ID AF321057; SV 1; linear; genomic RNA; STD; VRL; 6562 BP. XX AC AF321057; XX DT 31-DEC-2000 (Rel. 66, Created) DT 04-APR-2012 (Rel. 112, Last updated, Version 3) XX DE Cucumber fruit mottle mosaic virus, complete genome. XX KW . XX OS Cucumber fruit mottle mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6562 RA Wang Y., Antignus Y., Lavi N., Pearlsman M., Lachman O., Gal-On A.; RT "Biological and Molecular Characterization of a New Cucurbit-Infecting RT Tobamovirus"; RL Unpublished. XX RN [2] RP 1-6562 RA Wang Y., Antignus Y., Lavi N., Pearlsman M., Lachman O., Gal-On A.; RT ; RL Submitted (12-NOV-2000) to the INSDC. RL Plant Virology, The Volcani Center, Bet Dagan 50-250, Israel XX DR MD5; 310bfd02f21f942f52a74e55a45c3e30. DR EuropePMC; PMC5282660; 28137291. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6562 FT /organism="Cucumber fruit mottle mosaic virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:146499" FT CDS 63..5063 FT /codon_start=1 FT /transl_except=(pos:3561..3563,aa:OTHER) FT /product="replicase large component" FT /note="contains readthrough stop codon" FT /db_xref="GOA:Q9DKW5" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9DKW5" FT /protein_id="AAG42815.1" FT /translation="MANITQHINDTREAAAAGRNPLVAQLASKRVYDEAVKSLDSQDKR FT PKVNFARVLTTEQTRKVTESYPEFSISYTASALSVHSLAGGLRYLEGEYLMMQVPYGSP FT VYDIGGNYSQHMLKGRAYVHCCNPCLDLKDIARNEMYKDAIDRYVHKKREAPRSNAWRA FT RAESVQEIKDGRLPSWQIDAFQRYKDCPRAVTCNDVFQECQYEHTRRGDRYAVALHSIY FT DIPFEQIGPALLRKNIKVLFAAFHFSEELLLGQSFGALPNIGAFFTVNGDSVEFQFEEE FT STLHYSHSFQNIRKIVTRTYFPASDRVVYVKEFMVKRVDTFFFRMVRVDTHMLHKSVGT FT YPVCATNYFSLKSSPIFQDKATFSVWFPKAKSKVVIPIFKMQGFFTGSIVAEKMMIDAS FT FIHTVINHICTYDNKALTWRNVQSFVESIRSRVVVNGVSVRSEWDVPVELLTDISFTVF FT LLVKVKKTQIEIMSDKIVTQPQGLIERIVQRVSEAFEGCTEAVQKALLTSGWFRTPADD FT LVLDIPELFMDFHDYLSGVFESRMLVLRRRTVEKCFKRFPTSFIRLYRKLCERYSGIEF FT DLEQVSDFCHHHDVNPALVGPVIEAIFSQTAGITVTGLSTKSVEWAAAEALAPTSVDMD FT CDSDDEELEQKFPNLSNEELRYLHEVRSKEAAFLELQDTFKTKKVTELVSVGVGALPTL FT PRQWIATGKVHLPQVGLSVGKNKHSVEICDEDGVSVKNLHLTETCNLRLKKTITPVIYT FT GPIRVRQMANYLDYLSANLAATIGILERIVRSNWSGNEVVQTYGLFDCQANKWILLPSE FT KTHSWGVCLTMDDKLRVVLLQYDSAGWPIVDKSFWKAFCVCADTKVFSVIRSLEVLSAL FT PLVEPDAKYVLIDGVPGCGKTQEIISSADFKTDLILTPGKEAAAMIRRRANMKYRSPVA FT TNDNVRTFDSFVMNKKPFTFKTLWVDEGLMVHTGLLNFCVNIAKVKEVRIFGDTKQIPF FT INRVMNFDYPLELRKIIVDTVEKRYTSKRCPRDVTHYLNEVYSSPVCTTSPVVHSVTTK FT KIAGVGLLRPELTALPGKIITFTQNDKQTLLKAGYADVNTVHEVQGETYEETSVVRATA FT TPIGLISRKSPHVLVALSRHTKAMTYYTVTVDPVSCIIADLEKVDQSILSMYASVAGTK FT XQLQQLSVYVHLPVSKAGFWTDMQNFYDACLPGNSFVLNDYDSVTMRLVDNEINLQPCR FT LTLSKADPVTESLKMEKKEFLIPLGKTATERPRIPGLLENLIAIVKRNFNTPDLAGSLD FT ISSISKGVVDNFFSTFLRDEQLADHLCKVRSLSLESFSAWFDNQSTCALGQLSNFDFVD FT LPPVDVYNHMIKRQPKSKLDTSIQSEYPALQTIVYHSKLVNAVFGPVFRYLTSEFLSMV FT DNSKFFFYTRKLRMICKFLFPHFPNKQEYEILELDVSKYDKSQNDFHQAVEMLIWERLG FT LDDILARIWEMGHKKTHISDFQAGIKTLIYYQRKSGDVTTFIGNTFIIAACVASMVPLS FT RSFKAAFCGDDSLIYMPPNLEYNDIQSTANLVWNFEAKLYKKKYGYFCGKYVIHHANGC