ID AF321298; SV 1; linear; genomic RNA; STD; VRL; 8289 BP. XX AC AF321298; XX DT 26-DEC-2000 (Rel. 66, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Walrus calicivirus non-structural polyprotein, capsid, and putative DE nucleic-acid binding protein genes, complete cds. XX KW . XX OS Walrus calicivirus OC Viruses; Riboviria; Caliciviridae; Vesivirus. XX RN [1] RP 1-8289 RX DOI; 10.1016/j.virusres.2004.01.033. RX PUBMED; 15084403. RA Ganova-Raeva L., Smith A.W., Fields H., Khudyakov Y.; RT "New Calicivirus isolated from walrus"; RL Virus Res. 102(2):207-213(2004). XX RN [2] RP 1-8289 RA Ganova-Raeva L.M., Khudyakov Y.E.; RT ; RL Submitted (14-NOV-2000) to the INSDC. RL Hepatitis Branch, CDC/NCID/DVRD, 1600 Clifton Rd, A-33, Atlanta, GA 30333, RL USA XX DR MD5; 25f8fb3a35a71d46746bb3f932e266d8. DR EuropePMC; PMC136553; 12239283. DR EuropePMC; PMC3519611; 23190937. DR EuropePMC; PMC5312078; 28196955. XX FH Key Location/Qualifiers FH FT source 1..8289 FT /organism="Walrus calicivirus" FT /host="walrus" FT /mol_type="genomic RNA" FT /db_xref="taxon:146073" FT CDS 4..5646 FT /codon_start=1 FT /product="non-structural polyprotein" FT /note="encodes helicase, protease and polymerase" FT /db_xref="GOA:Q9DKW2" FT /db_xref="InterPro:IPR000317" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9DKW2" FT /protein_id="AAG42491.1" FT /translation="MAQTLSKISNKENSSSGHWPKRFKPHQPIPTWMVRCGLLDYDSRR FT GREPVRASPQAKRVRTPTPYPRHLKPAASAVVRSGNNPPHLKPTSTDVVRSGPETPCCE FT VKDGGVVRSCKTCNLKPAHESKTVSFSLPQTDGPNGNEPEFIAEACPSCALYDTCPNCT FT SKVINDDGSTDGTVPSWDQIETTPAFLSLLSNTDEEMSADELTNLAAHLRKAFETGSHP FT ANVDYSKDQLQGLLEMAEAALPPARRQTLPFYQQRLEARRTWREKIFNMPLDEINKILT FT TSKDRFQRCAAWKVVLEKAVLAKEYGEEIYAYAQQALKNINSFDVNLVLKMGAATFIDH FT LRMMTVDNPDLVSYIPKLVVKLKPLTLKMIIDNHENTREGWLVTLTSLAELYGMVEVAI FT DLVPTVVGNLFDLLMKTTSKMYSMFKSLVLATFTSESLDFTNPFWYAIAAILCFLITGA FT IPHNGKMKVIKNILSNATGIVAGIKAIQSLAAMFSTWSNERLVNDLSSRTIAITELNNP FT TITADIDAVINLQRLAETLRDEVKSHTLNPLMQPYNPILRNLMSALDNVISCCTRRKAI FT ATKRTAPVAIILTGPPGCGKTTAAFALAKRLSQQKPSIISLDVDHHDTYTGNEVCIIAE FT FDSPDKVDYPNFVVNMVNTNPMVLNCDLIENKGKTFTSKYVIMTSNSETPVKPTSRRAG FT AFYRRVMIVDVTNNAVEKWKADHPGKAVPKWCFNKDFSHLTLSLRGTEAYCKEYVLDPS FT GRNHQSRKAPQPQQITLEQLAQKMVVQHTTNTSEFVTQAGDVPVFGFVCQNNEIDTVYN FT LLAAVKARYGANFNLYKGMARTAHENSGCGAHVHVVSREDNFRGKAFTVNRSKLESVPH FT LEGDSFRRSLGVVMSDKDVTTMFYYIKGKVINDQVNLTELPANQHVVTVHTVYDMAWAL FT RRHLKWTGQRQLIKAAFEIMCYPDTAACALRNWMDSTHFSEEHVVTQFISPGGTIILES FT