ID AF329080; SV 1; linear; genomic RNA; STD; VRL; 3096 BP. XX AC AF329080; XX DT 09-MAR-2001 (Rel. 67, Created) DT 29-MAY-2003 (Rel. 75, Last updated, Version 2) XX DE Boolarra virus segment RNA1 protein A and B2 genes, complete cds. XX KW . XX OS Boolarra virus OC Viruses; Riboviria; Nodaviridae; Alphanodavirus. XX RN [1] RP 1-3096 RA Dasgupta R., Ye B., Harper T.A.; RT ; RL Submitted (13-DEC-2000) to the INSDC. RL Animal Health and Biomedical Sciences, University of Wisconsin, 1656 Linden RL Drive, Madison, WI 53706, USA XX DR MD5; 95e156ed1c025c61155ea7b6fc303378. XX FH Key Location/Qualifiers FH FT source 1..3096 FT /organism="Boolarra virus" FT /segment="RNA1" FT /host="Oncopera intricoides" FT /mol_type="genomic RNA" FT /country="Australia" FT /note="nodavirus of insect origin" FT /db_xref="taxon:12286" FT CDS 27..3023 FT /codon_start=1 FT /product="protein A" FT /note="RNA polymerase" FT /db_xref="GOA:Q992J0" FT /db_xref="InterPro:IPR020237" FT /db_xref="UniProtKB/Swiss-Prot:Q992J0" FT /protein_id="AAK15751.1" FT /translation="MTIKIILGEHQITRTELLGGIVIVSGCGAVAYCISKFWGYGAIAP FT YPQSGGNRVTRALQRAVIDKTKTPIKTHFYPLDSLRTVTPRRASDNGHAVSGAVRDAAR FT RLINESIETVGGSKFELNPNPNSTMGPRNHFHFAVGDLAQNFRDDQPAADAFIVGVDVD FT YYITEPDVLLEHMRPLVLHTFNPKKVSGFDADSPFTINNNLVEYKVSGGAAWVHPVWDW FT CEAGEFIASRVRSSWFEWLLQLPLRCLGLERVGYHKIHHCRPWTDCPDRALVYTIPQHT FT VWRFTWIDTEIHTRKLKRITYQDNTKPGWNRLEHVSDNNQLLVSIGREGEHMQITIEKD FT KLEMLSGLGATQSVNARLIGMGHKDPLYTSMIVQYYTGKKVVLSVAPTVYRPTMPRVHW FT PVTSDADVPEVSARQYTKPIISDCMMMPMIKRWETMSESIERRVTFVANNKKPSDAVAK FT IAAEFVSLMNGPFIDLEPLTIEETVERLNKPSQQLQLRAVFEIMGVEPRQVIESFNKNE FT PGMKSSRIISAFPDILFIVKVSRYTLAYSDAVLHAEHNQHWYYPGRTPVGITDGVCEFV FT SDCDGQVIETDFSNLDGRVSGWMQRNIAQKAMVQAFRAEYRDEIISFMDTIINCPAKAK FT RFGFRYEPGMGVKSGSPTTTPHNTQYNACVEYTALKFEYPDANPEDLFSLLGPKCGDDG FT LARATIQKTINRAAKCYGLELKVEKYNPEVGLCFLSRVFVDPLNTPTTIQDPLRTLRKL FT HITTRDPTIPIADAACDRVEGYLCTDAHTPLISEYCRMVQRLYGPKTSTRDVREARRSR FT NKEKPYWLTCDGSWPQHPQDALLMKQIVVSRTGIDEDTVDKLIGRFAAMKDVWEPITLE FT SEESKAAQTIDEEGVAPGSVDESLLKLNDAKQTRSNSGTSGPHTKGGGSGTGNELPRST FT KQRAKGPRQSAGLPKQGKANSKPNGNVAAGQAQHGGIPRGKTPSGGKTNARRAPPKAGA FT QPGAPTNPK" FT misc_feature 2709..3096 FT /note="subgenomic RNA3 at the 3' end of RNA1" FT CDS 2725..3045 FT /codon_start=1 FT /product="B2" FT /db_xref="GOA:Q992I9" FT /db_xref="InterPro:IPR024377" FT /db_xref="InterPro:IPR037209" FT /db_xref="UniProtKB/Swiss-Prot:Q992I9" FT /protein_id="AAK15752.1" FT /translation="MQSKLALIQELPDRIQKAVEVVLAMSYQEAPNNVRRDLDNLQACL FT NKAKQTVNRMVTSLLDKPSMAAYLEGKPLPEERPTLEERLRKLELSREPPPTRSDPAPA FT KL" XX SQ Sequence 3096 BP; 884 A; 764 C; 766 G; 682 T; 0 other; gtttttcaac aaaagcaaac tttacaatga ctattaaaat cattcttgga gaacaccaga 60 tcacccgcac ggaattgctc ggcgggattg tgattgtatc tggatgcggt gctgtagcgt 120 actgcatatc caagttttgg ggctatgggg caattgcgcc ctacccccaa agtggaggga 180 accgagttac acgcgcattg caacgggctg tcatcgacaa aacgaaaacc ccgataaaaa 240 cgcattttta tccgcttgac agcctgcgta ccgtaacgcc gagacgtgcc tcagataatg 300 ggcacgcagt ttcaggagcc gtccgtgacg cagctcgtag attaatcaac gagtcgatcg 360 agacggttgg ggggtccaaa tttgaactca acccgaaccc caattcaacg atggggccta 420 gaaaccattt ccacttcgcc gtcggtgatt