ID AF329882; SV 1; circular; genomic DNA; STD; VRL; 2689 BP. XX AC AF329882; XX DT 19-JUL-2001 (Rel. 68, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Maize streak virus - A[MatB], complete genome. XX KW . XX OS Maize streak virus - A[MatB] OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2689 RX DOI; 10.1006/viro.2001.1075. RX PUBMED; 11601896. RA Martin D.P., Willment J.A., Billharz R., Velders R., Odhiambo B., RA Njuguna J., James D., Rybicki E.P.; RT "Sequence diversity and virulence in Zea mays of Maize streak virus RT isolates"; RL Virology 288(2):247-255(2001). XX RN [2] RP 1-2689 RA Martin D.P., James D., Rybicki E.P.; RT ; RL Submitted (20-DEC-2000) to the INSDC. RL Microbiology, University of Cape Town, Private Bag, Cape Town, WC 7000, RL South Africa XX DR MD5; faef3eff9d878f04e1eea0f19718300e. XX FH Key Location/Qualifiers FH FT source 1..2689 FT /organism="Maize streak virus - A[MatB]" FT /strain="MSV-A" FT /isolate="MSV-MatB" FT /mol_type="genomic DNA" FT /country="Zimbabwe" FT /note="isolated in 1994 from severely infected maize FT subtype: MSV-A1" FT /db_xref="taxon:268324" FT misc_feature join(2682..2689,1..2) FT /note="conserved nonanucleotide at origin of (+) strand FT replication" FT stem_loop 20..2662 FT gene 150..455 FT /gene="V1" FT CDS 150..455 FT /codon_start=1 FT /gene="V1" FT /product="movement protein" FT /note="MP; facilitates intercellular movement of viral DNA" FT /db_xref="GOA:Q77JB8" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:Q77JB8" FT /protein_id="AAK73443.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT gene 466..1207 FT /gene="V2" FT CDS 466..1200 FT /codon_start=1 FT /gene="V2" FT /product="coat protein" FT /note="nuclear localized ss/ds DNA binding protein" FT /db_xref="GOA:Q91MI3" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:Q91MI3" FT /protein_id="AAK73444.1" FT /translation="MSTSKRKRGDDSSWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT regulatory 1203..1207 FT /gene="V2" FT /regulatory_class="polyA_signal_sequence" FT gene complement(1213..2527) FT /gene="C1/C2" FT regulatory complement(1213..1219) FT /gene="C1/C2" FT /regulatory_class="polyA_signal_sequence" FT primer_bind 1277..1352 FT /note="origin of (-) strand replication" FT CDS complement(join(1353..1793,1886..2527)) FT /codon_start=1 FT /gene="C1/C2" FT /product="Rep" FT /note="replication initiator/associated protein; required FT for initiation and termination of viral DNA replication" FT /db_xref="GOA:Q91MI2" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q91MI2" FT /protein_id="AAK73446.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKELPY FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPQSSPDLLCNESINDWLQPNIFQSSDERSRK FT QSLYIVGPTRTGKSTWARSLGVHNYWQNNVDWSSYNEDAIYNIVDDIPFKFCPCWKQLV FT GCQRDFIVNPKYGKKKKVQKKSKPTIILANSDEDWMKEMTPGQLEYFEANCVIYIMSPG FT EKWYSPPELPPTEAVHSDRS" FT gene complement(1709..2527) FT /gene="C1" FT CDS complement(1709..2527) FT /codon_start=1 FT /gene="C1" FT /product="RepA" FT /note="replication initiator/associated protein ORFA; FT possibly involved in cell cycle regulation" FT /db_xref="GOA:Q91MI1" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q91MI1" FT /protein_id="AAK73445.