ID AF325740; SV 1; linear; genomic RNA; STD; VRL; 2773 BP. XX AC AF325740; XX DT 08-OCT-2002 (Rel. 73, Created) DT 17-JUL-2008 (Rel. 96, Last updated, Version 3) XX DE Cowpea chlorotic mottle virus strain T segment RNA2, complete sequence. XX KW . XX OS Cowpea chlorotic mottle virus OC Viruses; Riboviria; Bromoviridae; Bromovirus. XX RN [1] RP 1-2773 RX DOI; 10.1007/s00705-008-0137-3. RX PUBMED; 18604602. RA Quan S., Nelson R.S., Deom C.M.; RT "The methyltransferase domain of the 1a protein of cowpea chlorotic mottle RT virus controls local and systemic accumulation in cowpea"; RL Arch. Virol. 153(8):1505-1516(2008). XX RN [2] RP 1-2773 RA Quan S., Nelson R.S., Deom C.M.; RT "The 5'-half of the 1a protein gene of cowpea chlorotic mottle virus RT facilitates phloem-dependent accumulation in cowpea."; RL Unpublished. XX RN [3] RP 1-2773 RA Quan S., Nelson R.S., Deom C.M.; RT ; RL Submitted (01-DEC-2000) to the INSDC. RL Plant Pathology, University of Georgia, Plant Sciences Building, Athens, GA RL 30602, USA XX DR MD5; 08060e09f931064d3e7bcf82f6ae8b92. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..2773 FT /organism="Cowpea chlorotic mottle virus" FT /segment="RNA2" FT /strain="T" FT /mol_type="genomic RNA" FT /db_xref="taxon:12303" FT CDS 109..2535 FT /codon_start=1 FT /product="2a protein" FT /db_xref="GOA:Q8BEM2" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR007610" FT /db_xref="UniProtKB/TrEMBL:Q8BEM2" FT /protein_id="AAN37636.1" FT /translation="MSKFIPEGETYHVPSFQWMFDQTLESDSHHDEAIFVTESINESGV FT DTSVEITADGTLASYMHAVKPLVEDGLLNPPFDQARWGLCCKNVVDVYDGLLGYRLIPM FT AEAARMLYLEIDGSFVDESECDDWRPVDTSDGFTEAMFDVMNEIPGEETKNTCALSLEA FT ESRQAPETSDMVPSEYTLADRYVTTREEFASVDSDYDISLNLVSPVEFRVGVCEDTYRH FT SEADDPTMPQYHDRISLKSLEAAGHHMLPTHAYFDDTYYQALEELGDYNVDISKLSVRQ FT SDVDWYRDPEKYYEPELSIGSFQRRIGTQKTVLTALKKRNADVPELADSVDIKRVACEV FT AEKFKRAYLNHSGIGLLGQSMDVMYRGLEYHKKWKDHKDLTGVTVLSEINSQRYQDMIK FT SDIKPGVSDTLHLERAVAAPIPFHGKGVTSCFSPYFTACFEKFSKALKSRFVVPIGKIS FT SLELKNVPLSNKWFLEADLSKFDKSQGELHLEFQREILLSLGFPAPLTNWWCDFHRESM FT LSDPHAGVNMPVSFQRRTGDAFTYFGNTLVTMAMMAYCCDMNTVDCAIFSGDDSLLICK FT SKPHLDANVFQSLFNMEIKVMDPSLPYVCSKFLLETEMNNLVSVPDPMREIQRLAKRKI FT IKSPELLRAHFESFCDRMKFLNKLDEKMINLLCKFVALKYKKPDVENDVRVAIAAFGYY FT SENFLRFCECYATEGVNIYKVKHPITQEWFEASRDRDGDWFHDWRNPKFPTALDKVWRF FT FGKYARDDPMKHIEERDRRHRLNRAMNSSLKLAYDRRSLSKDKETVAWVRKTLSK" XX SQ Sequence 2773 BP; 768 A; 524 C; 656 G; 825 T; 0 other; gtaatccacg agaacgaggt tcaatccctt gtcgactcac gggtctccat cagttgaaaa 60 cagtttatac ttttcttctt gatatttttc ttctttactt ccattaatat gtctaagttc 120 attccagaag gtgagactta ccacgttccc tcattccaat ggatgtttga tcagactctc 180 gaatctgact cacaccatga tgaggcgata ttcgtaaccg aatcgattaa tgaaagtgga 240 gttgatactt ctgttgaaat aaccgcagat ggcacgctag caagttatat gcatgccgta 300 aagcccctag tggaggatgg tcttctgaat cccccttttg atcaagctag atggggtctt 360 tgctgcaaga