CYGARMWATGQRLIRAGGLTEAGGPQGGVRFAGLGARNVPWSEILREFMTLISHIWSQI FT KGATVVLTALTFYLKRFRPRAEAKGKNKNKGPRKNTGVALTDDEYDEWRQYKAEKKLDL FT TVEDFLQLRHRAAMGADDTDAVKFQCWYSERQRNYHDLEDVTIIGRGGVKRELIRKGPL FT RPRGNDFYDEPDDWYSEGVIDGVTHKNAIVSVDDVDGMHKGYAVHIGHGVYISLKHVLT FT GNARILSEEPKSLTLNGELATFRLNNVLPTAVPVGTSKPIKDPWGNPVSTDWQFKNYNT FT TSGNIYGACGSSCSLTRQGDCGLPYVDDHGVVVGLHAGSGGDKCPSRKLIVPYVKVDMR FT IRDTCTKEFFKDNKPTISYKGLLAKETGEPRTIMKGTRLHVSPAHTDDYEECTHQPASL FT GAGDPRCPISLTGIMVNNLQPYTEAAPGPDTATLNRVTKMLTSHMEGYVPKSHKTEEDM FT VSAFYMLNHDTSCGPYIGGRKKDHVKDGVLDKNLLDLLSSKWNRAKLGLALPHEYAFGL FT KDELRPKDKVAAGKRRLIWGCDVGVSTVCAAAFKRVSESIMANHALGFIQVGINMDGPA FT VEDLFKRLDRPKHDRYCVDYSKWDSTQPPKVTSQSIDILRHFTDKSPIVDSACATLKSN FT PIGIFNGVAFKVAGGLPSGMPLTSIINSLNHCLMVGSAVVKALEDSGVQVTWNIFDSMD FT LFTYGDDGVYIVPPLISSVMPKVFANLKQFGLKPTRTDKTDAEITPIPKDEPVEFLKRT FT IVRTENGIRALLDRSSIIRQFYYIKAENTENWTEPPKKIDTSSRGQQLYNACLYASQHG FT EEFYTNKIVPLIERAIELEGLHIEVPEFHQAVAAYNGYFNGTEGQPSQIAFVSGGIGLS FT GEVFEN" FT CDS 5652..7778 FT /codon_start=1 FT /product="capsid" FT /db_xref="InterPro:IPR004005" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:Q9DKW1" FT /protein_id="AAG42492.1" FT /translation="MATTHTLLSFDDLEFLLHKKDLTDFYGERCGTLNLVINPYDLFLP FT DELDDDWCDDPFNCCFADVYASIGTEYSYIDPPDLIHDEHCATNGTWPDGTPCEPILPP FT FVIEGTHHYYATKPGEVVSGILAKLGSTWDPDLQSKVDTGANFVFRAESDGPSNPDVIT FT EEQGTVVQQQPAPAQSALTTLAAASTGKTVDCEWTTFFSYHTAVNWSTTEAQGKILFSQ FT ALSPELNPYLRHISSLYSTWSGGIDVRFTVSGSGVFGGKLAALVVPPGVEPVESPSMLQ FT YPHVLFDARQTEPVIFTIPDIRRTLYHTMDDTDTTRLVIMVYNELINPYEQTDIKSSCS FT ITVETRPSVDFTFSLLKPPGSLLKHGSMPSDLIPTSSRHWMGNRWWTTIDGFVVQPRVF FT QSNRHFDFDSTTTGWSTPYFIPIEVTVDASENKQYLRVIDAEKQLVPGIPDGWPDTTIP FT ERATMTNGKYSYTVQPGPEGKGHILKSNETHFKGFYIMGNLTTKTKTTDNGGNDAELQQ FT TSVTLFATNAKANKDSLDSNNKISSNSLFLYNADNRATMSKTKTAHSTMSQLGYVLVDD FT NPVGSESSKVVRIATLPEAFANGGNFPIFYRNKIQIGYFDRQHTDCWNSQILMTSQKLA FT ENHYSLPPDSFAVYRITDSSSDWFDLGIDRDGFSYVGVSTLPEFNFPITATFMGVQLAK FT VKLAFKVKNSKTKL" FT CDS 7775..8107 FT /codon_start=1 FT /product="putative nucleic-acid binding protein" FT /db_xref="InterPro:IPR007996" FT /db_xref="UniProtKB/TrEMBL:Q9DKW0" FT /protein_id="AAG42493.1" FT /translation="MNYANFGLDLFKSITDAAYEGKRIDLASKNLALKNRTLDTERDYN FT YARLAFEKQKFETNADLRVYGDLYRMQALRAAGYRINPYSNGNQIYADEAAAANLHSYY FT SFYKTD" XX SQ Sequence 8289 BP; 2343 A; 2159 C; 1840 G; 1947 T; 0 other; gctatggctc aaacgctctc aaaaatctct aacaaggaaa actcctcttc aggccattgg 60 cctaagaggt ttaaaccgca ccaacccatc ccaacgtgga tggtacggtg