451.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT gene 466..1207 FT /gene="V2" FT CDS 466..1200 FT /codon_start=1 FT /gene="V2" FT /product="coat protein" FT /note="nuclear localized ss/ds DNA binding protein" FT /db_xref="GOA:Q91MH7" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:Q91MH7" FT /protein_id="AAK73452.1" FT /translation="MSTSKRKRGDDANWSKRVTKKKPSSAGLKRAGSKADRQSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT regulatory 1203..1207 FT /gene="V2" FT /regulatory_class="polyA_signal_sequence" FT gene complement(1213..2527) FT /gene="C1/C2" FT regulatory complement(1213..1219) FT /gene="C1/C2" FT /regulatory_class="polyA_signal_sequence" FT primer_bind 1277..1352 FT /note="origin of (-) strand replication" FT CDS complement(join(1353..1793,1886..2527)) FT /codon_start=1 FT /gene="C1/C2" FT /product="Rep" FT /note="replication initiator/associated protein; required FT for initiation and termination of viral DNA replication" FT /db_xref="GOA:Q91MH6" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q91MH6" FT /protein_id="AAK73454.1" FT /translation="MASSSSNRQFSHRNVNTFLTYPKCPENPEIACQMIWELVVRWIPK FT YIVCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKEFPY FT DWVTKLQYFEYSANKLFPEIQEEFTNPHPQSTPDLLCSESINDWLQPNIFQSSDERSRK FT QSLYIVGPTRTGKSTWARSLGVHNYWQNNVDWSSYNEDAIYNIVDDIPFKFCPCWKQLV FT GCQRDFIVNPKYGKKKKVQKKSKPTIILANSDEDWMKEMTPGQLEYFEANCVIWIMSPG FT EKWYSPPELPPTEAVHSDRS" FT gene complement(1709..2527) FT /gene="C1" FT CDS complement(1709..2527) FT /codon_start=1 FT /gene="C1" FT /product="RepA" FT /note="replication initiator/associated protein ORFA; FT possibly involved in cell cycle regulation" FT /db_xref="GOA:Q91MH5" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q91MH5" FT /protein_id="AAK73453.1" FT /translation="MASSSSNRQFSHRNVNTFLTYPKCPENPEIACQMIWELVVRWIPK FT YIVCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKEFPY FT DWVTKLQYFEYSANKLFPEIQEEFTNPHPQSTPDLLCSESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQEQENLLGPEA" FT repeat_region 2594..2601 FT /note="iteron" FT regulatory 2639..2658 FT /regulatory_class="GC_signal" XX SQ Sequence 2687 BP; 686 A; 647 C; 688 G; 666 T; 0 other; accgcgcctt cttttcctgc gagggcccgg tagggcccga gcgatttgat gtaaagcttg 60 gtcctgcttt gtatgattta tctaaagcag cccattctaa agaaaccggt cccgggcact 120 ataaattgcc taacaagtgc gattcattca tggatccaca gaacgccctg tactatcagc 180 cgcgggtacc cacagcagct ccggcatccg caggagtgcc gtggagtcgc gtaggcgagg 240 tagctatttt gagctttgtt gcactgattt gcttttacct gctttacctt tgggtgctga 300 gagaccttat cttagttctg aaggctcgac aaggcagatc cacggaggag ctgatatttg 360 gaggacaagc tgtggatagg agcaacccta tccctaatct accagcacca ccaagtcagg 420 gcaatcccgg gccatttgtt ccaggcacgg gataagcatt cagccatgtc cacgtccaag 480 aggaagcggg gggatgacgc gaattggagt aagcgggtga ctaagaagaa gccttcttca 540 gctgggctga agagggctgg aagcaaggcc gataggcaat ccctccaaat ccagacactc 600 cagcatgctg ggaccaccat gataacggtc ccctctggag gggtatgtga cctcatcaac 660 acctacgccc gaggatcgga cgagggcaac cgccacacca gcgagactct cacgtacaag 720 atcgccatcg actaccactt cgttgccgac gcggcagcct gccgctactc caacaccgga 780 accggtgtaa tgtggctggt gtatgacacc actcccggcg gacaagctcc gaccccgcaa 840 actatatttg cctaccctga cacgctaaaa gcgtggccgg ccacatggaa ggtgagccgg 900 gagctgtgtc atcgcttcgt ggtgaaacgg cgatggttgt tcaacatgga gaccgacggg 960 cggattggtt cggacattcc tccttcgaat gcaagttgga agccttgcaa gcgcaacatc 1020 tacttccaca agttcacgag cgggttggga gtgagaacgc agtggaagaa tgtaacggac 1080 ggaggagttg gtgccatcca gagaggagcg ttgtacatgg tcattgcccc cggcaatggt 1140 cttacattta ctgcccatgg gcagacccgt ctgtacttta agagtgttgg caaccagtaa 1200 tgaataaaaa ctcccgtttt attatactgc atgaatgctg aaagcttaca ttaatatgtc 1260 gtgcgatggc acgaaaaaac acacacaatc aatacagggg ggtagtaggc gggcggctaa 1320 gggtggtgct cggcgggcag aacatcgaaa aatcaagatc tatctgaatg tactgcctcc 1380 gtaggaggca gctcaggggg agaataccac ttctcccccg gcgacataat ccaaatgacg 1440 caatttgcct cgaaatactc cagctgccct ggagtcattt ccttcatcca atcttcatcc 1500 gagttggcga ggattattgt aggcttagac ttcttctgca ccttcttctt cttaccatac 1560 ttggggttta caatgaaatc cctctgacag ccaactaact gtttccaaca aggacagaat 1620 ttaaaaggga tatcatctac gatgttgtag attgcgtctt cattgtatga agaccaatca 1680 acattatttt gccagtaatt atgaacccct aggcttctgg cccaagtaga ttttcctgtt 1740 cttgttgggc cgacgatgta gaggctctgc tttcttgatc tttcatctga tgactggata 1800 cagaatccat ccattggagg tcagaaattg catcctcgag ggtataacag gtaggttgaa 1860 ggagcatgta cgcttcggga ctaacctgga agatgttagg ctggagccaa tcattgattg 1920 actcactaca aagtaaatca ggtgtggatt gcggatgagg attggtgaac tcttcctgaa 1980 tctcaggaaa aagcttattt gcagagtatt caaaatactg caattttgtg acccaatcat 2040 agggaaactc tttctggatc atggagaggt actcttcctt ggaagtagag tgtgaaataa 2100 tgtctcgcat tatttcatct ttggaaggct ttttttcctt aacttctgaa tcagattttc 2160 ctaggaaggg ggacttccta ggaatgaaag tacctctctc aaacatagcc agaggttcct 2220 tgagaatgta atccctcacc ctgtttactg acttggcact ctgaatgttt gggtgaaacc 2280 cattaatatc aaagaacctt gagtccgata ttcttaccgg cttctctgtt tgaagcaatg 2340 catgtaaatg caaacttcca tctttgtgtg cctctcgggc acagacaata tacttgggta 2400 tccaacgaac aacgagctcc cagatcatct gacaggcgat ttcaggattt tctggacact 2460 ttggataggt taagaacgtg ttcacgttcc tgtgtgagaa ctgacggttg gatgaggagg 2520 aggccatatc cgacgacgga ggatgaggct gagggatggc agatggggag ctctcaactc 2580 tataccaacc ggtgcgcctt cgaaatccgc cgcccctctt cttatagtgg ttgtgaatgg 2640 gccggaccgg gccggcccag caggaaaaga aggcgcgcac taatatt 2687 //