acgtcgttga cgtttatgac gggctgctcg gttatagact cataccaatg 420 gctgaagccg ctagaatgtt gtacttggaa atcgacggtt cattcgttga tgaatctgag 480 tgtgacgatt ggcggccggt agatacctct gatggtttca ccgaagcaat gtttgatgtg 540 atgaatgaga ttcctggcga ggaaacaaaa aatacatgcg ctttaagtct tgaagctgaa 600 tcaaggcaag ctccagaaac ttccgatatg gtgccgtctg aatatacgtt ggcagatagg 660 tacgttacca ccagagagga gttcgcgtct gttgactcgg attatgacat atccttaaac 720 ctggtgagcc ctgtggagtt cagggtggga gtgtgtgaag acacataccg tcattcggaa 780 gctgatgatc ctacgatgcc tcaatatcac gataggatca gtttaaaatc gctggaggcg 840 gctggccatc acatgttacc gactcatgcc tattttgacg acacttacta ccaggctttg 900 gaagagctag gcgattataa tgtcgatatt agtaagttgt ctgtccggca gagtgatgtt 960 gattggtatc gtgaccctga aaagtactat gagcctgagt taagtatagg gtcattccaa 1020 cgtagaatag gtacgcaaaa gacggtcctc accgcgttaa agaaacggaa cgctgacgtg 1080 cctgagttag cagattctgt tgatattaaa agagtagcct gtgaagtagc tgaaaaattt 1140 aaacgggctt atcttaatca ttccggtata gggctgttag ggcaaagtat ggatgtcatg 1200 tacagaggac ttgagtacca taagaaatgg aaagaccaca aagacctgac tggtgtgaca 1260 gttttgtctg agattaattc gcagaggtat caggacatga taaagtctga tattaaacca 1320 ggtgtctcgg atacgttaca cctcgaacga gctgttgctg caccaatacc atttcatggt 1380 aaaggagtta ctagctgctt ctcaccatat tttacggctt gtttcgagaa gttttcaaaa 1440 gctttaaaat caaggtttgt ggtccccata gggaagatct cctccctgga actgaaaaat 1500 gttcccctct cgaataaatg gtttcttgag gcggatttga gtaagtttga taaatctcag 1560 ggtgagcttc atcttgagtt ccaaagagag atattgttgt cattgggttt tccagcccct 1620 ttgactaatt ggtggtgtga tttccatagg gaatctatgc tatcggatcc tcatgctgga 1680 gttaacatgc cagtttcctt tcagcgtcgt actggtgatg cttttactta ttttgggaat 1740 actttggtga ctatggccat gatggcctat tgttgcgata tgaacaccgt ggactgtgct 1800 atcttttccg gtgatgattc tctgttaatt tgtaaaagta aaccacatct ggatgctaat 1860 gtttttcaat ctctgtttaa tatggaaatt aaagttatgg acccaagttt gccatacgtt 1920 tgtagtaagt ttcttttaga aactgaaatg aataacttgg tgtctgtgcc tgatcctatg 1980 agagagatac agagactggc taagcgaaag atcatcaaat cgcctgagtt gttaagagcc 2040 cactttgagt ccttttgtga taggatgaaa ttcctaaaca aattggatga aaaaatgata 2100 aatttattat gcaagtttgt ggctctcaag tataaaaaac ctgacgttga aaacgatgtc 2160 agagtagcca ttgctgcttt cggctactac tcagaaaatt tcttgagatt ttgcgaatgt 2220 tatgcgactg aaggggtcaa tatatataag gtaaaacatc ccatcaccca ggagtggttc 2280 gaggcctcta gggatcgaga cggtgactgg ttccatgact ggcgtaatcc gaagtttccc 2340 actgccttag ataaggtttg gagattcttt ggaaaatacg cgagagatga tcctatgaag 2400 cacatagaag agagagatag gagacatagg ctcaatcgag ccatgaattc ttccttgaaa 2460 cttgcctatg atcgtaggag tcttagtaag gataaagaaa ccgttgcgtg ggtgcgtaag 2520 accctttcta aataatgttg gtcacattta agacttgttt agtccacatt aggactggtt 2580 ctaacagttt ctttaaactg taatcgtcgt tgcgacgttg gtttgcttac aagcaatcaa 2640 gctgcctttg agttttactc cttgaactct tcagaagaat tcttcggaat tcgtaccagt 2700 atctcacata gtgaggtaat aagactggtg ggcagcgcct agtcgaaaga ctaggtgatc 2760 tctaaggaga cca 2773 //