tgggcttctc 120 gactacgact cacgtcgtgg tcgggaacct gtccgtgctt cgccacaagc gaagcgcgtc 180 aggacaccta ccccctaccc tcgccatctc aaacctgcag catctgctgt agttaggagt 240 ggcaacaatc ctccccatct caaacccaca tcaacagatg tggttaggag tggacccgaa 300 accccctgct gtgaagttaa ggacggaggt gtagttagga gttgcaagac ctgcaatctc 360 aaacctgcac acgaatccaa gactgtcagc ttctcccttc cccaaacgga cggacccaac 420 ggcaacgaac ccgaattcat cgctgaagct tgccccagtt gcgcactgta cgacacatgt 480 ccgaactgca catctaaggt aatcaacgat gatggctcga ctgacggaac cgttccttct 540 tgggatcaaa ttgaaacgac cccggctttt ctgtctctgc tttccaacac cgacgaggaa 600 atgtcagcag atgagctcac caacctggcg gctcacttgc gaaaggcttt cgagactgga 660 tcacacccgg ctaatgttga ctactccaag gaccaactcc aaggcttgct cgaaatggct 720 gaggctgctc taccacctgc aagaaggcag accttgcctt tttaccaaca aagactggaa 780 gcccgcagaa cctggcgcga aaagattttc aacatgccat tggacgaaat caacaagatc 840 ctcacaactt caaaggaccg attccaacgc tgtgcagctt ggaaagttgt cctcgaaaag 900 gcggtactcg caaaggagta cggggaggaa atctacgctt acgcccaaca ggcactcaaa 960 aatatcaact catttgatgt gaatttggtt ttgaaaatgg gtgcggcaac attcatcgac 1020 cacctgagga tgatgactgt agacaacccc gatttggtat cctatatccc aaaactagtt 1080 gtcaaattga aacctctaac actcaaaatg ataattgata accatgagaa caccagggag 1140 ggctggcttg ttaccctcac aagtcttgca gaactctacg gaatggttga ggtcgcaatt 1200 gatctcgtcc caaccgtagt tggaaatctg ttcgacctac tcatgaagac aacatcaaaa 1260 atgtacagca tgttcaaatc actggtgctt gcaacattca cctcagaatc acttgatttc 1320 accaacccat tctggtacgc cattgctgcg atactctgct tcctgattac aggagcaata 1380 ccgcacaacg gcaaaatgaa agtgattaag aacatcctct caaacgcgac tggcattgtg 1440 gccggaatca aggccataca aagcctcgct gccatgttct caacatggtc gaacgagagg 1500 ttagtcaatg acttgtcatc aagaacaatt gcaatcactg agctgaacaa cccaacaatc 1560 acagctgaca ttgatgcagt catcaacctg cagagattgg cagaaaccct tcgggatgag 1620 gtgaaatctc acaccctcaa cccgcttatg caaccataca acccaatctt gagaaacttg 1680 atgtccgcac ttgacaatgt gatatcctgc tgcacacggc gcaaggccat cgccacgaag 1740 aggacagcac ccgtggcaat catcctaacc ggacccccag ggtgcggtaa gacaactgcc 1800 gccttcgccc ttgcaaaacg gttgtcacaa cagaaaccat caatcatatc ccttgatgtc 1860 gaccaccacg acacgtacac agggaatgaa gtgtgcatca tcgccgagtt tgactcgccc 1920 gacaaggttg attatccaaa ttttgtggtc aacatggtta acaccaaccc catggtccta 1980 aactgtgatc tgattgagaa caagggaaag acattcacct caaagtatgt catcatgaca 2040 tccaactctg aaacaccagt caaaccaact tccaggcgcg ccggtgcgtt ctaccgacgt 2100 gtcatgattg tggatgtcac caacaatgct gtggaaaagt ggaaggccga ccatcccgga 2160 