ID AF327920; SV 2; linear; genomic RNA; STD; VRL; 7590 BP. XX AC AF327920; XX DT 03-JUN-2002 (Rel. 72, Created) DT 11-MAR-2021 (Rel. 144, Last updated, Version 7) XX DE Ljunganvirus 1 strain 87-012 polyprotein gene, complete cds. XX KW . XX OS Ljunganvirus 1 OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Picornaviridae; Parechovirus. XX RN [1] RP 1-7590 RX DOI; 10.1016/S0168-1702(02)00018-7. RX PUBMED; 11955639. RA Lindberg A.M., Johansson S.; RT "Phylogenetic analysis of Ljungan virus and A-2 plaque virus, new members RT of the Picornaviridae"; RL Virus Res. 85(1):61-70(2002). XX RN [2] RP 1-7590 RX DOI; 10.1128/JVI.76.17.8920-8930.2002. RX PUBMED; 12163611. RA Johansson S., Niklasson B., Maizel J., Gorbalenya A.E., Lindberg A.M.; RT "Molecular analysis of three Ljungan virus isolates reveals a new, RT close-to-root lineage of the Picornaviridae with a cluster of two unrelated RT 2A proteins"; RL J. Virol. 76(17):8920-8930(2002). XX RN [3] RP 1-7590 RA Johansson S., Niklasson B., Gorbalenya A., Lindberg A.M.; RT ; RL Submitted (13-DEC-2000) to the INSDC. RL Dept. of Chemistry and Biomedical Sciences, University of Kalmar, Kalmar RL S-391 82, Sweden XX RN [4] RC Sequence update by submitter RP 1-7590 RA Johansson S., Niklasson B., Gorbalenya A., Lindberg A.M.; RT ; RL Submitted (25-APR-2007) to the INSDC. RL Dept. of Chemistry and Biomedical Sciences, University of Kalmar, Kalmar RL S-391 82, Sweden XX DR MD5; 15b10313bb3ba2416118425ab13c5f0e. DR EuropePMC; PMC137002; 12163611. DR EuropePMC; PMC2224395; 17942560. DR EuropePMC; PMC2792847; 17553229. DR EuropePMC; PMC2916555; 20519478. DR RFAM; RF00210; IRES_Aptho. XX CC On Apr 25, 2007 this sequence version replaced AF327920.1. XX FH Key Location/Qualifiers FH FT source 1..7590 FT /organism="Ljunganvirus 1" FT /strain="87-012" FT /mol_type="genomic RNA" FT /note="prototype strain 87-012" FT /db_xref="taxon:1001061" FT CDS 718..7479 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q8JV21" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR009419" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="PDB:3JB4" FT /db_xref="UniProtKB/TrEMBL:Q8JV21" FT /protein_id="AAM46079.1" FT /translation="MAASKMNPVGNLLSTVSSTVGSLLQNPSVEEKEMDSDRVAASTTT FT NAGNLVQASVAPTMPVKPDFKNTDDFLSMSYRSTTAPTNPTKMVHLAHGTWTTNQHRQA FT LVASITLPQAFWPNQDFPAWGQSRYFAAVRCGFHIQVQLNVNIGSAGCLIAAYMPKTAH FT DHMNTYTFGSYTNLPHVLMNAATTSQADLYIPYVFNHNYARTDSDDLGGIYIWVWSALT FT VPSGSPTTVDVTIFGSLLDLDFQCPRPPGADTVIYTQGKRTVRKTKTSKFKWVRNKIDI FT AEGPGAMNIANVLSTTGGQTIALVGERAFYDPRTAGAAVRCKDLMEIARMPSVFLGEST FT EPDGRRGYFTWSHTISPVNWVFDDHIYLENMPNLRLFSSCYNYWRGSFVIKLTVYASTF FT NKGRLRMAFFPNREGAYTQDEAQNAIFVVCDIGLNNTFEMTIPYTWGNWMRPTRGNSLG FT HLRIDVLNRLTYNSSSPNAVNCILQIKMGDDAMFMVPTTSNLVWQGLHSWGSEMDLVDS