Dbfetch
ID AF327436; SV 1; linear; genomic DNA; STD; VRL; 2754 BP. XX AC AF327436; XX DT 09-MAR-2001 (Rel. 67, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 5) XX DE Tomato leaf curl Malaysia virus segment A, complete sequence. XX KW . XX OS Tomato leaf curl Malaysia virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2754 RA Shih S.L., Roff M.M.N., Nakhla M.K., Maxwell D.P., Green S.K.; RT "A new geminivirus associated with a leaf curl disease of tomato in RT Malaysia"; RL Zhi Wu Bao Hu Xue Hui Hui Kan 40:435-435(1998). XX RN [2] RP 1-2754 RA Shih S.L., Roff M.M.N., Nakhla M.K., Maxwell D.P., Green S.K.; RT ; RL Submitted (11-DEC-2000) to the INSDC. RL Virology unit, Asian Vegetable Research and Development center, P.O. Box RL 42, Shanhua, Tainan, Taiwan, Republic of China XX DR MD5; 0ea2e6409513fdcfc2119ab91d76967f. DR EuropePMC; PMC2170441; 17963488. XX FH Key Location/Qualifiers FH FT source 1..2754 FT /organism="Tomato leaf curl Malaysia virus" FT /segment="A" FT /mol_type="genomic DNA" FT /country="Malaysia:Klang" FT /clone="MT1-5" FT /note="collected in August 1997" FT /db_xref="taxon:223346" FT CDS 124..483 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:Q992L9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q992L9" FT /protein_id="AAK16436.1" FT /translation="MTNMWDPLLNEFPETVHGLRCMLAKKYVQEVQKTYSPDTIGYDLF FT CDLINLLNTKNYEQASSRYSHFYARLQGTPPSELRHPIFQPCCCPHCPRHKQKASMDTE FT AHVSEAQNVQNVQKP" FT CDS 293..1066 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:Q992L8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q992L8" FT /protein_id="AAK16437.1" FT /translation="MSKRPADIVISTPVSKVRRRLNFDTPYSSRAVAPTVLVTNKRRAW FT TQRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGNGFTH FT RVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTAMDFGQVFNMYDNE FT PSTATVKNDMRDRYQVLRKFTATVTGGQYASKEQALVRKFMKVNNYVVYNHQEAAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT CDS complement(1063..1467) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:Q992L7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q992L7" FT /protein_id="AAK16438.1" FT /translation="MDFRTGELLTVTQCESGVYTWTIKNPLYFKITQHHERPFLRNHDI FT VTIQVQFNHNLRKALGIHQCFLTCQIWTRLHLQTWRFLRVFKYQCMRYLNRLGVISINN FT VIRAMSHVVYDVFEGTIDAQFSHRIKFNIY" FT CDS complement(1208..1615) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:Q992L6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q992L6" FT /protein_id="AAK16439.1" FT /translation="MQNSSPSTAHCTQVPIKVQHRIAKKKPVRRRRVDLTCGCSYYFSI FT NCANHGFSHRGITHCNSMREWRVYLDDQKSPLFQDNPAPREAIPEEPRHRNHTSAVQPQ FT PEESVGDTPMFSNLPNLDSFTSSDLAFLKSI" FT CDS complement(1515..2603) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:Q992L5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q992L5" FT /protein_id="AAK16440.1" FT /translation="MAPPRPFKINAKNYFLTYPQCSLTKEDALSQLQNLNTPTNKKYIK FT ICRELHEDGSPHLHVLIQFEGKYQCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLDWGEFQIDGRSARGGQQTANDAYAQALNSGSKSEALNVIKELAPKDFVLQFH FT NLNSNLDRIFAPPVEVFVCPFLSSSFDQVPEELEEWVSKNVRDAAARPWRPNSIVIEGE FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKEWALKNAEFITLNSPL FT YSGTNQSATQNSQEEASSQAES" FT CDS complement(2156..2446) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q992L4" FT /protein_id="AAK16441.1" FT /translation="MGALISTCLSSSKGNTSARITDSSTWYPQPGQHISIRTFRELNPA FT