aaagccgtcc caaaatggtg cttcaataag gacttctccc accttaccct ttctctcagg 2220 gggaccgaag cttactgcaa agagtatgtt ttggaccctt cggggaggaa tcaccagtcc 2280 agaaaagccc ctcagcccca acaaatcaca ctggaacaat tagcccaaaa gatggttgtt 2340 cagcacacaa ccaacaccag cgaattcgtc acacaagctg gtgatgtccc agtttttgga 2400 ttcgtttgcc aaaacaacga gattgacacg gtctacaacc tacttgcagc cgtcaaggct 2460 aggtatggtg caaatttcaa tctgtacaag ggcatggctc gaactgcaca cgagaacagt 2520 gggtgtgggg cccatgttca cgtggtctct agggaagata acttcagagg aaaggcattc 2580 acggtcaaca gatctaaact tgaatcagtt ccccatcttg agggagactc cttcaggaga 2640 tctctcggtg tcgttatgtc tgataaagac gtgacgacga tgttctacta catcaagggg 2700 aaagtgatca atgatcaggt gaacttgact gaactacccg ccaatcaaca cgtggtgacc 2760 gttcacaccg tgtacgatat ggcctgggct cttcggagac acctgaaatg gactggccag 2820 cggcaactca taaaagctgc ttttgaaatc atgtgttacc cagacacagc agcttgtgcg 2880 ctacggaatt ggatggattc aacacacttt tccgaagagc acgtggtaac ccagttcata 2940 tctcctggag gaaccatcat cctcgagtcc tgctatggcg cacgtatgtg ggccacaggc 3000 cagcgcctca tccgcgctgg tggactcact gaggctggtg ggcctcaagg aggagtcaga 3060 tttgccggcc ttggtgcccg gaatgtaccc tggagtgaaa ttctcagaga attcatgacc 3120 ctaatctcac acatctggtc acaaatcaaa ggtgcaactg tcgtcttgac agcattgaca 3180 ttctacctga aaagattcag accaagggct gaagctaagg gcaagaacaa aaacaaaggc 3240 ccacggaaga acactggagt tgctctgact gatgatgagt acgatgagtg gaggcagtac 3300 aaggctgaaa agaagctcga tcttacggtc gaggacttcc tccagctcag acaccgtgct 3360 gcgatgggtg ctgatgatac cgatgccgtc aaatttcagt gttggtactc tgaaagacaa 3420 cgaaattacc acgatttgga agatgtcacc ataattggcc gcggtggcgt gaaacgtgaa 3480 ctcatccgca agggaccctt gcgccctcgc ggaaatgact tctacgatga accagacgac 3540 tggtactctg aaggagtcat cgatggcgtc acccacaaaa acgccatcgt cagcgtggat 3600 gatgttgacg gtatgcacaa aggctatgcc gtccacattg gccacggagt ttacatttca 3660 ctgaaacatg ttttgactgg aaatgccaga atcctatcag aggaacccaa aagtctcaca 3720 ctcaatggtg aattggcaac attcagattg aacaacgtcc tgcccacagc agtcccagta 3780 ggaacatcca aacccatcaa ggatccctgg ggtaacccag tctccactga ttggcagttc 3840 aagaactaca acacgacctc tggaaacatt tatggagctt gcggctcgtc atgctcactg 3900 acgagacagg gagattgcgg tctcccctac gtcgatgatc atggcgtggt tgtcgggctt 3960 catgctggtt ctggtggtga caagtgccca tcgcgaaaac tcatcgtccc ctacgtcaag 4020 gtggacatga gaattcgcga cacgtgcacc aaggagttct tcaaagacaa caaaccaacc 4080 atctcctaca aaggactgct cgccaaggaa actggggagc caagaacaat catgaaaggc 4140 accaggctcc acgtgtcacc agcgcacact gatgactacg aggagtgcac acatcaacct 4200 gcttcactcg