FT IVYPDPLKLISKLGNKSLESYDHLEEFRISLMDVAKPLFNAAYFHLLDDAIHEYFPSVG FT GSTFAISSLCKYLSNKQLFGSLFIKPSV" FT CDS 5064..5840 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:Q9DKW4" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q9DKW4" FT /protein_id="AAG42816.1" FT /translation="MSISKVGVRNALKPEEFVKITWVDKLLPDAFTILKYLSITDYSVV FT QSKDYEHLIPVDLLRGVDFSKSKYVTLVGVVISGVWTIPENCAGGATVALVDTRMSLVS FT EGTICKFSVSAASRDFTVKLIPNYYVTAADASSKPWSLFVRISGVRIKDGFSPLTLEIA FT SLVATTNSILKKGLRVSVIESVVGSDASVSLDTLSEKVQPFFDSVPITASVVSRDRSYV FT SKGRPPSRSGPVSRKSKSKSEAESFSDSGASEPLSS" FT CDS 5846..6334 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q9DKW3" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q9DKW3" FT /protein_id="AAG42817.1" FT /translation="MSYSTSGLRSLPAYTKSFCPYYALYDLLVSAQGGALQTQNGKDIL FT RDSINGLLTTVASPRSRFPAEGFFVWSRESRIAAILDSLLSALDSRNRAIEVENPSNPS FT TSEALNATKRNDDASTAAHNDIPQLISALNDGAGVFDRASFESQFGLVWTAASSSTSK" XX SQ Sequence 6562 BP; 1619 A; 1202 C; 1660 G; 2081 T; 0 other; gataaaagtt ttttacattg aacaaaaaca atatacatta cttttataac aatacacaat 60 acatggcaaa cattacacaa catatcaatg ataccaggga ggctgcggcc gccgggcgta 120 atccgctcgt ggcgcagctg gcttcgaaga gggtttatga tgaggctgtc aagtctcttg 180 attctcaaga taaacgccct aaggtgaatt ttgctcgggt attgaccaca gagcagacga 240 ggaaggtcac ggagtcgtat ccggagtttt cgatcagtta tactgcatcg gccttatctg 300 tgcatagttt ggcgggggga ctgcgatatt tagaaggtga gtacctgatg atgcaggttc 360 cctatgggtc gcccgtgtat gatatcggag ggaattactc gcaacatatg ctgaagggga 420 gagcatacgt acattgttgc aatccgtgcc tggacctgaa ggacattgca cgcaatgaga 480 tgtacaagga tgccattgac cgttatgtgc ataagaaacg cgaagcgcca cgttctaatg 540 cttggagggc tagggcagag tccgtccaag aaattaaaga cggccgtcta ccttcatggc 600 agatcgatgc gtttcagcga tataaggatt gtccaagagc ggtcacctgt aatgatgtgt 660 tccaagagtg tcagtatgaa catacgagga gaggggatcg ttatgcagtt gctctgcatt 720 cgatttatga tattcctttc gaacagatag gacctgcgct cttgcggaag aatattaagg 780 ttctcttcgc cgcattccat ttctcagagg agttgctgtt ggggcaaagt tttggtgcct 840 tgcctaatat aggtgcgttc tttaccgtca atggtgattc cgtcgagttt cagttcgaag 900 aagaatctac tttgcattat tcacatagtt tccagaatat taggaagata gtaactagga 960 cgtattttcc tgcttcagat agggtagttt atgtaaagga gtttatggtt aagcgtgtag 1020 atactttctt tttccgtatg gttagggttg atacccatat gttacataag tcagtaggta 1080 cgtatcctgt ttgtgcgact aactatttct ctctcaagtc atcaccaata ttccaggata 1140 aagccacgtt ctctgtgtgg tttcccaaag ctaaatctaa ggtggtgata cctatcttta 1200 agatgcaagg gtttttcact gggtctattg tggcagagaa gatgatgatc gatgctagct 1260 ttattcatac tgttatcaat catatctgta cttatgataa taaggcgtta acgtggagga 1320 atgttcagtc cttcgtcgag tcaattcggt cccgggttgt cgtgaatggg gtttcggtgc 1380 ggagtgaatg ggatgtgccg gtagagcttt taactgatat ttcgttcacc gtttttttac 1440 tagtcaaagt caagaagacg cagatcgaga ttatgagtga taaaattgtg acacaacctc 1500 aggggttgat tgagcggatt gtacagagag tctctgaagc tttcgaagga tgtacagaag 1560 cggtgcaaaa ggcccttctt acttccgggt ggttcagaac tccagcggat gatctcgttc 1620 ttgatattcc tgagttgttc atggattttc