ID AF325736; SV 1; linear; genomic RNA; STD; VRL; 3174 BP. XX AC AF325736; XX DT 08-OCT-2002 (Rel. 73, Created) DT 17-JUL-2008 (Rel. 96, Last updated, Version 3) XX DE Cowpea chlorotic mottle virus strain R segment RNA1, complete sequence. XX KW . XX OS Cowpea chlorotic mottle virus OC Viruses; Riboviria; Bromoviridae; Bromovirus. XX RN [1] RP 1-3174 RX DOI; 10.1007/s00705-008-0137-3. RX PUBMED; 18604602. RA Quan S., Nelson R.S., Deom C.M.; RT "The methyltransferase domain of the 1a protein of cowpea chlorotic mottle RT virus controls local and systemic accumulation in cowpea"; RL Arch. Virol. 153(8):1505-1516(2008). XX RN [2] RP 1-3174 RA Quan S., Nelson R.S., Deom C.M.; RT "The 5'-half of the 1a protein gene of cowpea chlorotic mottle virus RT facilitates phloem-dependent accumulation in cowpea."; RL Unpublished. XX RN [3] RP 1-3174 RA Quan S., Nelson R.S., Deom C.M.; RT ; RL Submitted (01-DEC-2000) to the INSDC. RL Plant Pathology, University of Georgia, Plant Sciences Building, Athens, GA RL 30602, USA XX DR MD5; 7755ca431287238e917ebe3353309eb7. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3174 FT /organism="Cowpea chlorotic mottle virus" FT /segment="RNA1" FT /strain="R" FT /mol_type="genomic RNA" FT /db_xref="taxon:12303" FT CDS 71..2950 FT /codon_start=1 FT /product="1a protein" FT /db_xref="GOA:Q8BEM6" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q8BEM6" FT /protein_id="AAN37631.1" FT /translation="MASSLDLLKLISERGADSRGASDIVEQQAVKQLLEQVDYSKRSKK FT INIRNKLTPDEENAFRARYGGAFDLNLTQQYHAPHSLAGALRIAEHYDCLSSFPPLDPI FT IDFGGSWWHHYSRKDTRIHSCCPVLGVRDAARHEERLCRMRKLLQECDDREDLPDFCID FT RAESCSVQADWAICIHGGYDMGFTGLCEAMHSHGVRILRGTIMFDGAMLFDNEGMLPLL FT KCRWMKSGKGKSEVIKFDFMNESTLSYIHSWANLGSFLTESVHVIGGTTYLLERELLKC FT NIMTYKIVATNLRCPKETLRHCVWFENISQYVAVNIPEDWNLTHWKPVRVAKTTVREVE FT EIAFRCFKENKEWTENMKAIASILSAKSSTVIINGQAIMAGERLNIDEYHLVAFALTMN FT LYQKYENIRNFYSEMEWKGWVNHFKTRFWWGGSTAISSTGKIREFLAGKFPWLRLDSYK FT DSFVFLSKISDVKEFENDSVPISRLRSFFSSEDLMERIELELESAQKRRREKKKKEAEK FT IDEEEFQDAIDIPNDAVRDDAKPEKEPKPEVTVGAEPTGPEEASRHFAIKEFSDYCRRL FT DANAVSNLRRLWAIAGCDGRTARNKSILETYHRVDDMINLHYPGGQWLYPKKYDYEVGY FT NDSGLGPKFDDELYVVDKSCICANYQVLSKNTDSLKAPSCKISLCDGVAGCGKTTAIKS FT AFNIAEDLVVTANKKSAEDVREALFPENPSSEIALKVIRTADSALMHGLPQCKRLLVDE FT AGLLHYGQLLAVAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWR FT CPQDVISAVQTLKKKAGNRTSKYLGWKSHSKVSRSISHKEIASPLQVTLSREKFYLTMT FT QADKAALVSRAKDFPELDKAWIEKHIKTVHEAQGVSVDHAVLVRLKSTKCDLFKTEEYC FT LVALTRHKVTFEYLYVGMLSGDLIFRSIS" XX SQ Sequence 3174 BP; 882 A; 603 C; 779 G; 910 T; 0 other; gtaatccacg agaacgaggt tcaatccctt gtcgactcac ggagtatcga acttttctaa 60 attttattta atggcaagtt ctttagatct tttgaaattg atttctgaga gaggcgctga 120 cagccgaggc gcttcggaca tagttgaaca acaagctgta aagcaattgc ttgagcaagt 180 tgactactcg aaaaggtcca agaaaatcaa tattagaaat aaactcacgc ccgatgaaga 240 gaatgctttc cgggcgcgct atggtggagc ttttgatttg aatttaactc aacaatatca 300 tgctccccat agtttggctg gagctctgcg aatagcggag cattatgact gtctttcaag 360 ttttccccct cttgatccca tcatcgattt tggtggttct tggtggcacc attattccag 420 gaaggacacg cgtattcaca gttgttgtcc agtgttgggc gtcagagatg ctgctcgaca 480 tgaagaacga ctatgtagaa tgcgtaagtt gttacaagaa