FT LDNPDEIQDNEEIQTQNVEAAQGEEAATEVGLRATENDGSLSEQLNMSQPMFLNFKKHK FT VNIYAASHTKVDHIFGRAWAVGVFNTETAAIQKFDLHFPTSTHGALSRFFCFWTGELNI FT HILNVSTTNAFLKVAHTWFGTDSGIARTATLESNGTMIIPPNEQMTLCVPYYSEVPLRC FT VKGSDRNSAGLGSLFTQAVGRTISNRVQIFVSFRCPNFFFPLPAPREATSRSILERVDE FT ANAEELEAVLEARTPDAPLRLKFNPEDPLKQLREAAKAYFNIMHSDEMDFAGGKFLNQC FT GDVETNPGPDIELVYKNRGFYKHYGVRFGGHIYHLNSQDILSTAITGKSDFIKEEDDGK FT WVHAMTAPLDYFTEKYINSMVGSKHIFSATSNCETIARDLFPGRKEITQSKALGIIGVI FT LLSASLLSLLAVPWDYSSLQTVYNQSIEGDASGLTLLSQRCMTFFSNTMCETFNNDLVK FT FIIKILVRLLCYIVLYCHAPNMLTTMCLGTLLVLDITTCEILSANTKALFQALVDGDVK FT SLVWKIAENMQFAQSKDEQAEDMAATFNFASDMVNFVPMEQMRQEGWREFNDVSMSFRH FT VEWWLTMFKKVYNVLKSIFAPSIEQKAVDWIDRNQEYIADVLDHASNIIIKMKDPKEQR FT RASTISEYFEVLKQLKPIVSLCMKVAPSTKFSSQVFRIYSEMMRVNVRVPANTDLTRLE FT PIGIWVSSEPGQGKSFFTHMLSTCLLKSCNLEGIYTNPTGSEFMDGYIGQDIHIIDDAG FT QNREEKDLALLCQCISSVPFTVPMADLTEKGTFYTSKIVIATTNKFDFTSMVLTDPAAL FT ERRFPFHLRIRAVASYSRNNKLDVARSMAAMADGSCWEYSTDGGRAWKTLSMDELVKQI FT TAVYTQRSDALMVWKRKLNTIRNEMSPGSSTGRIFEPLEETLCALERRFGQLADSLKDN FT YHKTADELIEAIEDMMAPSQSPFACFAESYRPTIKYTASDKVKSWVKNHMNRWKEFVMR FT NKGWFTLFSVLSSFLSILTLVYLHYKKEKKEEERQERAYNPQTAISKKGGKPKLSLVKT FT TNFVNEAPYMQDLEHCFAQTAYISSPETQDIIHCAALSEDTILVYGHSQFYFNRYEDLR FT LHFKGAIFPIEGGKISQVTVNGQPMDLILVKIDKLPITFKNYTKYYTTEVGKETLLIWN FT SEKGRLAMPVQCVAPAGPVETMEGTITHKTYSYKVASKKGMCGGLLVTRVHGTFKVLGM FT HIAGNGQVARAAAVHFISNGAAGFMDQGVVVAKEKLQKPIYLPSKTALNPSPLNGVVPV FT KMEPAVLSPHDTRLEVIMPSVVKTAAAKYRVNIFNPDFEIWERVVDELKSKFRTKLGIH FT KHVSFQKAVQGFSSLSSLDLSTSPGQKYVEKGMKKRDLLSTEPFWMHPQLEGDVKDILG FT AVYSGKKPHTFFAAHLKDELRKKEKIAQGKTRCIEACSIDYVIAYRVVMSSLYEAIYQT FT PAQELGLAVGMNPWTDWDPMINVLQPYNYGLDYSSYDGSLSEQLMRYGVEILAYCHEQP FT EAVMILHEPVINSQHLVMDEIWHVNGGMPSGAPCTTVLNSICNLLVCTYLAYEQSLDIE FT VLPIVYGDDVIFSVSSPLDAEYLVQSAAQNFGMEVTSSDKSGPPKLLKMDEIEFLKRTT FT KFFPGSTYKVGALSLDTMEQHIMWMKNLETFPEQLVSFENELVLHGKEIYDDYKNRFNP FT ILNQWRVCMQDYEVALHRMLRYVFD" XX SQ Sequence 7590 BP; 2163 A; 1538 C; 1690 G; 2199 T; 0 other; ggtggggtgg gtacacttct cgctcgatga gtgggggtgt ggctcattgc ccacacctgg 60 ttggttccca ggttcataca ataaccatca ataaactttt aacatctaag atagtattat 120 cccatactag actggacgaa gccgcttgga ataagtctag tcttatcttg tatgtgtcct 180 gcactgaact tgtttctgtc tctggagtgc tctacacttc agtaggggct gtacccgggc 240 ggtcccactc ttcacaggaa tctgcacagg tggctttcac ctctggacag tgcattccac 300 acccgctcca cggtagaaga tgatgtgtgt ctttgcttgt gaaaagcttg tgaaaatcgt 360 gtgtaggcgt agcggctact tgagtgccag cggattaccc ctagtggtaa cactagcctc 420 tgggcccaaa aggcatgtca tttgaccact caggtacaca accccagtga tgcacacgct 480 tagtaatggc ttagtaacaa acattgattg atcatttgaa agctgttagg aggtttaggt 540 atgacgggct gaaggatgcc ctgaaggtac ccataggtaa ccttaagcga ctatggatct 600 gatcaggggc ccaccatgta acacatgggt agaagtcttc ggaccttggg ttaaaaaacg 660 tctaggcccg ccccccacag