atgattatct cagcggtgtc ttcgaaagcc 1680 ggatgctcgt attgaggcga cggaccgtcg aaaaatgttt taagcgcttt ccgacaagct 1740 ttattcgact gtatcggaag ctttgtgagc gatattctgg gattgaattt gacttggagc 1800 aagtttctga tttttgccac caccatgacg tgaatcctgc tttggtggga cccgtgatag 1860 aggcgatttt ttcgcagact gccgggatta cagtcactgg gctgtctaca aaatctgttg 1920 agtgggcagc cgcagaggct ttagcaccga cgtctgttga tatggattgt gacagtgatg 1980 atgaggagct ggagcagaaa ttcccaaatc tgtccaatga ggagttgaga tatttgcatg 2040 aggtgagatc gaaggaagcc gctttcttgg agctacaaga tacatttaaa accaagaagg 2100 tgactgagtt agtgtctgtg ggagtaggag ctttgccaac gctaccgcgt cagtggatag 2160 cgacagggaa ggttcatctt cctcaggttg gtctgtcggt tgggaagaat aaacattcgg 2220 tcgagatatg tgacgaagat ggggtcagtg tgaagaatct gcatctgacg gagacgtgta 2280 atctaagatt gaagaagact atcactccgg tgatctatac tgggcccata agagtgcgtc 2340 agatggctaa ttatctcgat tatctttctg ctaatctggc cgctacgata ggaattctcg 2400 aaagaattgt tcgatcgaat tggtctggga atgaggttgt gcaaacttat ggtctttttg 2460 attgtcaggc taataagtgg atcttactgc cctctgagaa aacacatagt tggggtgtct 2520 gtctgactat ggatgataag cttcgtgttg tcctgctgca gtatgattcc gccggttggc 2580 cgattgtaga taagtctttt tggaaagctt tttgtgtgtg tgcggatact aaagtttttt 2640 ctgttattag gagtcttgag gttttgtctg ctttaccttt agttgaaccg gatgctaagt 2700 atgtgctgat tgatggtgtg cctggttgtg ggaagacgca agagattata tcgagtgcgg 2760 acttcaaaac ggatctaatc cttacacctg gtaaggaagc cgcggccatg atcaggcgta 2820 gagccaacat gaaatatagg agtcccgtcg ccacaaatga taatgtgagg acttttgatt 2880 catttgtaat gaataaaaag ccctttacct ttaagacact atgggtggat gagggtctca 2940 tggtgcatac cggtctgtta aatttctgtg tgaatattgc taaggtaaag gaagttcgta 3000 ttttcggtga tactaagcaa atccccttca ttaatagagt gatgaatttc gattacccac 3060 tagagctgag gaaaattatt gttgatacgg tggaaaagcg gtacacgagt aaacggtgtc 3120 caagggatgt gactcattat ttgaatgagg tatattccag tcccgtgtgt actactagtc 3180 ctgtcgtaca ttcagttact acaaaaaaga ttgctggagt gggtcttttg cgaccggaat 3240 tgacggcatt gcctggtaag attataactt tcactcagaa tgacaagcaa acgcttttaa 3300 aagcgggtta tgctgatgtg aatactgtgc atgaggtgca gggggagaca tatgaggaaa 3360 cttccgtggt gagggctact gctacaccaa ttggtttgat ttcgcgtaag tctccgcatg 3420 tgcttgttgc tctgtcgagg cataccaagg cgatgacgta ttatactgtg actgtggatc 3480 ccgtgagctg tataattgct gatttggaga aggtcgatca aagtattctg tctatgtatg 3540 cctctgtggc ggggaccaaa tagcaattac agcaactatc cgtctatgtg catttgcccg 3600 tgtcgaaggc gggtttttgg acggatatgc aaaattttta tgacgcttgt ctgcccggga 3660 atagttttgt gttgaatgat tacgattctg tgactatgcg gctggttgat aatgagatta 3720 atctgcaacc ttgtaggtta actctatcta aagccgatcc cgttacagag tctctgaaga 3780 tggagaaaaa ggagtttttg atcccgcttg gtaaaactgc tacggagcgt ccgcggatcc 3840 ctgggctttt agaaaatttg atagctatag ttaagaggaa ttttaataca ccggatttag 3900 ccgggagttt agatatttct agtattagta agggtgtagt agataacttc ttttccactt 3960 ttttgcgtga cgagcaattg gcggatcacc tttgtaaagt taggtctctt agtctagagt 4020 ctttttccgc atggtttgat aatcaatcaa cttgtgctct gggtcagttg tctaatttcg 4080 attttgtgga tctgcctccc gttgatgttt