gcgcaggtga cccaaggtgc cccatatccc tcactgggat aatggtcaac 4260 aatctccaac cctacactga ggccgctcca ggacctgaca ctgcaacact caatcgggtt 4320 acaaagatgt taacatcaca tatggaagga tacgtcccaa agtcacacaa aactgaggaa 4380 gacatggtct ctgcattcta catgctcaac cacgacacct catgtggccc gtacatcggc 4440 ggccgcaaga aagatcacgt caaagatggt gtcttagaca agaaccttct tgatctcctt 4500 agttcaaagt ggaatcgtgc aaagctcggg cttgctcttc cacacgagta tgccttcggt 4560 ctcaaagatg aacttcgacc aaaagacaag gttgcagccg ggaagcgtag gctcatttgg 4620 ggatgcgacg ttggcgttag cacagtttgt gctgccgctt tcaaacgtgt ttccgaatca 4680 atcatggcaa accacgctct cggcttcatt caagttggca tcaacatgga tggacctgct 4740 gtcgaagacc tcttcaaaag acttgaccga ccaaagcacg atcgatattg tgttgactac 4800 tcaaaatggg actctaccca accaccaaaa gtaacatccc aatcaattga tattctcagg 4860 catttcactg acaaatctcc aattgttgat tcggcttgtg caacactaaa atcaaaccca 4920 attggcattt tcaacggtgt tgcattcaag gtggctggtg gtttaccatc aggcatgcca 4980 ctcacatcca tcatcaactc actgaatcat tgtctcatgg ttggctcggc tgttgtcaag 5040 gctctcgagg actctggcgt gcaagtgact tggaacatct tcgactcgat ggacctattc 5100 acttacggtg acgacggtgt ttacatcgtt ccaccactca tttcatccgt catgccaaaa 5160 gtcttcgcga acctgaaaca gtttggcctg aaaccgaccc ggaccgacaa aacggacgct 5220 gagataacgc caatccccaa agatgaacca gttgagtttc tcaagcggac gattgttcgc 5280 actgagaatg gcatacgtgc attgcttgac aggtcatcca ttattcggca attctactac 5340 atcaaagcag agaacactga aaattggaca gaaccaccca agaaaattga cacttcatca 5400 agaggtcaac aactctacaa tgcatgtcta tatgccagtc aacacggaga ggaattctac 5460 accaacaaga ttgtcccact cattgagcgg gcaattgaac ttgaaggtct acacattgag 5520 gtcccggaat tccatcaagc tgttgcagct tacaacgggt acttcaatgg tactgagggc 5580 caaccaagcc agatcgcttt cgtgagtggt ggaattgggc tcagtggtga ggtgtttgag 5640 aattagccac tatggctact actcatacgc ttctgtcgtt tgacgacctc gaatttctct 5700 tacacaaaaa ggacctaacc gatttctacg gagagaggtg cggtaccctc aatctggtca 5760 tcaatcctta tgatcttttt ctcccggatg aattagatga tgattggtgt gatgatcctt 5820 ttaattgttg ctttgctgat gtctatgctt ctattggaac tgagtacagt tacattgacc 5880 ctccagacct catccatgat gagcactgtg caacaaatgg aacctggcca gatggaactc 5940 cttgcgagcc catcttacct ccgttcgtca tcgaaggaac ccaccactac tacgccacaa 6000 aacccggtga agtggtgagc gggatcctcg caaaactcgg atctacttgg gatccagacc 6060 ttcagtccaa agtggacaca ggtgcaaact ttgtgttcag ggctgaatcg gatggtccca 6120 gtaaccccga tgtcatcacg gaggagcaag gtacagtagt gcaacaacaa cctgcaccag 6180 cacagtcagc tctgacaacc cttgcagcag cgtcaactgg taaaacagtt gattgtgagt 6240 ggacaacatt