tgcgacgaca gagaagatct 540 accagatttc tgtattgaca gagctgaatc ctgtagtgtc caggctgatt gggctatatg 600 tattcatggt ggttatgaca tgggtttcac aggtttatgt gaggccatgc attcccacgg 660 agtgcgtatt ttacggggta ctattatgtt cgacggtgct atgctgtttg acaacgaagg 720 catgttacct ttgttgaagt gccgttggat gaaatctgga aaaggtaaat ctgaggtcat 780 taaatttgat ttcatgaatg agagcacact ttcttatatt cattcttggg ccaatcttgg 840 ttcatttttg actgagtcag tgcatgtaat aggaggtact acttatctcc tagagcgtga 900 gctcttaaaa tgtaacatca tgacctataa aatcgttgct acaaatctga ggtgtcctaa 960 ggagacgttg cgacattgtg tttggtttga gaatatttcc caatatgtcg ccgttaatat 1020 ccctgaagac tggaatttga ctcattggaa acccgtacgt gtggcgaaga ccaccgtaag 1080 agaagtcgag gaaattgctt ttcggtgttt taaggagaat aaagagtgga cagagaatat 1140 gaaagcgatc gcatctattc tgtctgccaa atcttctaca gtcattatca acggtcaagc 1200 tatcatggcc ggagagagac taaacatcga tgagtatcat ctcgtcgctt ttgccctcac 1260 tatgaatctt tatcagaagt atgaaaatat tcgaaatttt tatagtgaga tggaatggaa 1320 gggctgggtc aaccacttta aaactagatt ttggtgggga ggaagtacgg ctatctcaag 1380 cactggtaag attcgagagt ttctggctgg taaattccct tggctgaggt tagactcgta 1440 caaagacagt tttgtttttc tgtcgaagat ctctgatgtc aaagagtttg agaacgattc 1500 agttcccatc tcgagactga ggagtttctt cagtagtgaa gacctcatgg agcgcattga 1560 attagagctt gaatctgcgc aaaagcgtcg tcgggagaag aagaagaaag aggctgaaaa 1620 aatcgatgag gaggaatttc aagatgccat cgatatcccg aatgatgccg tcagagatga 1680 cgctaaacct gaaaaggagc ctaaaccgga agtgaccgtt ggagctgaac caacaggccc 1740 cgaagaggca tcgagacact ttgccatcaa ggaattctct gattattgtc gtcgccttga 1800 tgctaacgct gtgtcaaatc ttcgtcgatt atgggccatt gctggctgcg acgggaggac 1860 tgcgaggaat aaatcgatcc ttgagactta tcatagggtt gatgatatga ttaatttgca 1920 ctaccctggg ggtcaatggt tataccccaa gaaatacgac tatgaagtgg gttacaacga 1980 ttcgggctta ggtccgaaat tcgatgatga gctttatgtc gttgacaaat cttgtatttg 2040 tgcgaattat caggtgctaa gtaaaaatac agatagcttg aaagcacctt cttgcaaaat 2100 ctcgttgtgt gacggagttg ctggatgcgg aaagaccacg gcaattaaat ccgcgttcaa 2160 catagctgag gacctagtgg taaccgctaa taagaagtcc gctgaagatg tcagggaggc 2220 tctatttcct gaaaatccat cgtccgagat agcgttaaaa gttataagga cggcagactc 2280 tgctttaatg catggtttgc cgcaatgtaa gcgcttattg gttgatgaag ctgggctact 2340 gcactatggt caactgctcg ctgtggctgc tctctgtaag tgtcagtctg ttcttgcatt 2400 cggagacacg gagcaaattt cttttaaatc gcgagatgca actttccgcc tgaaatatgg 2460 tgatttgcag tttgacagtc gcgatatagt tactgagaca tggagatgtc cgcaagatgt 2520 tatttccgca gttcagactc tgaaaaagaa ggcgggaaac aggacctcca aatatttggg 2580 ttggaaatcc cattctaaag tatccaggag cattagtcat aaagaaatag catcgccttt 2640 gcaggtgacg ctttcaaggg aaaaattcta tttgacaatg actcaggctg ataaagccgc 2700 ccttgtttcc agggctaagg atttcccaga gcttgataag gcctggattg agaaacacat 2760 aaaaaccgtt catgaggctc aaggtgtgtc agtagatcac gctgttttgg tgagacttaa 2820 atccaccaag tgtgatctat ttaaaactga agaatattgt ctggtggctt taactcgaca 2880 taaggttacc tttgagtacc tttatgttgg tatgctatcg ggtgatttaa tatttagaag 2940 tatatcttga tcctgagtgt gattcactta cgaatcagtt ctaacggttt ctataaaccg 3000 tagtcgtcgc tgcgacgccg atcgtcttac aagacgctcg agctgccttt gggttttact 3060 ccttgaaccc ttcggaagaa ttcttcggag ttcgtaccag tacttcacat agtgaagtga 3120 taagactggt gggcagtgcc tagtcgaaag actaggtgat ctctaaggag acca 3174 //