ataatcatat gattaagagg caacccaaat 4140 cgaagttaga cacctcgatt cagtctgagt atcccgcgtt gcaaacgatt gtttatcata 4200 gtaaattagt gaatgcggtt tttggtcccg ttttccgtta tcttacttcc gagtttttat 4260 ctatggtaga taatagtaaa tttttctttt atactagaaa actccggatg atttgcaagt 4320 ttcttttccc acactttccc aataagcagg agtatgagat tctagagcta gatgtttcca 4380 aatatgataa atcacagaat gattttcatc aggctgtgga gatgcttatt tgggaacgtt 4440 taggtctaga tgatattctt gctaggattt gggaaatggg gcataagaag acgcatatca 4500 gtgatttcca agctgggatt aaaactctta tttattatca gcggaaatct ggagatgtta 4560 ctacttttat aggtaatact tttattatag ctgcttgtgt cgcttctatg gttccgctga 4620 gtcggagttt caaagctgcc ttttgtggtg atgattcact gatctatatg ccaccgaatc 4680 tggaatataa tgacatacag tcgaccgcga atctcgtgtg gaatttcgag gctaaactgt 4740 ataagaagaa atatggttat ttctgtggca aatatgtgat ccatcatgcg aatgggtgta 4800 ttgtttatcc ggatccgttg aagctaattt ctaaattagg caataagagt ctggaaagtt 4860 acgatcattt ggaggaattt aggatttctc tgatggacgt agctaaacct ttgttcaatg 4920 ctgcttattt tcatctttta gatgatgcta tccacgagta ttttcctagt gttgggggta 4980 gcacgtttgc tattagttct ttgtgcaagt atcttagtaa taagcagttg tttgggtctc 5040 tattcattaa gcctagtgtc tagatgtcca tcagtaaggt cggtgtcagg aacgctttaa 5100 agccagagga atttgttaag attacttggg ttgataagct acttcctgat gcttttacta 5160 ttcttaagta tttatctatt acagattata gtgttgtaca gtctaaagac tatgaacatc 5220 tcatacctgt ggatctacta cgtggcgtgg atttttcaaa gtctaaatat gttactttgg 5280 ttggtgttgt gatctccggg gtctggacaa ttcctgagaa ttgtgccggt ggtgctaccg 5340 tggcgctggt cgatactcgg atgtccttag tgtcggaggg tactatttgt aagttttctg 5400 tatctgcagc cagtcgggat tttacggtaa aattgattcc gaattattat gtgactgctg 5460 ctgatgcctc ctccaaaccc tggtctttgt ttgttaggat ttctggtgtt aggatcaaag 5520 atggtttttc tccgttaact ctggagattg cctctttggt ggctaccacc aattctattt 5580 taaagaaggg tctaagagtt agtgtgatcg agtccgtggt agggtctgat gcctccgtgt 5640 cgttggatac cttgtctgaa aaggttcaac ccttttttga ttcggttccg attacggctt 5700 cagtggtatc tcgtgatagg tcttatgtgt ctaaaggtcg ccctccttct cggagtggac 5760 ctgtgtcgcg taaatctaaa agtaagagtg aggcagaatc tttttcggat agcggcgctt 5820 ctgagccact aagttcataa tcaagatgtc ttactctact tctggtttgc gttctttgcc 5880 tgcatatact aagtcttttt gtccttatta tgctttgtat gatctgttgg tgtcagccca 5940 aggtggagcc ctgcaaacgc aaaatggtaa agacattttg cgtgactcca taaatgggtt 6000 gttaacgaca gttgcgtctc ctaggagtcg gttccctgcg gaagggttct ttgtctggtc 6060 ccgtgagtcg cgcattgctg ctatattaga ttctctgctt tcggcgttgg attcaagaaa 6120 tagggctatt gaagttgaaa acccttctaa tccttcgacc agtgaagctt tgaatgctac 6180 taagcgcaat gacgacgcgt ctactgctgc gcacaacgac attcctcagc tgatttcagc 6240 tttgaatgac ggtgccggtg tgtttgatag agcgtctttt gagagtcagt tcggtctagt 6300 atggaccgct gcgtcgtcgt ctacctcgaa gtgaggcgtg gtcgctgcgt taagcgatag 6360 agtttttccc tcctctttaa tcgaagggtt tcccgttatg ggcgtggtca tcacgaaaga 6420 tgatagagtt tttccctcct cttaaatcga agggattgtt tgcgcggttt ctaccgagcc 6480 tctgctgtgt gacagtaagc tggcgtaagc aattatgggt agaggtgttc gaatcacccc 6540 ctttgccccg ggtaggggcc ca 6562 //