ggatgtgggg tttcccttat aaccccaata ttgtataatg 720 gctgcatcca aaatgaatcc cgttggcaac ctgctctcca cagtctcctc aaccgttgga 780 tctcttctac aaaacccctc tgttgaagaa aaggaaatgg attctgaccg tgttgctgcc 840 tctactacaa ccaatgctgg taatttggta caagcttctg tggccccaac tatgcctgtc 900 aagccagatt ttaaaaacac agatgatttc ttgtccatga gctaccgttc aacaacagcc 960 ccaaccaacc ccacaaaaat ggttcacttg gcacatggca cttggacaac taatcagcac 1020 agacaggcat tggtcgcatc aattactcta ccgcaggcat tttggcccaa tcaagatttt 1080 ccagcatggg ggcagtctcg ttattttgca gcagtgcgct gtggctttca tattcaagta 1140 cagttgaatg ttaacatcgg ttctgctggt tgcttgattg ccgcgtacat gccaaagacg 1200 gcccatgatc atatgaacac ctatactttt ggttcttaca ccaacctgcc acatgttttg 1260 atgaatgcgg caacgacatc ccaggctgat ctctatatac cctatgtttt taatcataac 1320 tatgcaagaa ctgattcaga tgatttagga ggcatttaca tttgggtttg gtcagctctc 1380 acagttccat caggttcacc tacaacagtg gatgtgacca tttttggttc attactcgac 1440 ttggattttc agtgtcctcg tcctcctggt gcagacacag taatttacac acaagggaaa 1500 agaactgttc gaaagaccaa gacatcaaag ttcaaatggg tcaggaataa aattgacata 1560 gctgaaggtc caggagcaat gaacatcgct aatgttctct ccacaactgg tggtcaaact 1620 attgccttgg ttggtgaaag agcattctat gacccaagaa cagctggtgc tgcagtgagg 1680 tgcaaggacc tcatggagat cgccagaatg ccaagtgtgt tcttaggaga gagtactgaa 1740 ccagatggtc gaaggggcta tttcacctgg tcacatacaa tctcacctgt taattgggtt 1800 tttgatgacc acatttattt ggaaaacatg cccaatctga gattattctc ctcctgttac 1860 aactattgga ggggctcctt tgttattaaa ctgacagttt atgcgtcaac tttcaacaaa 1920 ggacgcttga ggatggcatt tttcccaaac agagaaggcg cctacacaca ggatgaagct 1980 cagaacgcaa tctttgttgt gtgtgatata ggcttgaata atacctttga gatgaccatc 2040 ccctacactt ggggcaactg gatgagacca acaagaggaa actccttggg acatctgagg 2100 attgatgtgt tgaaccgtct tacatacaac agttcttccc caaatgcagt caactgcatt 2160 cttcagatta agatggggga tgatgcaatg ttcatggtgc ctaccacatc taatctagtt 2220 tggcaaggtc tgcactcatg gggttcagaa atggacttgg tggactctct cgacaatcca 2280 gacgagatac aagacaatga ggaaatacaa acccaaaatg tggaggctgc acaaggggaa 2340 gaagctgcga ctgaagttgg tcttagggca acagaaaatg atggcagtct ttcagaacaa 2400 ttgaatatga gtcaacccat gttcctgaat tttaagaagc ataaagtcaa catctatgca 2460 gcatcccata ccaaagttga tcatattttt ggaagagctt gggcagtggg ggtttttaac 2520 acagaaacag ctgccataca aaaatttgat ttgcactttc caacttctac tcatggtgca 2580 ttgtctagat ttttctgctt ctggactgga gagttaaata ttcacatttt gaatgtgtca 2640 accacaaatg cctttttgaa agttgctcac acatggtttg gcactgattc tggaattgcc 2700 cggacagcta ctttggaatc aaatggaaca atgattatac caccaaacga gcaaatgaca 2760 ctttgtgtac cctattattc tgaggttcca ttaagatgtg ttaaaggttc agacaggaat 2820 tcagccggac ttggttctct cttcacacag gctgtgggca gaacaatctc taatcgggta 2880 caaatctttg tgagcttccg ctgtcctaat tttttcttcc cactacctgc gcccagggaa 2940 gccacgtctc gaagcatatt ggaacgagtg gatgaagcaa atgcggaaga