PTSSPTSTRTETPSIGESFRSTEDLQEGVNRQPMTLTHRHLTAAVSQRLLM" XX SQ Sequence 2754 BP; 738 A; 570 C; 619 G; 827 T; 0 other; accggatggc cgcgattttg gaaaaagtgg gccccgccac taacaaatgt ccgccactaa 60 gaacgctccc tcagagtcta tttagtgtgt gggcccctat ttatatcttg gtggccaagt 120 tttatgacaa atatgtggga tccacttttg aatgagtttc cggagactgt tcatggtcta 180 cggtgtatgt tagctaagaa atacgtacag gaagttcaga agacgtattc tccggatacg 240 attgggtacg atttgttctg tgatctcatc aatcttctca acacaaaaaa ttatgagcaa 300 gcgtccagca gatatagtca tttctacgcc cgtctccaag gtacgccgcc gtctgaactt 360 cgacacccca tattccagcc gtgctgttgc ccccactgtc ctcgtcacaa acaaaaggcg 420 agcatggaca cagaggccca tgtatcggaa gcccagaatg tacagaatgt acagaagccc 480 tgatgttccc aaaggatgcg aaggcccatg taaggtccag tcttatgagc agagacatga 540 tatatctcat gtgggtaagg ttttatgtgt tagtgacgtt actcgtggta atgggtttac 600 ccatcgtgtg ggcaagagat tttgtgtgaa gtccatttac gttttgggta aaatatggat 660 ggacgagaat atcaagacga agaatcacac caacactgtg atgttcttcc ttgttcgtga 720 tagaaggccc tttggcactg cgatggattt tggacaggtt tttaacatgt atgacaacga 780 gcctagtact gcaactgtga agaacgatat gcgagatcga tatcaggtgt tgaggaaatt 840 cactgcaacc gttacgggtg gacaatatgc ctctaaggaa caggcgttgg ttaggaagtt 900 tatgaaggtc aataattatg ttgtgtataa tcatcaggag gctgctaagt atgaaaatca 960 tactgagaac gctcttttgt tgtatatggc atgtactcat gccagtaatc cagtgtatgc 1020 aacattgaag atcagaatct atttctatga ttctgttcag aattaataaa tattaaattt 1080 tattctatga gaaaattgag catcaattgt gccctcaaat acatcataca ccacatggga 1140 cattgcccta attacattgt taatactaat aactcctaac ctatttaagt acctcatgca 1200 ttgatattta aatactctta agaaacgcca agtctgaaga tgtaaacgag tccagatttg 1260 gcaggttaga aaacattggt gtatccccaa cgctttcctc aggttgtggt tgaactgcac 1320 ttgtatggtt acgatgtcgt ggttcctcag gaatggcctc tcgtggtgct gggttatctt 1380 gaaatagagg ggatttttga tcgtccaagt atacacgcca ctctcgcatt gagttacagt 1440 gagtaattcc cctgtgcgaa aatccatgat ttgcacaatt tatgctgaag tagtaggaac 1500 acccacacgt tagatcaact ctccgcctgc gaactggctt cttcttggct attctgtgtt 1560 gcactttgat tggtacctga gtacaatggg ctgttgaggg tgatgaattc tgcattcttt 1620 aatgcccact cttttaatgc tgaattcttt tcctcatcca agtactcttt atatgatgac 1680 gttgggcctg gattgcagag gaagatagtt gggatgccac ctttaatttg aattggcttc 1740 ccgtacttag tgttgctttg ccagtccctt tgggccccca tgaattcttt aaagtgcttt 1800 agatagtggg gatcaacgtc atcaatgacg ttataccacg cgtcattgct gtacaccttt 1860 ggactcagat ctagatgacc gcacagataa ttatgtgggc ccaacgaacg ggcccacatt 1920 gtctttcctg tacgactctc tccctctatg acaatactat tgggtctcca aggccgcgca 1980 gcggcatccc tgacgttctt agaaacccac tcttcaagtt cttcgggaac ttgatcgaaa 2040 gaagaagaaa gaaaaggaca aacaaaaacc tctacaggag gtgcaaaaat cctatctaaa 2100 ttagaattta aattatgaaa ttgtaaaaca aaatctttag gagctaactc cttaattaca 2160 ttaagagcct ctgacttact gccgctgtta agtgcctgtg cgtaagcgtc attggctgtc 2220 tgttgacccc ctcttgcaga tcttccgtcg atctgaaact ctccccaatc gagggtgtct 2280 ccgtccttgt cgatgtagga cttgacgtcg gagctggatt tagctccctg aatgttcgga 2340 tggaaatgtg ctgacctggt tggggatacc aagtcgaaga atctgttatt cttgcactgg 2400 tatttccctt cgaactggat aagcacgtgg agatgagggc tcccatcttc gtgaagctct 2460 ctgcagattt tgatatattt cttgttggtt ggggtgttta ggttttgtaa ttgggaaagt 2520 gcatcttcct tagtgagaga gcactgtggg tatgtgagga agtaattttt ggcatttatt 2580 ttaaatggtc ttggaggagc cattgacttg gtcaatcggt gtctctacta attctctatc 2640 aatcggtgta ctggagtcct atatatagtt agaccccaaa tggcattgtc gtaattccca 2700 aaggaaattc aaaattcaaa ttcaaattcc aaaagcggcc atccgtataa tatt 2754 //