tggcacagaa tttccgcgat gaccaacccg 480 cggctgatgc cttcatcgtc ggtgttgatg tggactacta tatcacagaa ccagacgtcc 540 tattagaaca tatgagacct cttgtactac ataccttcaa tcctaagaag gttagtggct 600 ttgacgcaga ttcacctttt accatcaata acaacttggt ggaatacaag gtgagtggcg 660 gagccgcttg ggtacacccg gtctgggact ggtgtgaagc tggcgagttc atcgctagcc 720 gtgtgagaag tagttggttt gaatggctat tacaattacc attgaggtgt ttgggtttag 780 agagggtcgg ctaccataaa attcatcatt gccgaccgtg gaccgattgt ccagaccggg 840 ctctggttta caccatccca cagcacactg tctggagatt cacgtggatt gacactgaga 900 tccacacccg caaactgaaa cgcattacat accaggataa cactaaacct ggttggaaca 960 gactagaaca tgtgtccgac aataaccaat tgttggtcag cattggccga gagggggagc 1020 atatgcagat taccatagag aaggataaac tggaaatgct ctccgggctc ggggcaactc 1080 agtctgtaaa tgcacggctt attggtatgg gacataagga cccgctatac acttccatga 1140 tagtacagta ttatactgga aagaaggttg tgcttagcgt tgctcccact gtttatcgcc 1200 ctacaatgcc acgcgtccat tggccagtca ccagtgacgc agatgtgccc gaagtgagtg 1260 cacgacagta caccaagcct ataatcagcg actgcatgat gatgccgatg attaagcgtt 1320 gggagaccat gtcagagtcg atcgaaagga gagttacatt cgtcgctaat aataagaaac 1380 caagcgacgc ggtcgcgaag atcgcagcgg aatttgtgtc gctgatgaat ggaccgttca 1440 tagacctcga accattaact attgaggaaa cagttgaacg tcttaacaaa ccatcacagc 1500 aattacaatt acgcgcggtt ttcgagatca tgggtgtaga acctcgacaa gtgatcgaat 1560 cgtttaataa gaacgagcct ggaatgaaat cgagccggat catttcagct tttcctgaca 1620 tactttttat agtgaaagtt tcccgctata cactagcgta ttccgacgca gtgttacacg 1680 ccgaacataa ccaacattgg tattatccag gccgtacccc agtggggata accgacgggg 1740 tttgtgaatt cgtgagtgat tgtgacggac aagtcataga aaccgatttc tctaatctcg 1800 acggcagagt ctccgggtgg atgcaacgaa acatagccca gaaagctatg gttcaagcat 1860 ttcgcgctga ataccgtgac gaaataatat cattcatgga caccattatc aactgtccag 1920 ccaaggctaa acgctttggg tttcgttacg agccaggcat gggtgtcaag agtggaagtc 1980 caactaccac accacataat acacagtaca atgcatgcgt cgaatataca gcgctcaaat 2040 ttgagtatcc cgacgccaac cctgaggacc tgttcagttt acttggaccg aagtgcggtg 2100 atgatggact cgcaagagcc accatacaga aaaccatcaa ccgcgcggcc aagtgttacg 2160 gactggaact caaagtagag aagtacaacc cagaagtggg tttgtgcttt ttgtcccgtg 2220 tatttgtaga cccactcaac actcctacta cgattcaaga tccgttacgc acactgcgaa 2280 aactgcatat aacaacacgt gaccccacaa tccctatagc tgacgcggct tgcgaccgcg 2340 tcgaaggcta cctctgcact gatgcccaca caccgcttat tagcgagtat tgtaggatgg 2400 tgcaacgact atacgggccc aaaacttcaa ctagagatgt tcgggaagcc cgtcgtagtc 2460 gtaataaaga gaagccctat tggttgacat gtgatggatc atggccacag catccgcaag 2520 acgccctatt gatgaaacaa attgttgtat cccgtactgg tatcgacgaa gacactgtcg 2580 ataaactcat tgggcgtttt gccgcaatga aggatgtatg ggagccgatc acacttgaga 2640 gcgaagaaag caaggctgct caaacgatcg atgaagaagg cgttgcgcca ggctccgtgg 2700 acgaatcgtt attaaagctt aacgatgcaa agcaaactcg ctctaattca ggaacttccg 2760 gaccgcatac aaaaggcggt ggaagtggta ctggcaatga gctaccaaga agcaccaaac 2820 aacgtgcgaa gggacctcga caatctgcag gcctgcctaa acaaggcaaa gcaaacagta 2880 aaccgaatgg taacgtcgct gctggacaag cccagcatgg cggcatacct agagggaaaa 2940 ccccttccgg aggaaagacc aacgctcgaa gagcgcctcc gaaagctgga gctcagccgg 3000 gagcccccac caacccgaag tgaccctgcc cccgcaaaac tgtgagtggt tccgaaagaa 3060 cactcacacc cgttctaggc cgaaagggcc agagga 3096 //