acttgaagct 3000 gtcttggaag ctagaacacc agatgcaccg ctccgcctca agtttaatcc agaagatcct 3060 ttgaaacaat tgcgggaggc ggccaaggct tactttaata taatgcacag tgatgaaatg 3120 gattttgccg gggggaaatt tttgaaccaa tgtggtgacg tggaaaccaa cccaggccct 3180 gacattgagt tggtctataa aaacagaggc ttctataagc attatggagt tagatttggt 3240 ggtcatatct accacttgaa ttcacaagac attctgtcaa ccgcaattac aggcaagtct 3300 gacttcatta aggaagaaga tgatggcaaa tgggttcatg ctatgacagc accattggac 3360 tactttactg aaaagtacat caattcaatg gttggctcca aacacatctt ttccgccacc 3420 tccaattgtg agaccattgc cagagatctt ttcccaggga gaaaggaaat aactcagtcc 3480 aaagccttgg ggattattgg ggtcatcttg ttgtcagcct ctcttctttc attgcttgct 3540 gtaccctggg attattcctc acttcaaact gtttataacc aatccattga aggtgatgct 3600 tctggcctca cactcctaag tcaaagatgc atgacttttt tttccaatac aatgtgtgaa 3660 acttttaata atgatcttgt taagtttatt attaagattt tggtgcggct tttgtgctac 3720 atcgttcttt attgccatgc accaaatatg ctgacaacca tgtgtctggg aactcttctt 3780 gttttggaca ttacaacttg tgaaatcttg tctgctaaca ccaaagcact ctttcaggca 3840 ttggttgatg gtgatgtgaa gagtcttgtc tggaaaattg ctgagaatat gcaatttgcc 3900 caatccaagg atgaacaagc tgaggacatg gcagcaacct tcaactttgc ctctgacatg 3960 gttaattttg tgccaatgga acagatgaga caagaaggct ggagagaatt taatgatgtt 4020 tctatgtcct ttcggcatgt tgaatggtgg ctgactatgt tcaaaaaggt gtacaatgtt 4080 ctgaaaagta tttttgctcc tagtattgaa cagaaggctg ttgattggat agatcgcaat 4140 caagagtaca ttgccgatgt tttggaccat gcttccaaca tcatcataaa aatgaaggat 4200 ccaaaagaac agcggagagc atcaaccatt agtgaatact ttgaggtttt gaaacaacta 4260 aagccaattg tgtccctttg catgaaggtt gccccctcca ctaagttttc ctctcaagtg 4320 tttagaatct attctgaaat gatgagggtc aatgttagag tgcctgcgaa tactgacttg 4380 actagactgg aacccattgg catttgggtt tctagtgagc caggacaggg taaatcattc 4440 tttacacata tgttgagtac ctgtcttctg aagtcctgca atttagaagg aatttatacc 4500 aaccccacag gttcagaatt tatggatggc tatattgggc aggacattca tatcatagat 4560 gatgcagggc aaaatagaga ggaaaaagat ttggccttgt tgtgtcagtg tatttcttct 4620 gtgcctttta ctgttccaat ggcagatttg acagagaagg gcacttttta tacaagcaaa 4680 attgtgattg ccaccaccaa taaatttgat tttacctcaa tggttttgac agatccagca 4740 gcccttgaaa ggagatttcc gttccacttg cgcattagag ctgtagccag ctattcgcgc 4800 aacaacaaac tagatgtggc ccgttcaatg gcggccatgg cagatggttc ttgctgggaa 4860 tattccacag atggtggtag ggcttggaag accctctcca tggatgaact tgtgaaacaa 4920 atcacggcag tttacacaca gaggtcagat gcccttatgg tttggaaaag gaagttgaat 4980 accatcagga acgaaatgag ccctggatca tccaccggca ggatttttga acccttagag 5040 gaaacactct gtgctttgga acgtcgcttt ggtcaacttg ctgatagtct taaagacaac 5100 tatcataaaa cagctgatga gttgattgaa gctatagaag atatgatggc accgtcacag 5160 agtccttttg catgctttgc tgaatcctat cgacccacca ttaaatatac tgccagtgat 5220 aaagttaaat catgggttaa aaatcatatg aatagatgga aagaatttgt aatgagaaat 5280 aaaggctggt