cttctcatac cacactgctg tgaactggtc aacaactgag gctcaaggga 6300 aaattctctt ctctcaagct cttagtcctg aactgaatcc ttatcttaga catatctctt 6360 ctctctactc cacctggtct ggcggaatag atgtcaggtt cactgtgtca ggatctgggg 6420 tgttcggtgg gaagctggct gcgttggtag tgccgcctgg ggttgaaccc gtggagtctc 6480 cctccatgct acaataccca cacgtgctat ttgatgctcg ccaaaccgaa cctgtgatct 6540 tcacaatccc agacataagg agaaccctct accacacaat ggatgatact gacacaacaa 6600 gacttgtcat catggtgtac aatgagctca taaatcctta tgagcaaact gacatcaaat 6660 caagctgctc aatcacagtt gaaaccagac cgtctgtgga cttcaccttc tctttactca 6720 aacctcctgg ttctctcttg aaacatggtt ccatgccatc tgacctgatc ccaaccagct 6780 caaggcattg gatgggaaat cgttggtgga caaccatcga cggttttgtc gtccaaccca 6840 gggtgttcca atccaacagg cactttgact tcgactcaac cacaactggc tggtcaaccc 6900 cttacttcat ccccattgag gtaacggttg atgcctctga gaataagcaa tacctccgtg 6960 tgattgacgc cgaaaaacaa ctggtgccgg ggataccaga tggatggccc gatacaacca 7020 tccctgaacg agcaaccatg accaatggca agtactcgta cacggttcaa ccaggacctg 7080 agggaaaagg gcacattctt aagtccaatg aaacccattt caaaggcttc tacataatgg 7140 gcaatctcac aacaaaaacc aaaacaacag ataatggagg aaatgatgct gaactgcagc 7200 aaacttcggt aacgttgttt gcaacaaatg caaaggctaa caaagatagt cttgattcaa 7260 ataacaagat tagttccaac tcacttttcc tctacaatgc tgataatcgg gcaacaatgt 7320 ccaaaaccaa aactgcccat tcaaccatgt ctcagcttgg ctacgtgctt gtcgatgata 7380 acccagttgg gagtgagtcc tcaaaggttg tgaggattgc aacactgcca gaagcgttcg 7440 ctaatggcgg caattttcca atcttctaca ggaacaaaat tcaaattggg tacttcgacc 7500 ggcagcacac agactgctgg aacagccaga ttctgatgac atcacagaaa ctggcggaga 7560 accactattc tcttcctcct gattcatttg ctgtctacag gatcaccgac tctagctctg 7620 attggttcga tctcggtatc gaccgcgacg ggttcagtta tgtcggcgtt tccactcttc 7680 ctgaattcaa ctttcctatc actgcaacct tcatgggagt gcagctagct aaggtcaagc 7740 tggcgttcaa ggttaagaac agtaagacaa aattatgaat tatgcaaatt ttggattgga 7800 tttattcaaa tcaatcacag atgctgccta tgaaggcaag aggattgatt tagctagcaa 7860 gaatctggct ctcaagaatc gcactctcga cacagagagg gattacaatt atgccaggct 7920 agcatttgaa aagcaaaaat tcgaaaccaa tgccgatttg cgagtgtatg gtgacctcta 7980 tcgcatgcag gccttgcgcg ctgctgggta caggatcaac ccttactcca atggcaacca 8040 aatttacgcg gacgaagctg ccgctgcaaa tctgcactct tactatagct tctacaaaac 8100 ggactagttc caatctgctt aacaatttct ctatccttta gtaaatgatt tacttccttc 8160 tatcagttaa tagttaatta atacaagtgt ttttatgttt tcacctcttt attaatcagc 8220 taattaatgg gatatttgtt cttagtattt tagactgtag ggtagtttaa ttggtaggtt 8280 gcataaggg 8289 //