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKELPY FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPQSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDNVSSHQMKDQESRASTSSAQQEQENLLGPEA" FT repeat_region 2595..2602 FT /note="iteron" XX SQ Sequence 2689 BP; 681 A; 637 C; 694 G; 677 T; 0 other; accgcgcctt cttttcctgc gagggcccgg tagggcccga gcgatttgat gtaaagcttg 60 gtcctgcttt gtatgattta tctaaagcag cccattctaa agaaaccggt cccgggcact 120 ataaattgcc taacaagtgc gattcattca tggatccaca gaacgccctg tattatcagc 180 cgcgggtacc cacagcagct ccggcatccg caggagtgcc gtggagtcgc gtaggcgagg 240 tagctatttt gagctttgtt gcactgattt gcttttacct gctttacctt tgggtgctga 300 gagaccttat cttagttctg aaggctcgac aaggcagatc cacggaggag ctgatatttg 360 gaggacaagc tgtggatagg agcaacccta tccctaatct accagcacca ccaagtcagg 420 gcaatcccgg gccatttgtt ccaggcacgg gataagcatt cagccatgtc cacgtccaag 480 aggaagcggg gagatgattc gagttggagt aagcgggtta ctaagaagaa gccctcttca 540 gctggtctga agagggctgg cagcaaggcc gataggccat ccctccaaat ccagacactc 600 cagcatgctg ggaccaccat gataacggtc ccatccggag gagtatgtga cctcatcaac 660 acctatgccc gaggatctga cgagggcaac cgccacacca gcgagactct cacgtacaag 720 atcgccatcg actaccactt cgttgccgac gcggcagcct gccgctactc caacaccgga 780 accggtgtaa tgtggctggt gtatgacacc actcccggcg gacaagctcc gaccccgcaa 840 actatatttg cctaccctga cacgctaaaa gcgtggccgg ccacatggaa ggtgagccgg 900 gagctgtgtc atcgcttcgt ggtgaaacgg cgatggttgt tcaacatgga gaccgacggg 960 cggattggtt cggacattcc tccctcgaat gcaagttgga agccttgcaa gcgcaacatc 1020 tacttccaca agttcacgag cgggttggga gtgagaacgc agtggaagaa tgtaacggac 1080 ggaggagttg gtgccatcca gagaggagcg ttgtacatgg tcattgcccc cggcaatggt 1140 cttacattta ctgcccatgg gcagacccgt ctgtacttta agagtgttgg caaccagtaa 1200 tgaataaaaa ctcccgtttt attatatctg atgaatgctg aaagcttaca ttaatatgtc 1260 gtgcgatggc acgaaaaaac acacgcaatc aatacagggg ggtagtaggc gggcggctaa 1320 gggtggtgct cggcgggcag aacatcgaaa aatcaagatc tatctgaatg tactgcctcc 1380 gtaggaggca gctcaggggg agaataccat ttctcccccg gcgacataat gtaaatgacg 1440 cagtttgcct cgaaatactc cagctgccct ggagtcattt ccttcatcca atcttcatcc 1500 gagttggcga ggattattgt aggcttagac ttcttctgca ccttcttctt cttaccatac 1560 ttggggttta caatgaaatc cctctgacag ccaactaact gtttccaaca aggacagaat 1620 ttaaacggga tatcatctac gatgttgtag attgcgtctt cgttgtatga agaccaatca 1680 acattatttt gccagtaatt atgaacccct aggcttctgg cccaagtaga ttttcctgtt 1740 cttgttgggc cgacgatgta gaggctctgc tttcttgatc tttcatctga tgactggata 1800 cattatccat ccattggagg tcagaaattg catcctcgag ggtataacag gtaggttgaa 1860 ggagcatgta agcttcggga ctaacctgga agatgttagg ctggagccaa tcattgattg 1920 actcattaca aagtaaatca ggtgaggatt gcggatgagg attggtgaac tcttcctgaa 1980 tctcaggaaa aagcttattt gcagagtatt caaaatactg caattttgtg gaccaatcat 2040 agggaagctc tttctggatc atggagaggt actcttcctt ggaagtagag tgtgaaataa 2100 tgtctcgcat tatttcatct ttggaaggct ttttttcctt aacttctgaa tcagattttc 2160 ctaggaaggg ggacttccta ggaatgaaag tacctctctc aaacatagcc agaggttcct 2220 tgaggatgta atccctcacc ctgtttactg acttggcact ctgaatgttt gggtgaaacc 2280 cattaatatc aaagaacctt gagtccgata ttcttaccgg cttctctgtt tgaagcaatg 2340 catgtaaatg caaacttcca tctttatgtg cctctcgggc acatagaatg tacttgggaa 2400 tccaacgaac aacgagctcc cagatcatct gacaggcgat ttcaggattt tctggacact 2460 ttggataggt gaggaacgtg ttagcgttcc ggtgtgagaa ctgacggttg gatgaggagg 2520 aggccatagc cgacgacgga ggttgaggct gagggatggc agactgggag ctccaaactc 2580 tatagtatac ctgtgcgcct tcgaaatccg ccgctccctt gtcttatagt ggttgtgaat 2640 gggccggacc gggtcggccc agcaggaaaa gaaggcgcgc actaatatt 2689 //