ttacactttt ttctgtgctc tcatcatttc tctcgattct tactcttgtc 5340 tatttacact ataaaaagga gaagaaagag gaagagagac aggagcgggc ttacaaccct 5400 caaactgcaa tttctaagaa ggggggtaag cctaagctct cattagtgaa aaccacaaac 5460 tttgttaatg aagcacccta tatgcaagat cttgaacatt gctttgcaca aacggcctac 5520 atttcttctc cagaaaccca agatataata cattgtgctg ccttgagtga agacaccatt 5580 ttggtttatg gacattctca gttttatttt aaccgctatg aggacctgcg gttacatttt 5640 aaaggggcca tttttcccat agaaggggga aaaatttctc aagttaccgt gaatggacag 5700 cctatggatt tgatacttgt gaagatagat aaacttccaa taacatttaa aaattataca 5760 aaatattata caactgaggt tggcaaggaa actcttttaa tttggaattc agaaaagggc 5820 aggttggcca tgcctgttca atgtgtggct ccggctggtc cggtggagac aatggaagga 5880 acaattactc ataagaccta ttcatataaa gtggcatcaa aaaaaggaat gtgtgggggc 5940 cttttggtca ctagagtgca tggcacattc aaggttctgg gaatgcacat tgcaggcaat 6000 gggcaagttg cacgagctgc agcagttcac tttatatcca atggtgcagc tggctttatg 6060 gatcaaggtg ttgttgtggc caaagaaaag ttacaaaagc ccatttattt gccatctaag 6120 acagctttga atcccagtcc cttgaatggt gtagtccccg tgaaaatgga accagctgtg 6180 cttagtcctc atgacaccag gcttgaagtc atcatgccca gcgttgtgaa aacagcggca 6240 gctaagtata gagttaatat ttttaatcct gattttgaga tttgggagag agtggtggat 6300 gagttaaaat caaagtttag aaccaaactt ggaattcata aacatgtctc ttttcagaaa 6360 gcagttcagg gtttctcctc cctttcatct cttgatcttt ccacatcccc aggacaaaag 6420 tatgttgaaa agggtatgaa gaagagagat cttttgtcca ctgagccatt ttggatgcat 6480 cctcaattgg aaggtgatgt taaagatata cttggggccg tttactctgg taaaaagccc 6540 catacatttt ttgctgcaca tttgaaagat gagttgcgca aaaaagaaaa gattgcgcaa 6600 ggaaagaccc gctgcattga agcctgttca attgactatg tgattgccta cagagttgta 6660 atgtcctcac tctatgaggc aatctatcaa actccggctc aggagttggg cctggcagtg 6720 ggaatgaatc cctggacaga ttgggatcca atgatcaatg ttttgcagcc atataactat 6780 ggcctggatt actcatctta tgatggcagc ctttctgaac aactgatgag atatggagtg 6840 gaaatacttg cctactgtca tgaacaacca gaggctgtaa tgattcttca tgaacctgtt 6900 ataaactctc aacaccttgt gatggatgaa atctggcatg tgaatggtgg aatgccctca 6960 ggggccccat gtacaactgt gctaaattcc atatgcaatc tgctagtttg tacatatttg 7020 gcctatgagc agagcttgga tattgaggtg ttacccattg tttatggaga tgatgtaatt 7080 ttttctgttt catccccttt ggatgctgaa tacttggttc agagtgcagc ccaaaatttt 7140 ggaatggaag tgacctcatc agataaatct ggtcccccta aacttttgaa aatggatgag 7200 attgaatttt taaagaggac aacaaaattt tttcctggct ccacctacaa ggtgggggcc 7260 ttgagcctgg ataccatgga acaacatatt atgtggatga agaatttgga aacctttcca 7320 gaacaacttg ttagttttga gaatgaattg gtgttgcatg ggaaagaaat ttatgatgat 7380 tataaaaata ggtttaatcc tattttgaat caatggcgag tgtgcatgca ggactatgaa 7440 gtggccctgc atcgcatgct acgctatgtt tttgattgaa ttgatttagt ttgattttga 7500 ttttattagc tttagtttat gtaagttaga attagattat tttagtttag ttttaaagat 7560 tttgatttga ttgaatttgg cccaccaatc 7590 //